Last updated on 2025-12-27 07:50:32 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [94s/203s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.868, system: 0.117, elapsed: 3.024 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.267, system: 0.435, elapsed: 17.995 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.223, system: 0.030, elapsed: 0.412 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.858, system: 0.688, elapsed: 8.471 seconds]
Computing values for grid cells...
... done. [user: 0.193, system: 0.018, elapsed: 0.413 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.006, system: 1.331, elapsed: 31.357 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.762, system: 0.093, elapsed: 3.235 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.535, system: 0.278, elapsed: 14.589 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.211, system: 0.025, elapsed: 0.299 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.457, system: 0.527, elapsed: 6.501 seconds]
Computing values for grid cells...
... done. [user: 0.182, system: 0.012, elapsed: 0.234 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.698, system: 0.975, elapsed: 25.718 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.752, system: 0.088, elapsed: 3.505 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.095, system: 0.361, elapsed: 35.864 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.208, system: 0.023, elapsed: 0.668 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.914, system: 0.651, elapsed: 18.535 seconds]
Computing values for grid cells...
... done. [user: 0.187, system: 0.010, elapsed: 0.469 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.372, system: 0.328, elapsed: 3.033 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.251, system: 1.614, elapsed: 64.776 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.567, system: 0.050, elapsed: 2.010 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.239, system: 0.191, elapsed: 11.262 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.206, system: 0.025, elapsed: 0.297 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.795, system: 0.675, elapsed: 7.881 seconds]
Computing values for grid cells...
... done. [user: 0.181, system: 0.010, elapsed: 0.207 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 11.578, system: 1.044, elapsed: 41.684 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 28.237, system: 2.027, elapsed: 64.440 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [99s/440s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.917, system: 0.122, elapsed: 16.295 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.298, system: 0.392, elapsed: 47.991 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.221, system: 0.032, elapsed: 0.851 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.781, system: 0.790, elapsed: 19.337 seconds]
Computing values for grid cells...
... done. [user: 0.195, system: 0.010, elapsed: 1.043 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.163, system: 1.877, elapsed: 90.450 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.822, system: 0.093, elapsed: 8.709 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.247, system: 0.368, elapsed: 46.775 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.227, system: 0.041, elapsed: 1.205 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.858, system: 0.874, elapsed: 28.230 seconds]
Computing values for grid cells...
... done. [user: 0.183, system: 0.010, elapsed: 1.068 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.079, system: 1.847, elapsed: 91.094 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.773, system: 0.093, elapsed: 9.161 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.302, system: 0.397, elapsed: 59.577 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.231, system: 0.043, elapsed: 1.316 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.918, system: 0.815, elapsed: 25.613 seconds]
Computing values for grid cells...
... done. [user: 0.189, system: 0.013, elapsed: 0.549 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.287, system: 0.378, elapsed: 2.980 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.537, system: 2.214, elapsed: 104.437 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.653, system: 0.050, elapsed: 5.244 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.095, system: 0.293, elapsed: 52.791 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.218, system: 0.037, elapsed: 1.617 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.706, system: 0.671, elapsed: 25.498 seconds]
Computing values for grid cells...
... done. [user: 0.177, system: 0.009, elapsed: 0.582 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 11.364, system: 0.742, elapsed: 43.108 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 29.017, system: 2.194, elapsed: 134.180 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64