Last updated on 2025-02-11 07:48:52 CET.
| Package | NOTE | OK |
|---|---|---|
| BimodalIndex | 13 | |
| ClassComparison | 13 | |
| ClassDiscovery | 5 | 8 |
| CloneSeeker | 5 | 8 |
| CrossValidate | 3 | 10 |
| GenAlgo | 13 | |
| integIRTy | 13 | |
| Mercator | 13 | |
| Modeler | 13 | |
| NameNeedle | 13 | |
| NewmanOmics | 5 | 8 |
| oompaBase | 13 | |
| oompaData | 13 | |
| PCDimension | 3 | 10 |
| plasma | 13 | |
| Polychrome | 5 | 8 |
| PreProcess | 5 | 8 |
| RCytoGPS | 13 | |
| RPointCloud | 13 | |
| SIBERG | 1 | 12 |
| SillyPutty | 13 | |
| TailRank | 13 | |
| Thresher | 3 | 10 |
| Umpire | 13 | |
| WayFindR | 3 | 10 |
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 5, OK: 8
Version: 3.4.5
Check: tests
Result: NOTE
Running ‘exprSet-example.R’ [6s/7s]
Comparing ‘exprSet-example.Rout’ to ‘exprSet-example.Rout.save’ ... OK
Running ‘test00-color.R’ [1s/1s]
Comparing ‘test00-color.Rout’ to ‘test00-color.Rout.save’ ... OK
Running ‘test01-distance.R’ [0s/1s]
Comparing ‘test01-distance.Rout’ to ‘test01-distance.Rout.save’ ... OK
Running ‘test02-cluster.R’ [1s/1s]
Comparing ‘test02-cluster.Rout’ to ‘test02-cluster.Rout.save’ ...28c28
< 3.674e-05 6.434e-02 3.529e-01 2.976e-01 5.154e-01 6.698e-01
---
> 0.0000367 0.0643374 0.3528907 0.2975618 0.5153581 0.6697706
Running ‘test02.1-just.R’ [0s/1s]
Comparing ‘test02.1-just.Rout’ to ‘test02.1-just.Rout.save’ ... OK
Running ‘test03-boot.R’ [2s/2s]
Comparing ‘test03-boot.Rout’ to ‘test03-boot.Rout.save’ ... OK
Running ‘test04-perturb.R’ [2s/2s]
Comparing ‘test04-perturb.Rout’ to ‘test04-perturb.Rout.save’ ... OK
Running ‘test04.1-gpca.R’ [1s/1s]
Comparing ‘test04.1-gpca.Rout’ to ‘test04.1-gpca.Rout.save’ ... OK
Running ‘test05-spca.R’ [1s/1s]
Comparing ‘test05-spca.Rout’ to ‘test05-spca.Rout.save’ ... OK
Running ‘test06-mosaic.R’ [1s/2s]
Comparing ‘test06-mosaic.Rout’ to ‘test06-mosaic.Rout.save’ ... OK
Running ‘test07-pcanova.R’ [1s/1s]
Comparing ‘test07-pcanova.Rout’ to ‘test07-pcanova.Rout.save’ ... OK
Flavor: r-devel-linux-x86_64-debian-clang
Version: 3.4.5
Check: tests
Result: NOTE
Running ‘exprSet-example.R’ [4s/5s]
Comparing ‘exprSet-example.Rout’ to ‘exprSet-example.Rout.save’ ... OK
Running ‘test00-color.R’ [0s/1s]
Comparing ‘test00-color.Rout’ to ‘test00-color.Rout.save’ ... OK
Running ‘test01-distance.R’ [0s/1s]
Comparing ‘test01-distance.Rout’ to ‘test01-distance.Rout.save’ ... OK
Running ‘test02-cluster.R’ [1s/1s]
Comparing ‘test02-cluster.Rout’ to ‘test02-cluster.Rout.save’ ...28c28
< 3.674e-05 6.434e-02 3.529e-01 2.976e-01 5.154e-01 6.698e-01
---
> 0.0000367 0.0643374 0.3528907 0.2975618 0.5153581 0.6697706
Running ‘test02.1-just.R’ [0s/0s]
Comparing ‘test02.1-just.Rout’ to ‘test02.1-just.Rout.save’ ... OK
Running ‘test03-boot.R’ [1s/1s]
Comparing ‘test03-boot.Rout’ to ‘test03-boot.Rout.save’ ... OK
Running ‘test04-perturb.R’ [1s/2s]
Comparing ‘test04-perturb.Rout’ to ‘test04-perturb.Rout.save’ ... OK
Running ‘test04.1-gpca.R’ [0s/0s]
Comparing ‘test04.1-gpca.Rout’ to ‘test04.1-gpca.Rout.save’ ... OK
Running ‘test05-spca.R’ [0s/1s]
Comparing ‘test05-spca.Rout’ to ‘test05-spca.Rout.save’ ... OK
Running ‘test06-mosaic.R’ [1s/1s]
Comparing ‘test06-mosaic.Rout’ to ‘test06-mosaic.Rout.save’ ... OK
Running ‘test07-pcanova.R’ [0s/1s]
Comparing ‘test07-pcanova.Rout’ to ‘test07-pcanova.Rout.save’ ... OK
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 3.4.5
Check: tests
Result: NOTE
Running ‘exprSet-example.R’ [9s/11s]
Comparing ‘exprSet-example.Rout’ to ‘exprSet-example.Rout.save’ ... OK
Running ‘test00-color.R’
Comparing ‘test00-color.Rout’ to ‘test00-color.Rout.save’ ... OK
Running ‘test01-distance.R’
Comparing ‘test01-distance.Rout’ to ‘test01-distance.Rout.save’ ... OK
Running ‘test02-cluster.R’
Comparing ‘test02-cluster.Rout’ to ‘test02-cluster.Rout.save’ ...28c28
< 3.674e-05 6.434e-02 3.529e-01 2.976e-01 5.154e-01 6.698e-01
---
> 0.0000367 0.0643374 0.3528907 0.2975618 0.5153581 0.6697706
Running ‘test02.1-just.R’
Comparing ‘test02.1-just.Rout’ to ‘test02.1-just.Rout.save’ ... OK
Running ‘test03-boot.R’
Comparing ‘test03-boot.Rout’ to ‘test03-boot.Rout.save’ ... OK
Running ‘test04-perturb.R’
Comparing ‘test04-perturb.Rout’ to ‘test04-perturb.Rout.save’ ... OK
Running ‘test04.1-gpca.R’
Comparing ‘test04.1-gpca.Rout’ to ‘test04.1-gpca.Rout.save’ ... OK
Running ‘test05-spca.R’
Comparing ‘test05-spca.Rout’ to ‘test05-spca.Rout.save’ ... OK
Running ‘test06-mosaic.R’
Comparing ‘test06-mosaic.Rout’ to ‘test06-mosaic.Rout.save’ ... OK
Running ‘test07-pcanova.R’
Comparing ‘test07-pcanova.Rout’ to ‘test07-pcanova.Rout.save’ ... OK
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 3.4.5
Check: tests
Result: NOTE
Running ‘exprSet-example.R’ [9s/13s]
Comparing ‘exprSet-example.Rout’ to ‘exprSet-example.Rout.save’ ... OK
Running ‘test00-color.R’
Comparing ‘test00-color.Rout’ to ‘test00-color.Rout.save’ ... OK
Running ‘test01-distance.R’
Comparing ‘test01-distance.Rout’ to ‘test01-distance.Rout.save’ ... OK
Running ‘test02-cluster.R’
Comparing ‘test02-cluster.Rout’ to ‘test02-cluster.Rout.save’ ...28c28
< 3.674e-05 6.434e-02 3.529e-01 2.976e-01 5.154e-01 6.698e-01
---
> 0.0000367 0.0643374 0.3528907 0.2975618 0.5153581 0.6697706
Running ‘test02.1-just.R’
Comparing ‘test02.1-just.Rout’ to ‘test02.1-just.Rout.save’ ... OK
Running ‘test03-boot.R’
Comparing ‘test03-boot.Rout’ to ‘test03-boot.Rout.save’ ... OK
Running ‘test04-perturb.R’
Comparing ‘test04-perturb.Rout’ to ‘test04-perturb.Rout.save’ ... OK
Running ‘test04.1-gpca.R’
Comparing ‘test04.1-gpca.Rout’ to ‘test04.1-gpca.Rout.save’ ... OK
Running ‘test05-spca.R’
Comparing ‘test05-spca.Rout’ to ‘test05-spca.Rout.save’ ... OK
Running ‘test06-mosaic.R’
Comparing ‘test06-mosaic.Rout’ to ‘test06-mosaic.Rout.save’ ... OK
Running ‘test07-pcanova.R’
Comparing ‘test07-pcanova.Rout’ to ‘test07-pcanova.Rout.save’ ... OK
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 3.4.5
Check: tests
Result: NOTE
Running 'exprSet-example.R' [5s]
Comparing 'exprSet-example.Rout' to 'exprSet-example.Rout.save' ... OK
Running 'test00-color.R' [1s]
Comparing 'test00-color.Rout' to 'test00-color.Rout.save' ... OK
Running 'test01-distance.R' [1s]
Comparing 'test01-distance.Rout' to 'test01-distance.Rout.save' ... OK
Running 'test02-cluster.R' [1s]
Comparing 'test02-cluster.Rout' to 'test02-cluster.Rout.save' ...28c28
< 3.674e-05 6.434e-02 3.529e-01 2.976e-01 5.154e-01 6.698e-01
---
> 0.0000367 0.0643374 0.3528907 0.2975618 0.5153581 0.6697706
Running 'test02.1-just.R' [0s]
Comparing 'test02.1-just.Rout' to 'test02.1-just.Rout.save' ... OK
Running 'test03-boot.R' [2s]
Comparing 'test03-boot.Rout' to 'test03-boot.Rout.save' ... OK
Running 'test04-perturb.R' [2s]
Comparing 'test04-perturb.Rout' to 'test04-perturb.Rout.save' ... OK
Running 'test04.1-gpca.R' [1s]
Comparing 'test04.1-gpca.Rout' to 'test04.1-gpca.Rout.save' ... OK
Running 'test05-spca.R' [1s]
Comparing 'test05-spca.Rout' to 'test05-spca.Rout.save' ... OK
Running 'test06-mosaic.R' [1s]
Comparing 'test06-mosaic.Rout' to 'test06-mosaic.Rout.save' ... OK
Running 'test07-pcanova.R' [1s]
Comparing 'test07-pcanova.Rout' to 'test07-pcanova.Rout.save' ... OK
Flavor: r-devel-windows-x86_64
Current CRAN status: NOTE: 5, OK: 8
Version: 1.0.11
Check: tests
Result: NOTE
Running ‘test01-Simplex.R’ [2s/2s]
Comparing ‘test01-Simplex.Rout’ to ‘test01-Simplex.Rout.save’ ... OK
Running ‘test02-WV.R’ [2s/2s]
Comparing ‘test02-WV.Rout’ to ‘test02-WV.Rout.save’ ... OK
Running ‘test03-simulate.R’ [34s/42s]
Comparing ‘test03-simulate.Rout’ to ‘test03-simulate.Rout.save’ ...213c213
< 3rd Qu.:14.000 3rd Qu.:265.75 3rd Qu.: 0.0029188 3rd Qu.:0.5005
---
> 3rd Qu.:14.000 3rd Qu.:265.75 3rd Qu.: 0.0029187 3rd Qu.:0.5005
Running ‘test04-algorithm.R’ [92s/108s]
Comparing ‘test04-algorithm.Rout’ to ‘test04-algorithm.Rout.save’ ...177c177
< Max. :2.002 Max. :0.9989221 Max. :2747
---
> Max. :2.002 Max. :0.9989222 Max. :2747
238c238
< Mean : 7.286 Mean :184.3 Mean : 0.03329 Mean :0.5902
---
> Mean : 7.286 Mean :184.3 Mean : 0.03329 Mean :0.5903
244c244
< Median :1.0415 Median :1.0144845 Median :1352
---
> Median :1.0415 Median :1.0144844 Median :1352
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.0.11
Check: tests
Result: NOTE
Running ‘test01-Simplex.R’ [1s/2s]
Comparing ‘test01-Simplex.Rout’ to ‘test01-Simplex.Rout.save’ ... OK
Running ‘test02-WV.R’ [1s/2s]
Comparing ‘test02-WV.Rout’ to ‘test02-WV.Rout.save’ ... OK
Running ‘test03-simulate.R’ [21s/27s]
Comparing ‘test03-simulate.Rout’ to ‘test03-simulate.Rout.save’ ...213c213
< 3rd Qu.:14.000 3rd Qu.:265.75 3rd Qu.: 0.0029188 3rd Qu.:0.5005
---
> 3rd Qu.:14.000 3rd Qu.:265.75 3rd Qu.: 0.0029187 3rd Qu.:0.5005
Running ‘test04-algorithm.R’ [54s/64s]
Comparing ‘test04-algorithm.Rout’ to ‘test04-algorithm.Rout.save’ ...177c177
< Max. :2.002 Max. :0.9989221 Max. :2747
---
> Max. :2.002 Max. :0.9989222 Max. :2747
238c238
< Mean : 7.286 Mean :184.3 Mean : 0.03329 Mean :0.5902
---
> Mean : 7.286 Mean :184.3 Mean : 0.03329 Mean :0.5903
244c244
< Median :1.0415 Median :1.0144845 Median :1352
---
> Median :1.0415 Median :1.0144844 Median :1352
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.11
Check: tests
Result: NOTE
Running ‘test01-Simplex.R’
Comparing ‘test01-Simplex.Rout’ to ‘test01-Simplex.Rout.save’ ... OK
Running ‘test02-WV.R’
Comparing ‘test02-WV.Rout’ to ‘test02-WV.Rout.save’ ... OK
Running ‘test03-simulate.R’ [62s/75s]
Comparing ‘test03-simulate.Rout’ to ‘test03-simulate.Rout.save’ ...213c213
< 3rd Qu.:14.000 3rd Qu.:265.75 3rd Qu.: 0.0029188 3rd Qu.:0.5005
---
> 3rd Qu.:14.000 3rd Qu.:265.75 3rd Qu.: 0.0029187 3rd Qu.:0.5005
Running ‘test04-algorithm.R’ [167s/176s]
Comparing ‘test04-algorithm.Rout’ to ‘test04-algorithm.Rout.save’ ...177c177
< Max. :2.002 Max. :0.9989221 Max. :2747
---
> Max. :2.002 Max. :0.9989222 Max. :2747
238c238
< Mean : 7.286 Mean :184.3 Mean : 0.03329 Mean :0.5902
---
> Mean : 7.286 Mean :184.3 Mean : 0.03329 Mean :0.5903
244c244
< Median :1.0415 Median :1.0144845 Median :1352
---
> Median :1.0415 Median :1.0144844 Median :1352
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.0.11
Check: tests
Result: NOTE
Running ‘test01-Simplex.R’
Comparing ‘test01-Simplex.Rout’ to ‘test01-Simplex.Rout.save’ ... OK
Running ‘test02-WV.R’
Comparing ‘test02-WV.Rout’ to ‘test02-WV.Rout.save’ ... OK
Running ‘test03-simulate.R’ [56s/72s]
Comparing ‘test03-simulate.Rout’ to ‘test03-simulate.Rout.save’ ...213c213
< 3rd Qu.:14.000 3rd Qu.:265.75 3rd Qu.: 0.0029188 3rd Qu.:0.5005
---
> 3rd Qu.:14.000 3rd Qu.:265.75 3rd Qu.: 0.0029187 3rd Qu.:0.5005
Running ‘test04-algorithm.R’ [149s/188s]
Comparing ‘test04-algorithm.Rout’ to ‘test04-algorithm.Rout.save’ ...177c177
< Max. :2.002 Max. :0.9989221 Max. :2747
---
> Max. :2.002 Max. :0.9989222 Max. :2747
238c238
< Mean : 7.286 Mean :184.3 Mean : 0.03329 Mean :0.5902
---
> Mean : 7.286 Mean :184.3 Mean : 0.03329 Mean :0.5903
244c244
< Median :1.0415 Median :1.0144845 Median :1352
---
> Median :1.0415 Median :1.0144844 Median :1352
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.0.11
Check: tests
Result: NOTE
Running 'test01-Simplex.R' [2s]
Comparing 'test01-Simplex.Rout' to 'test01-Simplex.Rout.save' ... OK
Running 'test02-WV.R' [2s]
Comparing 'test02-WV.Rout' to 'test02-WV.Rout.save' ... OK
Running 'test03-simulate.R' [27s]
Comparing 'test03-simulate.Rout' to 'test03-simulate.Rout.save' ...213c213
< 3rd Qu.:14.000 3rd Qu.:265.75 3rd Qu.: 0.0029188 3rd Qu.:0.5005
---
> 3rd Qu.:14.000 3rd Qu.:265.75 3rd Qu.: 0.0029187 3rd Qu.:0.5005
Running 'test04-algorithm.R' [71s]
Comparing 'test04-algorithm.Rout' to 'test04-algorithm.Rout.save' ...177c177
< Max. :2.002 Max. :0.9989221 Max. :2747
---
> Max. :2.002 Max. :0.9989222 Max. :2747
238c238
< Mean : 7.286 Mean :184.3 Mean : 0.03329 Mean :0.5902
---
> Mean : 7.286 Mean :184.3 Mean : 0.03329 Mean :0.5903
244c244
< Median :1.0415 Median :1.0144845 Median :1352
---
> Median :1.0415 Median :1.0144844 Median :1352
Flavor: r-devel-windows-x86_64
Current CRAN status: NOTE: 3, OK: 10
Version: 2.3.4
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
CrossVal.Rd: Modeler, Modeler-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 5, OK: 8
Version: 1.0.11
Check: tests
Result: NOTE
Running ‘00-pairedTest.R’ [11s/15s]
Comparing ‘00-pairedTest.Rout’ to ‘00-pairedTest.Rout.save’ ... OK
Running ‘01-bankedTest.R’ [2s/3s]
Comparing ‘01-bankedTest.Rout’ to ‘01-bankedTest.Rout.save’ ...26c26
< Max. : 5.87034 Max. : 8.5824 Max. : 8.547029
---
> Max. : 5.87033 Max. : 8.5824 Max. : 8.547029
Running ‘03-betamix.R’ [7s/10s]
Comparing ‘03-betamix.Rout’ to ‘03-betamix.Rout.save’ ... OK
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.0.11
Check: tests
Result: NOTE
Running ‘00-pairedTest.R’ [8s/10s]
Comparing ‘00-pairedTest.Rout’ to ‘00-pairedTest.Rout.save’ ... OK
Running ‘01-bankedTest.R’ [2s/2s]
Comparing ‘01-bankedTest.Rout’ to ‘01-bankedTest.Rout.save’ ...26c26
< Max. : 5.87034 Max. : 8.5824 Max. : 8.547029
---
> Max. : 5.87033 Max. : 8.5824 Max. : 8.547029
Running ‘03-betamix.R’ [5s/7s]
Comparing ‘03-betamix.Rout’ to ‘03-betamix.Rout.save’ ...25c25
< Inf replaced by maximum positive value
---
> NA/Inf replaced by maximum positive value
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.11
Check: tests
Result: NOTE
Running ‘00-pairedTest.R’ [18s/40s]
Comparing ‘00-pairedTest.Rout’ to ‘00-pairedTest.Rout.save’ ... OK
Running ‘01-bankedTest.R’
Comparing ‘01-bankedTest.Rout’ to ‘01-bankedTest.Rout.save’ ...26c26
< Max. : 5.87034 Max. : 8.5824 Max. : 8.547029
---
> Max. : 5.87033 Max. : 8.5824 Max. : 8.547029
Running ‘03-betamix.R’ [12s/21s]
Comparing ‘03-betamix.Rout’ to ‘03-betamix.Rout.save’ ...25c25
< Inf replaced by maximum positive value
---
> NA/Inf replaced by maximum positive value
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.0.11
Check: tests
Result: NOTE
Running ‘00-pairedTest.R’ [17s/26s]
Comparing ‘00-pairedTest.Rout’ to ‘00-pairedTest.Rout.save’ ... OK
Running ‘01-bankedTest.R’
Comparing ‘01-bankedTest.Rout’ to ‘01-bankedTest.Rout.save’ ...26c26
< Max. : 5.87034 Max. : 8.5824 Max. : 8.547029
---
> Max. : 5.87033 Max. : 8.5824 Max. : 8.547029
Running ‘03-betamix.R’ [11s/11s]
Comparing ‘03-betamix.Rout’ to ‘03-betamix.Rout.save’ ...25c25
< Inf replaced by maximum positive value
---
> NA/Inf replaced by maximum positive value
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.0.11
Check: tests
Result: NOTE
Running '00-pairedTest.R' [10s]
Comparing '00-pairedTest.Rout' to '00-pairedTest.Rout.save' ... OK
Running '01-bankedTest.R' [2s]
Comparing '01-bankedTest.Rout' to '01-bankedTest.Rout.save' ...26c26
< Max. : 5.87034 Max. : 8.5824 Max. : 8.547029
---
> Max. : 5.87033 Max. : 8.5824 Max. : 8.547029
Running '03-betamix.R' [9s]
Comparing '03-betamix.Rout' to '03-betamix.Rout.save' ...25c25
< Inf replaced by maximum positive value
---
> NA/Inf replaced by maximum positive value
Flavor: r-devel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 3, OK: 10
Version: 1.1.13
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
agfun.Rd: detectChangePointBatch, specc, cpt.mean
brokenStick.Rd: SamplePCA
spca-data.Rd: SamplePCA
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: NOTE: 5, OK: 8
Version: 1.5.1
Check: tests
Result: NOTE
Running ‘test-07-member.R’ [0s/1s]
Running ‘testDeficit.R’ [3s/4s]
Comparing ‘testDeficit.Rout’ to ‘testDeficit.Rout.save’ ...100,105c100,105
< Min. :-8.190e-06 Min. :-0.0278874 Min. :-6.800e-03
< 1st Qu.: 0.000e+00 1st Qu.:-0.0000158 1st Qu.:-6.298e-06
< Median : 0.000e+00 Median : 0.0000000 Median : 4.575e-03
< Mean : 1.111e-02 Mean :-0.0011243 Mean : 1.963e-02
< 3rd Qu.: 0.000e+00 3rd Qu.: 0.0000000 3rd Qu.: 4.788e-02
< Max. : 4.000e-01 Max. : 0.0316256 Max. : 5.996e-02
---
> Min. :-0.0000082 Min. :-2.789e-02 Min. :-0.0067999
> 1st Qu.: 0.0000000 1st Qu.:-1.579e-05 1st Qu.:-0.0000063
> Median : 0.0000000 Median : 0.000e+00 Median : 0.0045747
> Mean : 0.0111090 Mean :-1.124e-03 Mean : 0.0196263
> 3rd Qu.: 0.0000000 3rd Qu.: 0.000e+00 3rd Qu.: 0.0478768
> Max. : 0.3999611 Max. : 3.163e-02 Max. : 0.0599644
Running ‘testXform.R’ [1s/1s]
Comparing ‘testXform.Rout’ to ‘testXform.Rout.save’ ... OK
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.5.1
Check: tests
Result: NOTE
Running ‘test-07-member.R’ [0s/1s]
Running ‘testDeficit.R’ [2s/3s]
Comparing ‘testDeficit.Rout’ to ‘testDeficit.Rout.save’ ...100,105c100,105
< Min. :-8.190e-06 Min. :-0.0278874 Min. :-6.800e-03
< 1st Qu.: 0.000e+00 1st Qu.:-0.0000158 1st Qu.:-6.298e-06
< Median : 0.000e+00 Median : 0.0000000 Median : 4.575e-03
< Mean : 1.111e-02 Mean :-0.0011243 Mean : 1.963e-02
< 3rd Qu.: 0.000e+00 3rd Qu.: 0.0000000 3rd Qu.: 4.788e-02
< Max. : 4.000e-01 Max. : 0.0316256 Max. : 5.996e-02
---
> Min. :-0.0000082 Min. :-2.789e-02 Min. :-0.0067999
> 1st Qu.: 0.0000000 1st Qu.:-1.579e-05 1st Qu.:-0.0000063
> Median : 0.0000000 Median : 0.000e+00 Median : 0.0045747
> Mean : 0.0111090 Mean :-1.124e-03 Mean : 0.0196263
> 3rd Qu.: 0.0000000 3rd Qu.: 0.000e+00 3rd Qu.: 0.0478768
> Max. : 0.3999611 Max. : 3.163e-02 Max. : 0.0599644
Running ‘testXform.R’ [0s/1s]
Comparing ‘testXform.Rout’ to ‘testXform.Rout.save’ ... OK
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.5.1
Check: tests
Result: NOTE
Running ‘test-07-member.R’
Running ‘testDeficit.R’ [6s/11s]
Comparing ‘testDeficit.Rout’ to ‘testDeficit.Rout.save’ ...100,105c100,105
< Min. :-8.190e-06 Min. :-0.0278874 Min. :-6.800e-03
< 1st Qu.: 0.000e+00 1st Qu.:-0.0000158 1st Qu.:-6.298e-06
< Median : 0.000e+00 Median : 0.0000000 Median : 4.575e-03
< Mean : 1.111e-02 Mean :-0.0011243 Mean : 1.963e-02
< 3rd Qu.: 0.000e+00 3rd Qu.: 0.0000000 3rd Qu.: 4.788e-02
< Max. : 4.000e-01 Max. : 0.0316256 Max. : 5.996e-02
---
> Min. :-0.0000082 Min. :-2.789e-02 Min. :-0.0067999
> 1st Qu.: 0.0000000 1st Qu.:-1.579e-05 1st Qu.:-0.0000063
> Median : 0.0000000 Median : 0.000e+00 Median : 0.0045747
> Mean : 0.0111090 Mean :-1.124e-03 Mean : 0.0196263
> 3rd Qu.: 0.0000000 3rd Qu.: 0.000e+00 3rd Qu.: 0.0478768
> Max. : 0.3999611 Max. : 3.163e-02 Max. : 0.0599644
Running ‘testXform.R’
Comparing ‘testXform.Rout’ to ‘testXform.Rout.save’ ... OK
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.5.1
Check: tests
Result: NOTE
Running ‘test-07-member.R’
Running ‘testDeficit.R’
Comparing ‘testDeficit.Rout’ to ‘testDeficit.Rout.save’ ...100,105c100,105
< Min. :-8.190e-06 Min. :-0.0278874 Min. :-6.800e-03
< 1st Qu.: 0.000e+00 1st Qu.:-0.0000158 1st Qu.:-6.298e-06
< Median : 0.000e+00 Median : 0.0000000 Median : 4.575e-03
< Mean : 1.111e-02 Mean :-0.0011243 Mean : 1.963e-02
< 3rd Qu.: 0.000e+00 3rd Qu.: 0.0000000 3rd Qu.: 4.788e-02
< Max. : 4.000e-01 Max. : 0.0316256 Max. : 5.996e-02
---
> Min. :-0.0000082 Min. :-2.789e-02 Min. :-0.0067999
> 1st Qu.: 0.0000000 1st Qu.:-1.579e-05 1st Qu.:-0.0000063
> Median : 0.0000000 Median : 0.000e+00 Median : 0.0045747
> Mean : 0.0111090 Mean :-1.124e-03 Mean : 0.0196263
> 3rd Qu.: 0.0000000 3rd Qu.: 0.000e+00 3rd Qu.: 0.0478768
> Max. : 0.3999611 Max. : 3.163e-02 Max. : 0.0599644
Running ‘testXform.R’
Comparing ‘testXform.Rout’ to ‘testXform.Rout.save’ ... OK
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.5.1
Check: tests
Result: NOTE
Running 'test-07-member.R' [1s]
Running 'testDeficit.R' [2s]
Comparing 'testDeficit.Rout' to 'testDeficit.Rout.save' ...100,105c100,105
< Min. :-8.190e-06 Min. :-0.0278874 Min. :-6.800e-03
< 1st Qu.: 0.000e+00 1st Qu.:-0.0000158 1st Qu.:-6.298e-06
< Median : 0.000e+00 Median : 0.0000000 Median : 4.575e-03
< Mean : 1.111e-02 Mean :-0.0011243 Mean : 1.963e-02
< 3rd Qu.: 0.000e+00 3rd Qu.: 0.0000000 3rd Qu.: 4.788e-02
< Max. : 4.000e-01 Max. : 0.0316256 Max. : 5.996e-02
---
> Min. :-0.0000082 Min. :-2.789e-02 Min. :-0.0067999
> 1st Qu.: 0.0000000 1st Qu.:-1.579e-05 1st Qu.:-0.0000063
> Median : 0.0000000 Median : 0.000e+00 Median : 0.0045747
> Mean : 0.0111090 Mean :-1.124e-03 Mean : 0.0196263
> 3rd Qu.: 0.0000000 3rd Qu.: 0.000e+00 3rd Qu.: 0.0478768
> Max. : 0.3999611 Max. : 3.163e-02 Max. : 0.0599644
Running 'testXform.R' [1s]
Comparing 'testXform.Rout' to 'testXform.Rout.save' ... OK
Flavor: r-devel-windows-x86_64
Current CRAN status: NOTE: 5, OK: 8
Version: 3.1.7
Check: tests
Result: NOTE
Running ‘test01-utility.R’ [1s/1s]
Comparing ‘test01-utility.Rout’ to ‘test01-utility.Rout.save’ ... OK
Running ‘test03-channel-type.R’ [0s/1s]
Comparing ‘test03-channel-type.Rout’ to ‘test03-channel-type.Rout.save’ ... OK
Running ‘test04-channel.R’ [1s/1s]
Comparing ‘test04-channel.Rout’ to ‘test04-channel.Rout.save’ ...42c42
< 0.2436 280.0141 675.7335 987.6435 1355.5114 9630.5918
---
> 0.244 280.014 675.734 987.643 1355.511 9630.592
Running ‘test05-processor.R’ [1s/1s]
Comparing ‘test05-processor.Rout’ to ‘test05-processor.Rout.save’ ... OK
Running ‘test06-pipeline.R’ [1s/2s]
Comparing ‘test06-pipeline.Rout’ to ‘test06-pipeline.Rout.save’ ... OK
Running ‘test07-complete-channel.R’ [1s/1s]
Comparing ‘test07-complete-channel.Rout’ to ‘test07-complete-channel.Rout.save’ ...22,27c22,27
< Min. :6.560e-02 Min. :33.61 Min. : 0.0
< 1st Qu.:2.855e+02 1st Qu.:55.95 1st Qu.: 225.7
< Median :6.874e+02 Median :60.01 Median : 626.7
< Mean :1.003e+03 Mean :59.99 Mean : 944.6
< 3rd Qu.:1.396e+03 3rd Qu.:64.07 3rd Qu.: 1336.5
< Max. :1.178e+04 Max. :85.24 Max. :11718.9
---
> Min. : 0.066 Min. :33.61 Min. : 0.0
> 1st Qu.: 285.474 1st Qu.:55.95 1st Qu.: 225.7
> Median : 687.351 Median :60.01 Median : 626.7
> Mean : 1002.718 Mean :59.99 Mean : 944.6
> 3rd Qu.: 1395.736 3rd Qu.:64.07 3rd Qu.: 1336.5
> Max. :11776.787 Max. :85.24 Max. :11718.9
Flavor: r-devel-linux-x86_64-debian-clang
Version: 3.1.7
Check: tests
Result: NOTE
Running ‘test01-utility.R’ [1s/1s]
Comparing ‘test01-utility.Rout’ to ‘test01-utility.Rout.save’ ... OK
Running ‘test03-channel-type.R’ [0s/1s]
Comparing ‘test03-channel-type.Rout’ to ‘test03-channel-type.Rout.save’ ... OK
Running ‘test04-channel.R’ [1s/1s]
Comparing ‘test04-channel.Rout’ to ‘test04-channel.Rout.save’ ...42c42
< 0.2436 280.0141 675.7335 987.6435 1355.5114 9630.5918
---
> 0.244 280.014 675.734 987.643 1355.511 9630.592
Running ‘test05-processor.R’ [1s/2s]
Comparing ‘test05-processor.Rout’ to ‘test05-processor.Rout.save’ ... OK
Running ‘test06-pipeline.R’ [1s/1s]
Comparing ‘test06-pipeline.Rout’ to ‘test06-pipeline.Rout.save’ ... OK
Running ‘test07-complete-channel.R’ [1s/1s]
Comparing ‘test07-complete-channel.Rout’ to ‘test07-complete-channel.Rout.save’ ...22,27c22,27
< Min. :6.560e-02 Min. :33.61 Min. : 0.0
< 1st Qu.:2.855e+02 1st Qu.:55.95 1st Qu.: 225.7
< Median :6.874e+02 Median :60.01 Median : 626.7
< Mean :1.003e+03 Mean :59.99 Mean : 944.6
< 3rd Qu.:1.396e+03 3rd Qu.:64.07 3rd Qu.: 1336.5
< Max. :1.178e+04 Max. :85.24 Max. :11718.9
---
> Min. : 0.066 Min. :33.61 Min. : 0.0
> 1st Qu.: 285.474 1st Qu.:55.95 1st Qu.: 225.7
> Median : 687.351 Median :60.01 Median : 626.7
> Mean : 1002.718 Mean :59.99 Mean : 944.6
> 3rd Qu.: 1395.736 3rd Qu.:64.07 3rd Qu.: 1336.5
> Max. :11776.787 Max. :85.24 Max. :11718.9
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 3.1.7
Check: tests
Result: NOTE
Running ‘test01-utility.R’
Comparing ‘test01-utility.Rout’ to ‘test01-utility.Rout.save’ ... OK
Running ‘test03-channel-type.R’
Comparing ‘test03-channel-type.Rout’ to ‘test03-channel-type.Rout.save’ ... OK
Running ‘test04-channel.R’
Comparing ‘test04-channel.Rout’ to ‘test04-channel.Rout.save’ ...42c42
< 0.2436 280.0141 675.7335 987.6435 1355.5114 9630.5918
---
> 0.244 280.014 675.734 987.643 1355.511 9630.592
Running ‘test05-processor.R’
Comparing ‘test05-processor.Rout’ to ‘test05-processor.Rout.save’ ... OK
Running ‘test06-pipeline.R’
Comparing ‘test06-pipeline.Rout’ to ‘test06-pipeline.Rout.save’ ... OK
Running ‘test07-complete-channel.R’
Comparing ‘test07-complete-channel.Rout’ to ‘test07-complete-channel.Rout.save’ ...22,27c22,27
< Min. :6.560e-02 Min. :33.61 Min. : 0.0
< 1st Qu.:2.855e+02 1st Qu.:55.95 1st Qu.: 225.7
< Median :6.874e+02 Median :60.01 Median : 626.7
< Mean :1.003e+03 Mean :59.99 Mean : 944.6
< 3rd Qu.:1.396e+03 3rd Qu.:64.07 3rd Qu.: 1336.5
< Max. :1.178e+04 Max. :85.24 Max. :11718.9
---
> Min. : 0.066 Min. :33.61 Min. : 0.0
> 1st Qu.: 285.474 1st Qu.:55.95 1st Qu.: 225.7
> Median : 687.351 Median :60.01 Median : 626.7
> Mean : 1002.718 Mean :59.99 Mean : 944.6
> 3rd Qu.: 1395.736 3rd Qu.:64.07 3rd Qu.: 1336.5
> Max. :11776.787 Max. :85.24 Max. :11718.9
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 3.1.7
Check: tests
Result: NOTE
Running 'test01-utility.R' [1s]
Comparing 'test01-utility.Rout' to 'test01-utility.Rout.save' ... OK
Running 'test03-channel-type.R' [0s]
Comparing 'test03-channel-type.Rout' to 'test03-channel-type.Rout.save' ... OK
Running 'test04-channel.R' [1s]
Comparing 'test04-channel.Rout' to 'test04-channel.Rout.save' ...42c42
< 0.2436 280.0141 675.7335 987.6435 1355.5114 9630.5918
---
> 0.244 280.014 675.734 987.643 1355.511 9630.592
Running 'test05-processor.R' [1s]
Comparing 'test05-processor.Rout' to 'test05-processor.Rout.save' ... OK
Running 'test06-pipeline.R' [1s]
Comparing 'test06-pipeline.Rout' to 'test06-pipeline.Rout.save' ... OK
Running 'test07-complete-channel.R' [1s]
Comparing 'test07-complete-channel.Rout' to 'test07-complete-channel.Rout.save' ...22,27c22,27
< Min. :6.560e-02 Min. :33.61 Min. : 0.0
< 1st Qu.:2.855e+02 1st Qu.:55.95 1st Qu.: 225.7
< Median :6.874e+02 Median :60.01 Median : 626.7
< Mean :1.003e+03 Mean :59.99 Mean : 944.6
< 3rd Qu.:1.396e+03 3rd Qu.:64.07 3rd Qu.: 1336.5
< Max. :1.178e+04 Max. :85.24 Max. :11718.9
---
> Min. : 0.066 Min. :33.61 Min. : 0.0
> 1st Qu.: 285.474 1st Qu.:55.95 1st Qu.: 225.7
> Median : 687.351 Median :60.01 Median : 626.7
> Mean : 1002.718 Mean :59.99 Mean : 944.6
> 3rd Qu.: 1395.736 3rd Qu.:64.07 3rd Qu.: 1336.5
> Max. :11776.787 Max. :85.24 Max. :11718.9
Flavor: r-devel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 1, OK: 12
Version: 2.0.3
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘edgeR’
Flavor: r-oldrel-macos-x86_64
Version: 2.0.3
Check: re-building of vignette outputs
Result: NOTE
Note: skipping ‘SIBER.Rnw’ due to unavailable dependencies: 'edgeR'
Flavor: r-oldrel-macos-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 3, OK: 10
Version: 1.1.4
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
Reaper-class.Rd: distanceMatrix, PCDimension
SimThresher-class.Rd: AuerGervini
Thresher-class.Rd: distanceMatrix, AuerGervini, PCDimension,
AuerGervini-class
matchLabels.Rd: distanceMatrix
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: NOTE: 3, OK: 10
Version: 0.1.2
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
02-util.Rd: xmlParseDoc, igraph
03-main.Rd: igraph, plot.igraph
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64