Last updated on 2024-09-01 07:49:31 CEST.
Package | NOTE | OK |
---|---|---|
BimodalIndex | 13 | |
ClassComparison | 13 | |
ClassDiscovery | 13 | |
CloneSeeker | 13 | |
CrossValidate | 3 | 10 |
GenAlgo | 2 | 11 |
integIRTy | 13 | |
Mercator | 3 | 10 |
Modeler | 13 | |
NameNeedle | 13 | |
NewmanOmics | 13 | |
oompaBase | 13 | |
oompaData | 13 | |
PCDimension | 3 | 10 |
plasma | 13 | |
Polychrome | 13 | |
PreProcess | 13 | |
RCytoGPS | 3 | 10 |
RPointCloud | 13 | |
SIBERG | 1 | 12 |
SillyPutty | 13 | |
TailRank | 13 | |
Thresher | 3 | 10 |
Umpire | 3 | 10 |
WayFindR | 3 | 10 |
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 3, OK: 10
Version: 2.3.4
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
CrossVal.Rd: Modeler, Modeler-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Current CRAN status: NOTE: 2, OK: 11
Version: 2.2.0
Check: data for non-ASCII characters
Result: NOTE
Note: found 17 marked UTF-8 strings
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Current CRAN status: OK: 13
Current CRAN status: NOTE: 3, OK: 10
Version: 1.1.4
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
Mercator-class.Rd: Rtsne, som, silhouette, umap
coloring.Rd: remap, Thresher
threshLGF.Rd: Thresher
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 3, OK: 10
Version: 1.1.13
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
agfun.Rd: detectChangePointBatch, specc, cpt.mean
brokenStick.Rd: SamplePCA
spca-data.Rd: SamplePCA
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 3, OK: 10
Version: 1.2.5
Check: tests
Result: NOTE
Running ‘test01-chrom.R’
Comparing ‘test01-chrom.Rout’ to ‘test01-chrom.Rout.save’ ... OK
Running ‘test02-gb.R’
Comparing ‘test02-gb.Rout’ to ‘test02-gb.Rout.save’ ... OK
Running ‘test03-objects.R’ [50s/118s]
Comparing ‘test03-objects.Rout’ to ‘test03-objects.Rout.save’ ... OK
Running ‘test100-read.R’
Comparing ‘test100-read.Rout’ to ‘test100-read.Rout.save’ ...12c12
< Reading 1 file(s) from '/data/gannet/ripley/R/packages/tests-clang/RCytoGPS.Rcheck/RCytoGPS/Examples/JSONfiles'.
---
> Reading 1 file(s) from 'C:/Users/KRC/Desktop/RForge/thresher/pkg/RCytoGPS.Rcheck/RCytoGPS/Examples/JSONfiles'.
45c45
< Reading 2 file(s) from '/data/gannet/ripley/R/packages/tests-clang/RCytoGPS.Rcheck/RCytoGPS/Examples/JSONfiles'.
---
> Reading 2 file(s) from 'C:/Users/KRC/Desktop/RForge/thresher/pkg/RCytoGPS.Rcheck/RCytoGPS/Examples/JSONfiles'.
Running ‘test101-preclean.R’
Comparing ‘test101-preclean.Rout’ to ‘test101-preclean.Rout.save’ ... OK
Running ‘testclip.R’
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.2.5
Check: tests
Result: NOTE
Running ‘test01-chrom.R’
Comparing ‘test01-chrom.Rout’ to ‘test01-chrom.Rout.save’ ... OK
Running ‘test02-gb.R’
Comparing ‘test02-gb.Rout’ to ‘test02-gb.Rout.save’ ... OK
Running ‘test03-objects.R’ [51s/130s]
Comparing ‘test03-objects.Rout’ to ‘test03-objects.Rout.save’ ... OK
Running ‘test100-read.R’
Comparing ‘test100-read.Rout’ to ‘test100-read.Rout.save’ ...12c12
< Reading 1 file(s) from '/data/gannet/ripley/R/packages/tests-devel/RCytoGPS.Rcheck/RCytoGPS/Examples/JSONfiles'.
---
> Reading 1 file(s) from 'C:/Users/KRC/Desktop/RForge/thresher/pkg/RCytoGPS.Rcheck/RCytoGPS/Examples/JSONfiles'.
45c45
< Reading 2 file(s) from '/data/gannet/ripley/R/packages/tests-devel/RCytoGPS.Rcheck/RCytoGPS/Examples/JSONfiles'.
---
> Reading 2 file(s) from 'C:/Users/KRC/Desktop/RForge/thresher/pkg/RCytoGPS.Rcheck/RCytoGPS/Examples/JSONfiles'.
Running ‘test101-preclean.R’
Comparing ‘test101-preclean.Rout’ to ‘test101-preclean.Rout.save’ ... OK
Running ‘testclip.R’
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.2.5
Check: tests
Result: NOTE
Running 'test01-chrom.R' [0s]
Comparing 'test01-chrom.Rout' to 'test01-chrom.Rout.save' ... OK
Running 'test02-gb.R' [0s]
Comparing 'test02-gb.Rout' to 'test02-gb.Rout.save' ... OK
Running 'test03-objects.R' [35s]
Comparing 'test03-objects.Rout' to 'test03-objects.Rout.save' ... OK
Running 'test100-read.R' [1s]
Comparing 'test100-read.Rout' to 'test100-read.Rout.save' ...12c12
< Reading 1 file(s) from 'D:/RCompile/CRANpkg/lib/4.5/RCytoGPS/Examples/JSONfiles'.
---
> Reading 1 file(s) from 'C:/Users/KRC/Desktop/RForge/thresher/pkg/RCytoGPS.Rcheck/RCytoGPS/Examples/JSONfiles'.
45c45
< Reading 2 file(s) from 'D:/RCompile/CRANpkg/lib/4.5/RCytoGPS/Examples/JSONfiles'.
---
> Reading 2 file(s) from 'C:/Users/KRC/Desktop/RForge/thresher/pkg/RCytoGPS.Rcheck/RCytoGPS/Examples/JSONfiles'.
Running 'test101-preclean.R' [0s]
Comparing 'test101-preclean.Rout' to 'test101-preclean.Rout.save' ... OK
Running 'testclip.R' [1s]
Flavor: r-devel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: NOTE: 1, OK: 12
Version: 2.0.3
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘edgeR’
Flavor: r-oldrel-macos-x86_64
Version: 2.0.3
Check: re-building of vignette outputs
Result: NOTE
Note: skipping ‘SIBER.Rnw’ due to unavailable dependencies: 'edgeR'
Flavor: r-oldrel-macos-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 3, OK: 10
Version: 1.1.4
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
Reaper-class.Rd: distanceMatrix, PCDimension
SimThresher-class.Rd: AuerGervini
Thresher-class.Rd: distanceMatrix, AuerGervini, PCDimension,
AuerGervini-class
matchLabels.Rd: distanceMatrix
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Current CRAN status: NOTE: 3, OK: 10
Version: 2.0.10
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
e31-setDataTypes.Rd: daisy
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Current CRAN status: NOTE: 3, OK: 10
Version: 0.1.2
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
02-util.Rd: xmlParseDoc, igraph
03-main.Rd: igraph, plot.igraph
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64