CRAN Package Check Results for Maintainer ‘Kevin R. Coombes <krc at silicovore.com>’

Last updated on 2024-09-01 07:49:31 CEST.

Package	NOTE	OK
BimodalIndex		13
ClassComparison		13
ClassDiscovery		13
CloneSeeker		13
CrossValidate	3	10
GenAlgo	2	11
integIRTy		13
Mercator	3	10
Modeler		13
NameNeedle		13
NewmanOmics		13
oompaBase		13
oompaData		13
PCDimension	3	10
plasma		13
Polychrome		13
PreProcess		13
RCytoGPS	3	10
RPointCloud		13
SIBERG	1	12
SillyPutty		13
TailRank		13
Thresher	3	10
Umpire	3	10
WayFindR	3	10

Package BimodalIndex

Current CRAN status: OK: 13

Package ClassComparison

Current CRAN status: OK: 13

Package ClassDiscovery

Current CRAN status: OK: 13

Package CloneSeeker

Current CRAN status: OK: 13

Package CrossValidate

Current CRAN status: NOTE: 3, OK: 10

Version: 2.3.4
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: CrossVal.Rd: Modeler, Modeler-class Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Package GenAlgo

Current CRAN status: NOTE: 2, OK: 11

Version: 2.2.0
Check: data for non-ASCII characters
Result: NOTE Note: found 17 marked UTF-8 strings Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Package integIRTy

Current CRAN status: OK: 13

Package Mercator

Current CRAN status: NOTE: 3, OK: 10

Version: 1.1.4
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: Mercator-class.Rd: Rtsne, som, silhouette, umap coloring.Rd: remap, Thresher threshLGF.Rd: Thresher Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Package Modeler

Current CRAN status: OK: 13

Package NameNeedle

Current CRAN status: OK: 13

Package NewmanOmics

Current CRAN status: OK: 13

Package oompaBase

Current CRAN status: OK: 13

Package oompaData

Current CRAN status: OK: 13

Package PCDimension

Current CRAN status: NOTE: 3, OK: 10

Version: 1.1.13
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: agfun.Rd: detectChangePointBatch, specc, cpt.mean brokenStick.Rd: SamplePCA spca-data.Rd: SamplePCA Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Package plasma

Current CRAN status: OK: 13

Package Polychrome

Current CRAN status: OK: 13

Package PreProcess

Current CRAN status: OK: 13

Package RCytoGPS

Current CRAN status: NOTE: 3, OK: 10

Version: 1.2.5
Check: tests
Result: NOTE Running ‘test01-chrom.R’ Comparing ‘test01-chrom.Rout’ to ‘test01-chrom.Rout.save’ ... OK Running ‘test02-gb.R’ Comparing ‘test02-gb.Rout’ to ‘test02-gb.Rout.save’ ... OK Running ‘test03-objects.R’ [50s/118s] Comparing ‘test03-objects.Rout’ to ‘test03-objects.Rout.save’ ... OK Running ‘test100-read.R’ Comparing ‘test100-read.Rout’ to ‘test100-read.Rout.save’ ...12c12 < Reading 1 file(s) from '/data/gannet/ripley/R/packages/tests-clang/RCytoGPS.Rcheck/RCytoGPS/Examples/JSONfiles'. --- > Reading 1 file(s) from 'C:/Users/KRC/Desktop/RForge/thresher/pkg/RCytoGPS.Rcheck/RCytoGPS/Examples/JSONfiles'. 45c45 < Reading 2 file(s) from '/data/gannet/ripley/R/packages/tests-clang/RCytoGPS.Rcheck/RCytoGPS/Examples/JSONfiles'. --- > Reading 2 file(s) from 'C:/Users/KRC/Desktop/RForge/thresher/pkg/RCytoGPS.Rcheck/RCytoGPS/Examples/JSONfiles'. Running ‘test101-preclean.R’ Comparing ‘test101-preclean.Rout’ to ‘test101-preclean.Rout.save’ ... OK Running ‘testclip.R’ Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.2.5
Check: tests
Result: NOTE Running ‘test01-chrom.R’ Comparing ‘test01-chrom.Rout’ to ‘test01-chrom.Rout.save’ ... OK Running ‘test02-gb.R’ Comparing ‘test02-gb.Rout’ to ‘test02-gb.Rout.save’ ... OK Running ‘test03-objects.R’ [51s/130s] Comparing ‘test03-objects.Rout’ to ‘test03-objects.Rout.save’ ... OK Running ‘test100-read.R’ Comparing ‘test100-read.Rout’ to ‘test100-read.Rout.save’ ...12c12 < Reading 1 file(s) from '/data/gannet/ripley/R/packages/tests-devel/RCytoGPS.Rcheck/RCytoGPS/Examples/JSONfiles'. --- > Reading 1 file(s) from 'C:/Users/KRC/Desktop/RForge/thresher/pkg/RCytoGPS.Rcheck/RCytoGPS/Examples/JSONfiles'. 45c45 < Reading 2 file(s) from '/data/gannet/ripley/R/packages/tests-devel/RCytoGPS.Rcheck/RCytoGPS/Examples/JSONfiles'. --- > Reading 2 file(s) from 'C:/Users/KRC/Desktop/RForge/thresher/pkg/RCytoGPS.Rcheck/RCytoGPS/Examples/JSONfiles'. Running ‘test101-preclean.R’ Comparing ‘test101-preclean.Rout’ to ‘test101-preclean.Rout.save’ ... OK Running ‘testclip.R’ Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.2.5
Check: tests
Result: NOTE Running 'test01-chrom.R' [0s] Comparing 'test01-chrom.Rout' to 'test01-chrom.Rout.save' ... OK Running 'test02-gb.R' [0s] Comparing 'test02-gb.Rout' to 'test02-gb.Rout.save' ... OK Running 'test03-objects.R' [35s] Comparing 'test03-objects.Rout' to 'test03-objects.Rout.save' ... OK Running 'test100-read.R' [1s] Comparing 'test100-read.Rout' to 'test100-read.Rout.save' ...12c12 < Reading 1 file(s) from 'D:/RCompile/CRANpkg/lib/4.5/RCytoGPS/Examples/JSONfiles'. --- > Reading 1 file(s) from 'C:/Users/KRC/Desktop/RForge/thresher/pkg/RCytoGPS.Rcheck/RCytoGPS/Examples/JSONfiles'. 45c45 < Reading 2 file(s) from 'D:/RCompile/CRANpkg/lib/4.5/RCytoGPS/Examples/JSONfiles'. --- > Reading 2 file(s) from 'C:/Users/KRC/Desktop/RForge/thresher/pkg/RCytoGPS.Rcheck/RCytoGPS/Examples/JSONfiles'. Running 'test101-preclean.R' [0s] Comparing 'test101-preclean.Rout' to 'test101-preclean.Rout.save' ... OK Running 'testclip.R' [1s] Flavor: r-devel-windows-x86_64

Package RPointCloud

Current CRAN status: OK: 13

Package SIBERG

Current CRAN status: NOTE: 1, OK: 12

Version: 2.0.3
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘edgeR’ Flavor: r-oldrel-macos-x86_64

Version: 2.0.3
Check: re-building of vignette outputs
Result: NOTE Note: skipping ‘SIBER.Rnw’ due to unavailable dependencies: 'edgeR' Flavor: r-oldrel-macos-x86_64

Package SillyPutty

Current CRAN status: OK: 13

Package TailRank

Current CRAN status: OK: 13

Package Thresher

Current CRAN status: NOTE: 3, OK: 10

Version: 1.1.4
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: Reaper-class.Rd: distanceMatrix, PCDimension SimThresher-class.Rd: AuerGervini Thresher-class.Rd: distanceMatrix, AuerGervini, PCDimension, AuerGervini-class matchLabels.Rd: distanceMatrix Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Package Umpire

Current CRAN status: NOTE: 3, OK: 10

Version: 2.0.10
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: e31-setDataTypes.Rd: daisy Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Package WayFindR

Current CRAN status: NOTE: 3, OK: 10

Version: 0.1.2
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: 02-util.Rd: xmlParseDoc, igraph 03-main.Rd: igraph, plot.igraph Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64