Last updated on 2026-03-30 08:52:50 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.4 | 15.30 | 271.50 | 286.80 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.4 | 11.94 | 314.95 | 326.89 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.4 | 22.00 | 303.98 | 325.98 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.1.4 | 31.00 | 347.80 | 378.80 | OK | |
| r-devel-macos-arm64 | 1.1.4 | 4.00 | 46.00 | 50.00 | OK | |
| r-devel-windows-x86_64 | 1.1.4 | 23.00 | 194.00 | 217.00 | OK | |
| r-patched-linux-x86_64 | 1.1.4 | 12.13 | 329.92 | 342.05 | OK | |
| r-release-linux-x86_64 | 1.1.4 | 14.16 | 346.01 | 360.17 | OK | |
| r-release-macos-arm64 | 1.1.4 | OK | ||||
| r-release-macos-x86_64 | 1.1.4 | 12.00 | 360.00 | 372.00 | ERROR | |
| r-release-windows-x86_64 | 1.1.4 | 21.00 | 195.00 | 216.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.4 | OK | ||||
| r-oldrel-macos-x86_64 | 1.1.4 | 10.00 | 385.00 | 395.00 | ERROR | |
| r-oldrel-windows-x86_64 | 1.1.4 | 24.00 | 243.00 | 267.00 | OK |
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [100s/320s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.601, system: 0.047, elapsed: 2.452 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.566, system: 0.098, elapsed: 12.731 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.226, system: 0.018, elapsed: 0.775 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.024, system: 0.767, elapsed: 60.956 seconds]
Computing values for grid cells...
... done. [user: 0.171, system: 0.003, elapsed: 0.209 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.162, system: 0.956, elapsed: 77.910 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.540, system: 0.030, elapsed: 2.074 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.608, system: 0.081, elapsed: 13.541 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.213, system: 0.015, elapsed: 0.749 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.982, system: 0.782, elapsed: 87.683 seconds]
Computing values for grid cells...
... done. [user: 0.186, system: 0.003, elapsed: 0.184 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.096, system: 0.937, elapsed: 105.039 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.538, system: 0.031, elapsed: 1.928 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.680, system: 0.060, elapsed: 13.705 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.219, system: 0.015, elapsed: 0.882 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.587, system: 0.713, elapsed: 60.403 seconds]
Computing values for grid cells...
... done. [user: 0.171, system: 0.003, elapsed: 0.175 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.280, system: 0.237, elapsed: 1.056 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.150, system: 1.104, elapsed: 79.050 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.539, system: 0.030, elapsed: 2.247 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.594, system: 0.097, elapsed: 12.862 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.222, system: 0.016, elapsed: 0.375 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.888, system: 0.711, elapsed: 18.319 seconds]
Computing values for grid cells...
... done. [user: 0.179, system: 0.005, elapsed: 0.195 seconds]
Starting 50 permutations...
... serially ...
|
| | 0%
|
|== | 2%
|
|=== | 4%
|
|===== | 6%
|
|====== | 8%
|
|======== | 10%
|
|========== | 12%
|
|=========== | 14%
|
|============= | 16%
|
|============== | 18%
|
|================ | 20%
|
|================== | 22%
|
|=================== | 24%
|
|===================== | 26%
|
|====================== | 28%
|
|======================== | 30%
|
|========================== | 32%
|
|=========================== | 34%
|
|============================= | 36%
|
|============================== | 38%
|
|================================ | 40%
|
|================================== | 42%
|
|=================================== | 44%
|
|===================================== | 46%
|
|====================================== | 48%
|
|======================================== | 50%
|
|========================================== | 52%
|
|=========================================== | 54%
|
|============================================= | 56%
|
|============================================== | 58%
|
|================================================ | 60%
|
|================================================== | 62%
|
|=================================================== | 64%
|
|===================================================== | 66%
|
|====================================================== | 68%
|
|======================================================== | 70%
|
|========================================================== | 72%
|
|=========================================================== | 74%
|
|============================================================= | 76%
|
|============================================================== | 78%
|
|================================================================ | 80%
|
|================================================================== | 82%
|
|=================================================================== | 84%
|
|===================================================================== | 86%
|
|====================================================================== | 88%
|
|======================================================================== | 90%
|
|========================================================================== | 92%
|
|=========================================================================== | 94%
|
|============================================================================= | 96%
|
|============================================================================== | 98%
|
|================================================================================| 100%
... computing probabilities from permuted values ...
... done. [user: 12.158, system: 0.729, elapsed: 15.604 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 31.261, system: 1.615, elapsed: 50.520 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [102s/335s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.607, system: 0.047, elapsed: 2.074 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.591, system: 0.112, elapsed: 12.756 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.213, system: 0.018, elapsed: 0.470 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.745, system: 0.844, elapsed: 7.233 seconds]
Computing values for grid cells...
... done. [user: 0.167, system: 0.004, elapsed: 0.178 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.897, system: 1.052, elapsed: 23.461 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.580, system: 0.038, elapsed: 2.010 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.604, system: 0.060, elapsed: 13.461 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.213, system: 0.016, elapsed: 0.875 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.744, system: 0.854, elapsed: 128.603 seconds]
Computing values for grid cells...
... done. [user: 0.166, system: 0.003, elapsed: 0.249 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.877, system: 0.991, elapsed: 145.901 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.585, system: 0.031, elapsed: 2.677 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.587, system: 0.057, elapsed: 14.532 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.214, system: 0.017, elapsed: 1.008 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.618, system: 0.765, elapsed: 89.052 seconds]
Computing values for grid cells...
... done. [user: 0.171, system: 0.004, elapsed: 0.219 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.238, system: 0.286, elapsed: 1.265 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.081, system: 1.192, elapsed: 109.814 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.571, system: 0.034, elapsed: 2.500 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.504, system: 0.093, elapsed: 12.758 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.362, system: 0.032, elapsed: 0.215 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.660, system: 0.825, elapsed: 16.076 seconds]
Computing values for grid cells...
... done. [user: 0.174, system: 0.004, elapsed: 0.180 seconds]
Starting 50 permutations...
... serially ...
|
| | 0%
|
|== | 2%
|
|=== | 4%
|
|===== | 6%
|
|====== | 8%
|
|======== | 10%
|
|========== | 12%
|
|=========== | 14%
|
|============= | 16%
|
|============== | 18%
|
|================ | 20%
|
|================== | 22%
|
|=================== | 24%
|
|===================== | 26%
|
|====================== | 28%
|
|======================== | 30%
|
|========================== | 32%
|
|=========================== | 34%
|
|============================= | 36%
|
|============================== | 38%
|
|================================ | 40%
|
|================================== | 42%
|
|=================================== | 44%
|
|===================================== | 46%
|
|====================================== | 48%
|
|======================================== | 50%
|
|========================================== | 52%
|
|=========================================== | 54%
|
|============================================= | 56%
|
|============================================== | 58%
|
|================================================ | 60%
|
|================================================== | 62%
|
|=================================================== | 64%
|
|===================================================== | 66%
|
|====================================================== | 68%
|
|======================================================== | 70%
|
|========================================================== | 72%
|
|=========================================================== | 74%
|
|============================================================= | 76%
|
|============================================================== | 78%
|
|================================================================ | 80%
|
|================================================================== | 82%
|
|=================================================================== | 84%
|
|===================================================================== | 86%
|
|====================================================================== | 88%
|
|======================================================================== | 90%
|
|========================================================================== | 92%
|
|=========================================================================== | 94%
|
|============================================================================= | 96%
|
|============================================================================== | 98%
|
|================================================================================| 100%
... computing probabilities from permuted values ...
... done. [user: 12.802, system: 0.697, elapsed: 16.624 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 32.917, system: 1.728, elapsed: 49.270 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64