Last updated on 2025-11-08 07:50:58 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [86s/139s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.614, system: 0.053, elapsed: 2.562 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.378, system: 0.111, elapsed: 12.918 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.195, system: 0.014, elapsed: 0.274 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.928, system: 0.212, elapsed: 5.011 seconds]
Computing values for grid cells...
... done. [user: 0.177, system: 0.006, elapsed: 0.211 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.839, system: 0.418, elapsed: 21.740 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.612, system: 0.053, elapsed: 1.926 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.721, system: 0.295, elapsed: 13.485 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.196, system: 0.019, elapsed: 0.337 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.071, system: 0.263, elapsed: 6.726 seconds]
Computing values for grid cells...
... done. [user: 0.180, system: 0.009, elapsed: 0.316 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.328, system: 0.667, elapsed: 23.533 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.874, system: 0.090, elapsed: 2.734 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.708, system: 0.317, elapsed: 14.257 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.192, system: 0.016, elapsed: 0.272 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.149, system: 0.285, elapsed: 8.209 seconds]
Computing values for grid cells...
... done. [user: 0.169, system: 0.005, elapsed: 0.421 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.222, system: 0.231, elapsed: 1.952 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.929, system: 0.973, elapsed: 28.872 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.834, system: 0.099, elapsed: 5.027 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.719, system: 0.311, elapsed: 23.133 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.199, system: 0.013, elapsed: 0.472 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.970, system: 0.192, elapsed: 8.180 seconds]
Computing values for grid cells...
... done. [user: 0.173, system: 0.004, elapsed: 0.294 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.856, system: 0.550, elapsed: 18.700 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 27.416, system: 1.203, elapsed: 57.423 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [85s/142s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.768, system: 0.074, elapsed: 2.505 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.680, system: 0.220, elapsed: 16.673 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.191, system: 0.014, elapsed: 0.386 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.777, system: 0.190, elapsed: 6.786 seconds]
Computing values for grid cells...
... done. [user: 0.188, system: 0.010, elapsed: 0.326 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.161, system: 0.540, elapsed: 27.661 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.725, system: 0.044, elapsed: 2.500 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.780, system: 0.232, elapsed: 14.754 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.196, system: 0.019, elapsed: 0.370 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.025, system: 0.303, elapsed: 6.886 seconds]
Computing values for grid cells...
... done. [user: 0.182, system: 0.010, elapsed: 0.299 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.481, system: 0.652, elapsed: 25.730 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.904, system: 0.097, elapsed: 3.370 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.580, system: 0.099, elapsed: 18.267 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.198, system: 0.012, elapsed: 0.417 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.846, system: 0.182, elapsed: 7.639 seconds]
Computing values for grid cells...
... done. [user: 0.194, system: 0.019, elapsed: 0.353 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.141, system: 0.265, elapsed: 1.335 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.518, system: 0.713, elapsed: 32.809 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.510, system: 0.027, elapsed: 2.414 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.565, system: 0.077, elapsed: 16.652 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.197, system: 0.013, elapsed: 0.380 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.755, system: 0.174, elapsed: 7.451 seconds]
Computing values for grid cells...
... done. [user: 0.190, system: 0.005, elapsed: 0.420 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.676, system: 0.486, elapsed: 18.487 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 26.560, system: 0.813, elapsed: 47.068 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64