Last updated on 2025-02-11 07:48:45 CET.
| Package | FAIL | ERROR | NOTE | OK |
|---|---|---|---|---|
| distops | 1 | 12 | ||
| fdacluster | 11 | 2 | ||
| flipr | 6 | 7 | ||
| midi | 5 | 8 | ||
| nevada | 5 | 8 | ||
| nloptr | 4 | 9 | ||
| squat | 9 | 4 |
Current CRAN status: FAIL: 1, NOTE: 12
Version: 0.1.0
Check: DESCRIPTION meta-information
Result: NOTE
Missing dependency on R >= 4.1.0 because package code uses the pipe
|> or function shorthand \(...) syntax added in R 4.1.0.
File(s) using such syntax:
‘dev_package.R’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 0.1.0
Check: PDF version of manual
Result: FAIL
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:
> cleanEx()
> nameEx("use_distops")
> ### * use_distops
>
> flush(stderr()); flush(stdout())
>
> ### Name: use_distops
> ### Title: Setups package to use the *distops* package
> ### Aliases: use_distops
>
> ### ** Examples
>
>
>
>
> ### * <FOOTER>
> ###
> cleanEx()
> options(digits = 7L)
> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
Time elapsed: 0.43 0.05 0.47 NA NA
> grDevices::dev.off()
null device
1
> ###
> ### Local variables: ***
> ### mode: outline-minor ***
> ### outline-regexp: "\\(> \\)?### [*]+" ***
> ### End: ***
> quit('no')
======== End of example output (where/before crash/hang up occured ?) ========
Flavor: r-devel-windows-x86_64
Version: 0.1.0
Check: for GNU extensions in Makefiles
Result: NOTE
GNU make is a SystemRequirements.
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: NOTE: 11, OK: 2
Version: 0.4.1
Check: DESCRIPTION meta-information
Result: NOTE
Missing dependency on R >= 4.2.0 because package code uses the pipe
placeholder syntax added in R 4.2.0.
File(s) using such syntax:
‘caps-plot.R’ ‘utils.R’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 0.4.1
Check: installed package size
Result: NOTE
installed size is 14.9Mb
sub-directories of 1Mb or more:
R 1.9Mb
doc 1.5Mb
help 2.1Mb
libs 8.9Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: NOTE: 6, OK: 7
Version: 0.3.3
Check: installed package size
Result: NOTE
installed size is 10.6Mb
sub-directories of 1Mb or more:
doc 9.1Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: NOTE: 5, OK: 8
Version: 0.1.0
Check: DESCRIPTION meta-information
Result: NOTE
Missing dependency on R >= 4.1.0 because package code uses the pipe
|> or function shorthand \(...) syntax added in R 4.1.0.
File(s) using such syntax:
‘cylinder-bundle-compartment.R’ ‘cylinder-bundle-geometry.R’
‘samplers.R’ ‘utils.R’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Current CRAN status: NOTE: 5, OK: 8
Version: 0.2.0
Check: DESCRIPTION meta-information
Result: NOTE
Missing dependency on R >= 4.1.0 because package code uses the pipe
|> or function shorthand \(...) syntax added in R 4.1.0.
File(s) using such syntax:
‘visualizations.R’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Current CRAN status: NOTE: 4, OK: 9
Version: 2.1.1
Check: top-level files
Result: NOTE
possible bashism in configure.ac line 64 (should be 'b = a'):
if test x"${have_cmake}" == x"no"; then
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Current CRAN status: ERROR: 9, NOTE: 4
Version: 0.3.0
Check: DESCRIPTION meta-information
Result: NOTE
Missing dependency on R >= 4.2.0 because package code uses the pipe
placeholder syntax added in R 4.2.0.
File(s) using such syntax:
‘qts-prcomp.R’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 0.3.0
Check: examples
Result: ERROR
Running examples in ‘squat-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: autoplot.qtsclust
> ### Title: Plot for 'qtsclust' objects
> ### Aliases: autoplot.qtsclust
>
> ### ** Examples
>
> ## Don't show:
> if (requireNamespace("ggplot2", quietly = TRUE)) (if (getRversion() >= "3.4") withAutoprint else force)({ # examplesIf
+ ## End(Don't show)
+ out <- kmeans(vespa64$igp[1:10], n_clusters = 2)
+ ggplot2::autoplot(out)
+ ## Don't show:
+ }) # examplesIf
> out <- kmeans(vespa64$igp[1:10], n_clusters = 2)
Error in `check_option_compatibility()`:
! The L2 metric is neither dilation-invariant nor affine-invariant.
Backtrace:
▆
1. ├─(if (getRversion() >= "3.4") withAutoprint else force)(...)
2. │ └─base::source(...)
3. │ ├─base::withVisible(eval(ei, envir))
4. │ └─base::eval(ei, envir)
5. │ └─base::eval(ei, envir)
6. ├─squat::kmeans(vespa64$igp[1:10], n_clusters = 2)
7. └─squat:::kmeans.qts_sample(vespa64$igp[1:10], n_clusters = 2)
8. └─fdacluster::fdakmeans(...)
9. └─fdacluster:::check_option_compatibility(...)
10. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.")
11. └─rlang::abort(...)
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
autoplot.prcomp_qts 5.670 0.200 7.286
append 5.058 0.047 5.943
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.3.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [25s/31s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(squat)
Attaching package: 'squat'
The following objects are masked from 'package:stats':
dist, hclust, kmeans, smooth
The following objects are masked from 'package:base':
append, scale
>
> test_check("squat")
Attaching package: 'purrr'
The following object is masked from 'package:testthat':
is_null
i The maximum number of principal component is 15.
i The maximum number of principal component is 15.
The `original_space` boolean argument is not specified. Defaulting to TRUE.
The `plane` length-2 integer vector argument is not specified. Defaulting to 1:2.
i The maximum number of principal component is 15.
The `original_space` boolean argument is not specified. Defaulting to TRUE.
[ FAIL 6 | WARN 0 | SKIP 28 | PASS 27 ]
══ Skipped tests (28) ══════════════════════════════════════════════════════════
• On CRAN (28): 'test-DTW.R:2:3', 'test-interface.R:2:3',
'test-interface.R:7:3', 'test-interface.R:12:3', 'test-interface.R:24:3',
'test-interface.R:31:3', 'test-interface.R:36:3', 'test-interface.R:41:3',
'test-interface.R:46:3', 'test-qts-class.R:15:3', 'test-qts-class.R:23:3',
'test-qts-class.R:31:3', 'test-qts-class.R:49:3', 'test-qts-dist.R:5:3',
'test-qts-dist.R:15:3', 'test-qts-prcomp.R:3:3', 'test-qts-prcomp.R:21:3',
'test-qts-sample-class.R:7:3', 'test-qts-sample-class.R:18:5',
'test-qts-sample-class.R:30:3', 'test-qts-sample-class.R:67:3',
'test-qts-sample-class.R:71:3', 'test-qts-sample-class.R:75:3',
'test-qts-sample-class.R:91:3', 'test-qts-transformations.R:2:3',
'test-qts-transformations.R:6:3', 'test-qts-transformations.R:11:3',
'test-qts-transformations.R:16:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-qts-dbscan.R:8:3'): Function dbscan.qts_sample() works ─────────
Error in `check_option_compatibility(is_domain_interval = is_domain_interval,
transformation = transformation, warping_class = warping_class,
metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant.
Backtrace:
▆
1. ├─squat::dbscan(vespa64$igp[1:10]) at test-qts-dbscan.R:8:3
2. └─squat:::dbscan.qts_sample(vespa64$igp[1:10])
3. └─fdacluster::fdadbscan(...)
4. └─fdacluster:::check_option_compatibility(...)
5. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.")
6. └─rlang::abort(...)
── Error ('test-qts-dist.R:9:3'): Function dist.qts_sample() works via fdacluster pkg ──
Error in `fdacluster::fdadist(x = l$grid, y = l$values, warping_class = warping_class,
metric = metric, cluster_on_phase = cluster_on_phase, labels = labels)`: `warping_class` must be one of "none", "shift", "dilation", "affine", or "bpd", not "affine".
Backtrace:
▆
1. ├─squat::dist(vespa64$igp[1:5]) at test-qts-dist.R:9:3
2. └─squat:::dist.qts_sample(vespa64$igp[1:5])
3. └─fdacluster::fdadist(warping_class = warping_class)
4. └─rlang::arg_match(warping_class)
5. └─rlang::abort(msg, call = error_call, arg = error_arg)
── Error ('test-qts-hclust.R:7:3'): Function hclust.qts_sample() works ─────────
Error in `check_option_compatibility(is_domain_interval = is_domain_interval,
transformation = transformation, warping_class = warping_class,
metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant.
Backtrace:
▆
1. ├─squat::hclust(vespa64$igp[1:10], n_clusters = 2) at test-qts-hclust.R:7:3
2. └─squat:::hclust.qts_sample(vespa64$igp[1:10], n_clusters = 2)
3. └─fdacluster::fdahclust(...)
4. └─fdacluster:::check_option_compatibility(...)
5. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.")
6. └─rlang::abort(...)
── Error ('test-qts-kmeans.R:8:5'): Function kmeans.qts_sample() works ─────────
Error in `check_option_compatibility(is_domain_interval = is_domain_interval,
transformation = transformation, warping_class = warping_class,
metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant.
Backtrace:
▆
1. ├─withr::with_seed(...) at test-qts-kmeans.R:7:3
2. │ └─withr::with_preserve_seed(...)
3. ├─squat::kmeans(vespa64$igp[1:10], n_clusters = 2) at test-qts-kmeans.R:8:5
4. └─squat:::kmeans.qts_sample(vespa64$igp[1:10], n_clusters = 2)
5. └─fdacluster::fdakmeans(...)
6. └─fdacluster:::check_option_compatibility(...)
7. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.")
8. └─rlang::abort(...)
── Error ('test-qts-kmeans.R:15:5'): Visualization code for k-means work ───────
Error in `check_option_compatibility(is_domain_interval = is_domain_interval,
transformation = transformation, warping_class = warping_class,
metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant.
Backtrace:
▆
1. ├─withr::with_seed(...) at test-qts-kmeans.R:14:3
2. │ └─withr::with_preserve_seed(...)
3. ├─squat::kmeans(vespa64$igp[1:10], n_clusters = 2) at test-qts-kmeans.R:15:5
4. └─squat:::kmeans.qts_sample(vespa64$igp[1:10], n_clusters = 2)
5. └─fdacluster::fdakmeans(...)
6. └─fdacluster:::check_option_compatibility(...)
7. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.")
8. └─rlang::abort(...)
── Error ('test-qts-kmeans.R:26:5'): Visualization functions for PCA work ──────
Error in `check_option_compatibility(is_domain_interval = is_domain_interval,
transformation = transformation, warping_class = warping_class,
metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant.
Backtrace:
▆
1. ├─withr::with_seed(...) at test-qts-kmeans.R:25:3
2. │ └─withr::with_preserve_seed(...)
3. ├─squat::kmeans(vespa64$igp[1:10], n_clusters = 2) at test-qts-kmeans.R:26:5
4. └─squat:::kmeans.qts_sample(vespa64$igp[1:10], n_clusters = 2)
5. └─fdacluster::fdakmeans(...)
6. └─fdacluster:::check_option_compatibility(...)
7. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.")
8. └─rlang::abort(...)
[ FAIL 6 | WARN 0 | SKIP 28 | PASS 27 ]
Deleting unused snapshots:
• qts-class/qts-plot-with-change-points.svg
• qts-kmeans/k-means-plot.svg
• qts-prcomp/colored-score-plot.svg
• qts-prcomp/score-plot.svg
• qts-prcomp/screeplot.svg
• qts-sample-class/qts-sample-plot-with-highlighted-observations.svg
• qts-sample-class/qts-sample-plot-with-memberships.svg
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.3.0
Check: examples
Result: ERROR
Running examples in ‘squat-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: autoplot.qtsclust
> ### Title: Plot for 'qtsclust' objects
> ### Aliases: autoplot.qtsclust
>
> ### ** Examples
>
> ## Don't show:
> if (requireNamespace("ggplot2", quietly = TRUE)) (if (getRversion() >= "3.4") withAutoprint else force)({ # examplesIf
+ ## End(Don't show)
+ out <- kmeans(vespa64$igp[1:10], n_clusters = 2)
+ ggplot2::autoplot(out)
+ ## Don't show:
+ }) # examplesIf
> out <- kmeans(vespa64$igp[1:10], n_clusters = 2)
Error in `check_option_compatibility()`:
! The L2 metric is neither dilation-invariant nor affine-invariant.
Backtrace:
▆
1. ├─(if (getRversion() >= "3.4") withAutoprint else force)(...)
2. │ └─base::source(...)
3. │ ├─base::withVisible(eval(ei, envir))
4. │ └─base::eval(ei, envir)
5. │ └─base::eval(ei, envir)
6. ├─squat::kmeans(vespa64$igp[1:10], n_clusters = 2)
7. └─squat:::kmeans.qts_sample(vespa64$igp[1:10], n_clusters = 2)
8. └─fdacluster::fdakmeans(...)
9. └─fdacluster:::check_option_compatibility(...)
10. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.")
11. └─rlang::abort(...)
Execution halted
Flavors: r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.3.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [16s/23s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(squat)
Attaching package: 'squat'
The following objects are masked from 'package:stats':
dist, hclust, kmeans, smooth
The following objects are masked from 'package:base':
append, scale
>
> test_check("squat")
Attaching package: 'purrr'
The following object is masked from 'package:testthat':
is_null
i The maximum number of principal component is 15.
i The maximum number of principal component is 15.
The `original_space` boolean argument is not specified. Defaulting to TRUE.
The `plane` length-2 integer vector argument is not specified. Defaulting to 1:2.
i The maximum number of principal component is 15.
The `original_space` boolean argument is not specified. Defaulting to TRUE.
[ FAIL 6 | WARN 0 | SKIP 28 | PASS 27 ]
══ Skipped tests (28) ══════════════════════════════════════════════════════════
• On CRAN (28): 'test-DTW.R:2:3', 'test-interface.R:2:3',
'test-interface.R:7:3', 'test-interface.R:12:3', 'test-interface.R:24:3',
'test-interface.R:31:3', 'test-interface.R:36:3', 'test-interface.R:41:3',
'test-interface.R:46:3', 'test-qts-class.R:15:3', 'test-qts-class.R:23:3',
'test-qts-class.R:31:3', 'test-qts-class.R:49:3', 'test-qts-dist.R:5:3',
'test-qts-dist.R:15:3', 'test-qts-prcomp.R:3:3', 'test-qts-prcomp.R:21:3',
'test-qts-sample-class.R:7:3', 'test-qts-sample-class.R:18:5',
'test-qts-sample-class.R:30:3', 'test-qts-sample-class.R:67:3',
'test-qts-sample-class.R:71:3', 'test-qts-sample-class.R:75:3',
'test-qts-sample-class.R:91:3', 'test-qts-transformations.R:2:3',
'test-qts-transformations.R:6:3', 'test-qts-transformations.R:11:3',
'test-qts-transformations.R:16:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-qts-dbscan.R:8:3'): Function dbscan.qts_sample() works ─────────
Error in `check_option_compatibility(is_domain_interval = is_domain_interval,
transformation = transformation, warping_class = warping_class,
metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant.
Backtrace:
▆
1. ├─squat::dbscan(vespa64$igp[1:10]) at test-qts-dbscan.R:8:3
2. └─squat:::dbscan.qts_sample(vespa64$igp[1:10])
3. └─fdacluster::fdadbscan(...)
4. └─fdacluster:::check_option_compatibility(...)
5. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.")
6. └─rlang::abort(...)
── Error ('test-qts-dist.R:9:3'): Function dist.qts_sample() works via fdacluster pkg ──
Error in `fdacluster::fdadist(x = l$grid, y = l$values, warping_class = warping_class,
metric = metric, cluster_on_phase = cluster_on_phase, labels = labels)`: `warping_class` must be one of "none", "shift", "dilation", "affine", or "bpd", not "affine".
Backtrace:
▆
1. ├─squat::dist(vespa64$igp[1:5]) at test-qts-dist.R:9:3
2. └─squat:::dist.qts_sample(vespa64$igp[1:5])
3. └─fdacluster::fdadist(warping_class = warping_class)
4. └─rlang::arg_match(warping_class)
5. └─rlang::abort(msg, call = error_call, arg = error_arg)
── Error ('test-qts-hclust.R:7:3'): Function hclust.qts_sample() works ─────────
Error in `check_option_compatibility(is_domain_interval = is_domain_interval,
transformation = transformation, warping_class = warping_class,
metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant.
Backtrace:
▆
1. ├─squat::hclust(vespa64$igp[1:10], n_clusters = 2) at test-qts-hclust.R:7:3
2. └─squat:::hclust.qts_sample(vespa64$igp[1:10], n_clusters = 2)
3. └─fdacluster::fdahclust(...)
4. └─fdacluster:::check_option_compatibility(...)
5. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.")
6. └─rlang::abort(...)
── Error ('test-qts-kmeans.R:8:5'): Function kmeans.qts_sample() works ─────────
Error in `check_option_compatibility(is_domain_interval = is_domain_interval,
transformation = transformation, warping_class = warping_class,
metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant.
Backtrace:
▆
1. ├─withr::with_seed(...) at test-qts-kmeans.R:7:3
2. │ └─withr::with_preserve_seed(...)
3. ├─squat::kmeans(vespa64$igp[1:10], n_clusters = 2) at test-qts-kmeans.R:8:5
4. └─squat:::kmeans.qts_sample(vespa64$igp[1:10], n_clusters = 2)
5. └─fdacluster::fdakmeans(...)
6. └─fdacluster:::check_option_compatibility(...)
7. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.")
8. └─rlang::abort(...)
── Error ('test-qts-kmeans.R:15:5'): Visualization code for k-means work ───────
Error in `check_option_compatibility(is_domain_interval = is_domain_interval,
transformation = transformation, warping_class = warping_class,
metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant.
Backtrace:
▆
1. ├─withr::with_seed(...) at test-qts-kmeans.R:14:3
2. │ └─withr::with_preserve_seed(...)
3. ├─squat::kmeans(vespa64$igp[1:10], n_clusters = 2) at test-qts-kmeans.R:15:5
4. └─squat:::kmeans.qts_sample(vespa64$igp[1:10], n_clusters = 2)
5. └─fdacluster::fdakmeans(...)
6. └─fdacluster:::check_option_compatibility(...)
7. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.")
8. └─rlang::abort(...)
── Error ('test-qts-kmeans.R:26:5'): Visualization functions for PCA work ──────
Error in `check_option_compatibility(is_domain_interval = is_domain_interval,
transformation = transformation, warping_class = warping_class,
metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant.
Backtrace:
▆
1. ├─withr::with_seed(...) at test-qts-kmeans.R:25:3
2. │ └─withr::with_preserve_seed(...)
3. ├─squat::kmeans(vespa64$igp[1:10], n_clusters = 2) at test-qts-kmeans.R:26:5
4. └─squat:::kmeans.qts_sample(vespa64$igp[1:10], n_clusters = 2)
5. └─fdacluster::fdakmeans(...)
6. └─fdacluster:::check_option_compatibility(...)
7. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.")
8. └─rlang::abort(...)
[ FAIL 6 | WARN 0 | SKIP 28 | PASS 27 ]
Deleting unused snapshots:
• qts-class/qts-plot-with-change-points.svg
• qts-kmeans/k-means-plot.svg
• qts-prcomp/colored-score-plot.svg
• qts-prcomp/score-plot.svg
• qts-prcomp/screeplot.svg
• qts-sample-class/qts-sample-plot-with-highlighted-observations.svg
• qts-sample-class/qts-sample-plot-with-memberships.svg
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.3.0
Check: examples
Result: ERROR
Running examples in ‘squat-Ex.R’ failed
The error most likely occurred in:
> ### Name: autoplot.qtsclust
> ### Title: Plot for 'qtsclust' objects
> ### Aliases: autoplot.qtsclust
>
> ### ** Examples
>
> ## Don't show:
> if (requireNamespace("ggplot2", quietly = TRUE)) (if (getRversion() >= "3.4") withAutoprint else force)({ # examplesIf
+ ## End(Don't show)
+ out <- kmeans(vespa64$igp[1:10], n_clusters = 2)
+ ggplot2::autoplot(out)
+ ## Don't show:
+ }) # examplesIf
> out <- kmeans(vespa64$igp[1:10], n_clusters = 2)
Error in `check_option_compatibility()`:
! The L2 metric is neither dilation-invariant nor affine-invariant.
Backtrace:
▆
1. ├─(if (getRversion() >= "3.4") withAutoprint else force)(...)
2. │ └─base::source(...)
3. │ ├─base::withVisible(eval(ei, envir))
4. │ └─base::eval(ei, envir)
5. │ └─base::eval(ei, envir)
6. ├─squat::kmeans(vespa64$igp[1:10], n_clusters = 2)
7. └─squat:::kmeans.qts_sample(vespa64$igp[1:10], n_clusters = 2)
8. └─fdacluster::fdakmeans(...)
9. └─fdacluster:::check_option_compatibility(...)
10. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.")
11. └─rlang::abort(...)
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 0.3.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [41s/89s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(squat)
Attaching package: 'squat'
The following objects are masked from 'package:stats':
dist, hclust, kmeans, smooth
The following objects are masked from 'package:base':
append, scale
>
> test_check("squat")
Attaching package: 'purrr'
The following object is masked from 'package:testthat':
is_null
i The maximum number of principal component is 15.
i The maximum number of principal component is 15.
The `original_space` boolean argument is not specified. Defaulting to TRUE.
The `plane` length-2 integer vector argument is not specified. Defaulting to 1:2.
i The maximum number of principal component is 15.
The `original_space` boolean argument is not specified. Defaulting to TRUE.
[ FAIL 6 | WARN 0 | SKIP 28 | PASS 27 ]
══ Skipped tests (28) ══════════════════════════════════════════════════════════
• On CRAN (28): 'test-DTW.R:2:3', 'test-interface.R:2:3',
'test-interface.R:7:3', 'test-interface.R:12:3', 'test-interface.R:24:3',
'test-interface.R:31:3', 'test-interface.R:36:3', 'test-interface.R:41:3',
'test-interface.R:46:3', 'test-qts-class.R:15:3', 'test-qts-class.R:23:3',
'test-qts-class.R:31:3', 'test-qts-class.R:49:3', 'test-qts-dist.R:5:3',
'test-qts-dist.R:15:3', 'test-qts-prcomp.R:3:3', 'test-qts-prcomp.R:21:3',
'test-qts-sample-class.R:7:3', 'test-qts-sample-class.R:18:5',
'test-qts-sample-class.R:30:3', 'test-qts-sample-class.R:67:3',
'test-qts-sample-class.R:71:3', 'test-qts-sample-class.R:75:3',
'test-qts-sample-class.R:91:3', 'test-qts-transformations.R:2:3',
'test-qts-transformations.R:6:3', 'test-qts-transformations.R:11:3',
'test-qts-transformations.R:16:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-qts-dbscan.R:8:3'): Function dbscan.qts_sample() works ─────────
Error in `check_option_compatibility(is_domain_interval = is_domain_interval,
transformation = transformation, warping_class = warping_class,
metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant.
Backtrace:
▆
1. ├─squat::dbscan(vespa64$igp[1:10]) at test-qts-dbscan.R:8:3
2. └─squat:::dbscan.qts_sample(vespa64$igp[1:10])
3. └─fdacluster::fdadbscan(...)
4. └─fdacluster:::check_option_compatibility(...)
5. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.")
6. └─rlang::abort(...)
── Error ('test-qts-dist.R:9:3'): Function dist.qts_sample() works via fdacluster pkg ──
Error in `fdacluster::fdadist(x = l$grid, y = l$values, warping_class = warping_class,
metric = metric, cluster_on_phase = cluster_on_phase, labels = labels)`: `warping_class` must be one of "none", "shift", "dilation", "affine", or "bpd", not "affine".
Backtrace:
▆
1. ├─squat::dist(vespa64$igp[1:5]) at test-qts-dist.R:9:3
2. └─squat:::dist.qts_sample(vespa64$igp[1:5])
3. └─fdacluster::fdadist(warping_class = warping_class)
4. └─rlang::arg_match(warping_class)
5. └─rlang::abort(msg, call = error_call, arg = error_arg)
── Error ('test-qts-hclust.R:7:3'): Function hclust.qts_sample() works ─────────
Error in `check_option_compatibility(is_domain_interval = is_domain_interval,
transformation = transformation, warping_class = warping_class,
metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant.
Backtrace:
▆
1. ├─squat::hclust(vespa64$igp[1:10], n_clusters = 2) at test-qts-hclust.R:7:3
2. └─squat:::hclust.qts_sample(vespa64$igp[1:10], n_clusters = 2)
3. └─fdacluster::fdahclust(...)
4. └─fdacluster:::check_option_compatibility(...)
5. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.")
6. └─rlang::abort(...)
── Error ('test-qts-kmeans.R:8:5'): Function kmeans.qts_sample() works ─────────
Error in `check_option_compatibility(is_domain_interval = is_domain_interval,
transformation = transformation, warping_class = warping_class,
metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant.
Backtrace:
▆
1. ├─withr::with_seed(...) at test-qts-kmeans.R:7:3
2. │ └─withr::with_preserve_seed(...)
3. ├─squat::kmeans(vespa64$igp[1:10], n_clusters = 2) at test-qts-kmeans.R:8:5
4. └─squat:::kmeans.qts_sample(vespa64$igp[1:10], n_clusters = 2)
5. └─fdacluster::fdakmeans(...)
6. └─fdacluster:::check_option_compatibility(...)
7. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.")
8. └─rlang::abort(...)
── Error ('test-qts-kmeans.R:15:5'): Visualization code for k-means work ───────
Error in `check_option_compatibility(is_domain_interval = is_domain_interval,
transformation = transformation, warping_class = warping_class,
metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant.
Backtrace:
▆
1. ├─withr::with_seed(...) at test-qts-kmeans.R:14:3
2. │ └─withr::with_preserve_seed(...)
3. ├─squat::kmeans(vespa64$igp[1:10], n_clusters = 2) at test-qts-kmeans.R:15:5
4. └─squat:::kmeans.qts_sample(vespa64$igp[1:10], n_clusters = 2)
5. └─fdacluster::fdakmeans(...)
6. └─fdacluster:::check_option_compatibility(...)
7. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.")
8. └─rlang::abort(...)
── Error ('test-qts-kmeans.R:26:5'): Visualization functions for PCA work ──────
Error in `check_option_compatibility(is_domain_interval = is_domain_interval,
transformation = transformation, warping_class = warping_class,
metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant.
Backtrace:
▆
1. ├─withr::with_seed(...) at test-qts-kmeans.R:25:3
2. │ └─withr::with_preserve_seed(...)
3. ├─squat::kmeans(vespa64$igp[1:10], n_clusters = 2) at test-qts-kmeans.R:26:5
4. └─squat:::kmeans.qts_sample(vespa64$igp[1:10], n_clusters = 2)
5. └─fdacluster::fdakmeans(...)
6. └─fdacluster:::check_option_compatibility(...)
7. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.")
8. └─rlang::abort(...)
[ FAIL 6 | WARN 0 | SKIP 28 | PASS 27 ]
Deleting unused snapshots:
• qts-class/qts-plot-with-change-points.svg
• qts-kmeans/k-means-plot.svg
• qts-prcomp/colored-score-plot.svg
• qts-prcomp/score-plot.svg
• qts-prcomp/screeplot.svg
• qts-sample-class/qts-sample-plot-with-highlighted-observations.svg
• qts-sample-class/qts-sample-plot-with-memberships.svg
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.3.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [38s/48s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(squat)
Attaching package: 'squat'
The following objects are masked from 'package:stats':
dist, hclust, kmeans, smooth
The following objects are masked from 'package:base':
append, scale
>
> test_check("squat")
Attaching package: 'purrr'
The following object is masked from 'package:testthat':
is_null
i The maximum number of principal component is 15.
i The maximum number of principal component is 15.
The `original_space` boolean argument is not specified. Defaulting to TRUE.
The `plane` length-2 integer vector argument is not specified. Defaulting to 1:2.
i The maximum number of principal component is 15.
The `original_space` boolean argument is not specified. Defaulting to TRUE.
[ FAIL 6 | WARN 0 | SKIP 28 | PASS 27 ]
══ Skipped tests (28) ══════════════════════════════════════════════════════════
• On CRAN (28): 'test-DTW.R:2:3', 'test-interface.R:2:3',
'test-interface.R:7:3', 'test-interface.R:12:3', 'test-interface.R:24:3',
'test-interface.R:31:3', 'test-interface.R:36:3', 'test-interface.R:41:3',
'test-interface.R:46:3', 'test-qts-class.R:15:3', 'test-qts-class.R:23:3',
'test-qts-class.R:31:3', 'test-qts-class.R:49:3', 'test-qts-dist.R:5:3',
'test-qts-dist.R:15:3', 'test-qts-prcomp.R:3:3', 'test-qts-prcomp.R:21:3',
'test-qts-sample-class.R:7:3', 'test-qts-sample-class.R:18:5',
'test-qts-sample-class.R:30:3', 'test-qts-sample-class.R:67:3',
'test-qts-sample-class.R:71:3', 'test-qts-sample-class.R:75:3',
'test-qts-sample-class.R:91:3', 'test-qts-transformations.R:2:3',
'test-qts-transformations.R:6:3', 'test-qts-transformations.R:11:3',
'test-qts-transformations.R:16:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-qts-dbscan.R:8:3'): Function dbscan.qts_sample() works ─────────
Error in `check_option_compatibility(is_domain_interval = is_domain_interval,
transformation = transformation, warping_class = warping_class,
metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant.
Backtrace:
▆
1. ├─squat::dbscan(vespa64$igp[1:10]) at test-qts-dbscan.R:8:3
2. └─squat:::dbscan.qts_sample(vespa64$igp[1:10])
3. └─fdacluster::fdadbscan(...)
4. └─fdacluster:::check_option_compatibility(...)
5. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.")
6. └─rlang::abort(...)
── Error ('test-qts-dist.R:9:3'): Function dist.qts_sample() works via fdacluster pkg ──
Error in `fdacluster::fdadist(x = l$grid, y = l$values, warping_class = warping_class,
metric = metric, cluster_on_phase = cluster_on_phase, labels = labels)`: `warping_class` must be one of "none", "shift", "dilation", "affine", or "bpd", not "affine".
Backtrace:
▆
1. ├─squat::dist(vespa64$igp[1:5]) at test-qts-dist.R:9:3
2. └─squat:::dist.qts_sample(vespa64$igp[1:5])
3. └─fdacluster::fdadist(warping_class = warping_class)
4. └─rlang::arg_match(warping_class)
5. └─rlang::abort(msg, call = error_call, arg = error_arg)
── Error ('test-qts-hclust.R:7:3'): Function hclust.qts_sample() works ─────────
Error in `check_option_compatibility(is_domain_interval = is_domain_interval,
transformation = transformation, warping_class = warping_class,
metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant.
Backtrace:
▆
1. ├─squat::hclust(vespa64$igp[1:10], n_clusters = 2) at test-qts-hclust.R:7:3
2. └─squat:::hclust.qts_sample(vespa64$igp[1:10], n_clusters = 2)
3. └─fdacluster::fdahclust(...)
4. └─fdacluster:::check_option_compatibility(...)
5. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.")
6. └─rlang::abort(...)
── Error ('test-qts-kmeans.R:8:5'): Function kmeans.qts_sample() works ─────────
Error in `check_option_compatibility(is_domain_interval = is_domain_interval,
transformation = transformation, warping_class = warping_class,
metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant.
Backtrace:
▆
1. ├─withr::with_seed(...) at test-qts-kmeans.R:7:3
2. │ └─withr::with_preserve_seed(...)
3. ├─squat::kmeans(vespa64$igp[1:10], n_clusters = 2) at test-qts-kmeans.R:8:5
4. └─squat:::kmeans.qts_sample(vespa64$igp[1:10], n_clusters = 2)
5. └─fdacluster::fdakmeans(...)
6. └─fdacluster:::check_option_compatibility(...)
7. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.")
8. └─rlang::abort(...)
── Error ('test-qts-kmeans.R:15:5'): Visualization code for k-means work ───────
Error in `check_option_compatibility(is_domain_interval = is_domain_interval,
transformation = transformation, warping_class = warping_class,
metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant.
Backtrace:
▆
1. ├─withr::with_seed(...) at test-qts-kmeans.R:14:3
2. │ └─withr::with_preserve_seed(...)
3. ├─squat::kmeans(vespa64$igp[1:10], n_clusters = 2) at test-qts-kmeans.R:15:5
4. └─squat:::kmeans.qts_sample(vespa64$igp[1:10], n_clusters = 2)
5. └─fdacluster::fdakmeans(...)
6. └─fdacluster:::check_option_compatibility(...)
7. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.")
8. └─rlang::abort(...)
── Error ('test-qts-kmeans.R:26:5'): Visualization functions for PCA work ──────
Error in `check_option_compatibility(is_domain_interval = is_domain_interval,
transformation = transformation, warping_class = warping_class,
metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant.
Backtrace:
▆
1. ├─withr::with_seed(...) at test-qts-kmeans.R:25:3
2. │ └─withr::with_preserve_seed(...)
3. ├─squat::kmeans(vespa64$igp[1:10], n_clusters = 2) at test-qts-kmeans.R:26:5
4. └─squat:::kmeans.qts_sample(vespa64$igp[1:10], n_clusters = 2)
5. └─fdacluster::fdakmeans(...)
6. └─fdacluster:::check_option_compatibility(...)
7. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.")
8. └─rlang::abort(...)
[ FAIL 6 | WARN 0 | SKIP 28 | PASS 27 ]
Deleting unused snapshots:
• qts-class/qts-plot-with-change-points.svg
• qts-kmeans/k-means-plot.svg
• qts-prcomp/colored-score-plot.svg
• qts-prcomp/score-plot.svg
• qts-prcomp/screeplot.svg
• qts-sample-class/qts-sample-plot-with-highlighted-observations.svg
• qts-sample-class/qts-sample-plot-with-memberships.svg
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.3.0
Check: tests
Result: ERROR
Running 'testthat.R' [20s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(squat)
Attaching package: 'squat'
The following objects are masked from 'package:stats':
dist, hclust, kmeans, smooth
The following objects are masked from 'package:base':
append, scale
>
> test_check("squat")
Attaching package: 'purrr'
The following object is masked from 'package:testthat':
is_null
i The maximum number of principal component is 15.
i The maximum number of principal component is 15.
The `original_space` boolean argument is not specified. Defaulting to TRUE.
The `plane` length-2 integer vector argument is not specified. Defaulting to 1:2.
i The maximum number of principal component is 15.
The `original_space` boolean argument is not specified. Defaulting to TRUE.
[ FAIL 6 | WARN 0 | SKIP 28 | PASS 27 ]
══ Skipped tests (28) ══════════════════════════════════════════════════════════
• On CRAN (28): 'test-DTW.R:2:3', 'test-interface.R:2:3',
'test-interface.R:7:3', 'test-interface.R:12:3', 'test-interface.R:24:3',
'test-interface.R:31:3', 'test-interface.R:36:3', 'test-interface.R:41:3',
'test-interface.R:46:3', 'test-qts-class.R:15:3', 'test-qts-class.R:23:3',
'test-qts-class.R:31:3', 'test-qts-class.R:49:3', 'test-qts-dist.R:5:3',
'test-qts-dist.R:15:3', 'test-qts-prcomp.R:3:3', 'test-qts-prcomp.R:21:3',
'test-qts-sample-class.R:7:3', 'test-qts-sample-class.R:18:5',
'test-qts-sample-class.R:30:3', 'test-qts-sample-class.R:67:3',
'test-qts-sample-class.R:71:3', 'test-qts-sample-class.R:75:3',
'test-qts-sample-class.R:91:3', 'test-qts-transformations.R:2:3',
'test-qts-transformations.R:6:3', 'test-qts-transformations.R:11:3',
'test-qts-transformations.R:16:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-qts-dbscan.R:8:3'): Function dbscan.qts_sample() works ─────────
Error in `check_option_compatibility(is_domain_interval = is_domain_interval,
transformation = transformation, warping_class = warping_class,
metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant.
Backtrace:
▆
1. ├─squat::dbscan(vespa64$igp[1:10]) at test-qts-dbscan.R:8:3
2. └─squat:::dbscan.qts_sample(vespa64$igp[1:10])
3. └─fdacluster::fdadbscan(...)
4. └─fdacluster:::check_option_compatibility(...)
5. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.")
6. └─rlang::abort(...)
── Error ('test-qts-dist.R:9:3'): Function dist.qts_sample() works via fdacluster pkg ──
Error in `fdacluster::fdadist(x = l$grid, y = l$values, warping_class = warping_class,
metric = metric, cluster_on_phase = cluster_on_phase, labels = labels)`: `warping_class` must be one of "none", "shift", "dilation", "affine", or "bpd", not "affine".
Backtrace:
▆
1. ├─squat::dist(vespa64$igp[1:5]) at test-qts-dist.R:9:3
2. └─squat:::dist.qts_sample(vespa64$igp[1:5])
3. └─fdacluster::fdadist(warping_class = warping_class)
4. └─rlang::arg_match(warping_class)
5. └─rlang::abort(msg, call = error_call, arg = error_arg)
── Error ('test-qts-hclust.R:7:3'): Function hclust.qts_sample() works ─────────
Error in `check_option_compatibility(is_domain_interval = is_domain_interval,
transformation = transformation, warping_class = warping_class,
metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant.
Backtrace:
▆
1. ├─squat::hclust(vespa64$igp[1:10], n_clusters = 2) at test-qts-hclust.R:7:3
2. └─squat:::hclust.qts_sample(vespa64$igp[1:10], n_clusters = 2)
3. └─fdacluster::fdahclust(...)
4. └─fdacluster:::check_option_compatibility(...)
5. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.")
6. └─rlang::abort(...)
── Error ('test-qts-kmeans.R:8:5'): Function kmeans.qts_sample() works ─────────
Error in `check_option_compatibility(is_domain_interval = is_domain_interval,
transformation = transformation, warping_class = warping_class,
metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant.
Backtrace:
▆
1. ├─withr::with_seed(...) at test-qts-kmeans.R:7:3
2. │ └─withr::with_preserve_seed(...)
3. ├─squat::kmeans(vespa64$igp[1:10], n_clusters = 2) at test-qts-kmeans.R:8:5
4. └─squat:::kmeans.qts_sample(vespa64$igp[1:10], n_clusters = 2)
5. └─fdacluster::fdakmeans(...)
6. └─fdacluster:::check_option_compatibility(...)
7. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.")
8. └─rlang::abort(...)
── Error ('test-qts-kmeans.R:15:5'): Visualization code for k-means work ───────
Error in `check_option_compatibility(is_domain_interval = is_domain_interval,
transformation = transformation, warping_class = warping_class,
metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant.
Backtrace:
▆
1. ├─withr::with_seed(...) at test-qts-kmeans.R:14:3
2. │ └─withr::with_preserve_seed(...)
3. ├─squat::kmeans(vespa64$igp[1:10], n_clusters = 2) at test-qts-kmeans.R:15:5
4. └─squat:::kmeans.qts_sample(vespa64$igp[1:10], n_clusters = 2)
5. └─fdacluster::fdakmeans(...)
6. └─fdacluster:::check_option_compatibility(...)
7. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.")
8. └─rlang::abort(...)
── Error ('test-qts-kmeans.R:26:5'): Visualization functions for PCA work ──────
Error in `check_option_compatibility(is_domain_interval = is_domain_interval,
transformation = transformation, warping_class = warping_class,
metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant.
Backtrace:
▆
1. ├─withr::with_seed(...) at test-qts-kmeans.R:25:3
2. │ └─withr::with_preserve_seed(...)
3. ├─squat::kmeans(vespa64$igp[1:10], n_clusters = 2) at test-qts-kmeans.R:26:5
4. └─squat:::kmeans.qts_sample(vespa64$igp[1:10], n_clusters = 2)
5. └─fdacluster::fdakmeans(...)
6. └─fdacluster:::check_option_compatibility(...)
7. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.")
8. └─rlang::abort(...)
[ FAIL 6 | WARN 0 | SKIP 28 | PASS 27 ]
Deleting unused snapshots:
• qts-class/qts-plot-with-change-points.svg
• qts-kmeans/k-means-plot.svg
• qts-prcomp/colored-score-plot.svg
• qts-prcomp/score-plot.svg
• qts-prcomp/screeplot.svg
• qts-sample-class/qts-sample-plot-with-highlighted-observations.svg
• qts-sample-class/qts-sample-plot-with-memberships.svg
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64
Version: 0.3.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [22s/25s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(squat)
Attaching package: 'squat'
The following objects are masked from 'package:stats':
dist, hclust, kmeans, smooth
The following objects are masked from 'package:base':
append, scale
>
> test_check("squat")
Attaching package: 'purrr'
The following object is masked from 'package:testthat':
is_null
i The maximum number of principal component is 15.
i The maximum number of principal component is 15.
The `original_space` boolean argument is not specified. Defaulting to TRUE.
The `plane` length-2 integer vector argument is not specified. Defaulting to 1:2.
i The maximum number of principal component is 15.
The `original_space` boolean argument is not specified. Defaulting to TRUE.
[ FAIL 6 | WARN 0 | SKIP 28 | PASS 27 ]
══ Skipped tests (28) ══════════════════════════════════════════════════════════
• On CRAN (28): 'test-DTW.R:2:3', 'test-interface.R:2:3',
'test-interface.R:7:3', 'test-interface.R:12:3', 'test-interface.R:24:3',
'test-interface.R:31:3', 'test-interface.R:36:3', 'test-interface.R:41:3',
'test-interface.R:46:3', 'test-qts-class.R:15:3', 'test-qts-class.R:23:3',
'test-qts-class.R:31:3', 'test-qts-class.R:49:3', 'test-qts-dist.R:5:3',
'test-qts-dist.R:15:3', 'test-qts-prcomp.R:3:3', 'test-qts-prcomp.R:21:3',
'test-qts-sample-class.R:7:3', 'test-qts-sample-class.R:18:5',
'test-qts-sample-class.R:30:3', 'test-qts-sample-class.R:67:3',
'test-qts-sample-class.R:71:3', 'test-qts-sample-class.R:75:3',
'test-qts-sample-class.R:91:3', 'test-qts-transformations.R:2:3',
'test-qts-transformations.R:6:3', 'test-qts-transformations.R:11:3',
'test-qts-transformations.R:16:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-qts-dbscan.R:8:3'): Function dbscan.qts_sample() works ─────────
Error in `check_option_compatibility(is_domain_interval = is_domain_interval,
transformation = transformation, warping_class = warping_class,
metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant.
Backtrace:
▆
1. ├─squat::dbscan(vespa64$igp[1:10]) at test-qts-dbscan.R:8:3
2. └─squat:::dbscan.qts_sample(vespa64$igp[1:10])
3. └─fdacluster::fdadbscan(...)
4. └─fdacluster:::check_option_compatibility(...)
5. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.")
6. └─rlang::abort(...)
── Error ('test-qts-dist.R:9:3'): Function dist.qts_sample() works via fdacluster pkg ──
Error in `fdacluster::fdadist(x = l$grid, y = l$values, warping_class = warping_class,
metric = metric, cluster_on_phase = cluster_on_phase, labels = labels)`: `warping_class` must be one of "none", "shift", "dilation", "affine", or "bpd", not "affine".
Backtrace:
▆
1. ├─squat::dist(vespa64$igp[1:5]) at test-qts-dist.R:9:3
2. └─squat:::dist.qts_sample(vespa64$igp[1:5])
3. └─fdacluster::fdadist(warping_class = warping_class)
4. └─rlang::arg_match(warping_class)
5. └─rlang::abort(msg, call = error_call, arg = error_arg)
── Error ('test-qts-hclust.R:7:3'): Function hclust.qts_sample() works ─────────
Error in `check_option_compatibility(is_domain_interval = is_domain_interval,
transformation = transformation, warping_class = warping_class,
metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant.
Backtrace:
▆
1. ├─squat::hclust(vespa64$igp[1:10], n_clusters = 2) at test-qts-hclust.R:7:3
2. └─squat:::hclust.qts_sample(vespa64$igp[1:10], n_clusters = 2)
3. └─fdacluster::fdahclust(...)
4. └─fdacluster:::check_option_compatibility(...)
5. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.")
6. └─rlang::abort(...)
── Error ('test-qts-kmeans.R:8:5'): Function kmeans.qts_sample() works ─────────
Error in `check_option_compatibility(is_domain_interval = is_domain_interval,
transformation = transformation, warping_class = warping_class,
metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant.
Backtrace:
▆
1. ├─withr::with_seed(...) at test-qts-kmeans.R:7:3
2. │ └─withr::with_preserve_seed(...)
3. ├─squat::kmeans(vespa64$igp[1:10], n_clusters = 2) at test-qts-kmeans.R:8:5
4. └─squat:::kmeans.qts_sample(vespa64$igp[1:10], n_clusters = 2)
5. └─fdacluster::fdakmeans(...)
6. └─fdacluster:::check_option_compatibility(...)
7. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.")
8. └─rlang::abort(...)
── Error ('test-qts-kmeans.R:15:5'): Visualization code for k-means work ───────
Error in `check_option_compatibility(is_domain_interval = is_domain_interval,
transformation = transformation, warping_class = warping_class,
metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant.
Backtrace:
▆
1. ├─withr::with_seed(...) at test-qts-kmeans.R:14:3
2. │ └─withr::with_preserve_seed(...)
3. ├─squat::kmeans(vespa64$igp[1:10], n_clusters = 2) at test-qts-kmeans.R:15:5
4. └─squat:::kmeans.qts_sample(vespa64$igp[1:10], n_clusters = 2)
5. └─fdacluster::fdakmeans(...)
6. └─fdacluster:::check_option_compatibility(...)
7. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.")
8. └─rlang::abort(...)
── Error ('test-qts-kmeans.R:26:5'): Visualization functions for PCA work ──────
Error in `check_option_compatibility(is_domain_interval = is_domain_interval,
transformation = transformation, warping_class = warping_class,
metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant.
Backtrace:
▆
1. ├─withr::with_seed(...) at test-qts-kmeans.R:25:3
2. │ └─withr::with_preserve_seed(...)
3. ├─squat::kmeans(vespa64$igp[1:10], n_clusters = 2) at test-qts-kmeans.R:26:5
4. └─squat:::kmeans.qts_sample(vespa64$igp[1:10], n_clusters = 2)
5. └─fdacluster::fdakmeans(...)
6. └─fdacluster:::check_option_compatibility(...)
7. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.")
8. └─rlang::abort(...)
[ FAIL 6 | WARN 0 | SKIP 28 | PASS 27 ]
Deleting unused snapshots:
• qts-class/qts-plot-with-change-points.svg
• qts-kmeans/k-means-plot.svg
• qts-prcomp/colored-score-plot.svg
• qts-prcomp/score-plot.svg
• qts-prcomp/screeplot.svg
• qts-sample-class/qts-sample-plot-with-highlighted-observations.svg
• qts-sample-class/qts-sample-plot-with-memberships.svg
Error: Test failures
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.3.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [22s/29s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(squat)
Attaching package: 'squat'
The following objects are masked from 'package:stats':
dist, hclust, kmeans, smooth
The following objects are masked from 'package:base':
append, scale
>
> test_check("squat")
Attaching package: 'purrr'
The following object is masked from 'package:testthat':
is_null
i The maximum number of principal component is 15.
i The maximum number of principal component is 15.
The `original_space` boolean argument is not specified. Defaulting to TRUE.
The `plane` length-2 integer vector argument is not specified. Defaulting to 1:2.
i The maximum number of principal component is 15.
The `original_space` boolean argument is not specified. Defaulting to TRUE.
[ FAIL 6 | WARN 0 | SKIP 28 | PASS 27 ]
══ Skipped tests (28) ══════════════════════════════════════════════════════════
• On CRAN (28): 'test-DTW.R:2:3', 'test-interface.R:2:3',
'test-interface.R:7:3', 'test-interface.R:12:3', 'test-interface.R:24:3',
'test-interface.R:31:3', 'test-interface.R:36:3', 'test-interface.R:41:3',
'test-interface.R:46:3', 'test-qts-class.R:15:3', 'test-qts-class.R:23:3',
'test-qts-class.R:31:3', 'test-qts-class.R:49:3', 'test-qts-dist.R:5:3',
'test-qts-dist.R:15:3', 'test-qts-prcomp.R:3:3', 'test-qts-prcomp.R:21:3',
'test-qts-sample-class.R:7:3', 'test-qts-sample-class.R:18:5',
'test-qts-sample-class.R:30:3', 'test-qts-sample-class.R:67:3',
'test-qts-sample-class.R:71:3', 'test-qts-sample-class.R:75:3',
'test-qts-sample-class.R:91:3', 'test-qts-transformations.R:2:3',
'test-qts-transformations.R:6:3', 'test-qts-transformations.R:11:3',
'test-qts-transformations.R:16:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-qts-dbscan.R:8:3'): Function dbscan.qts_sample() works ─────────
Error in `check_option_compatibility(is_domain_interval = is_domain_interval,
transformation = transformation, warping_class = warping_class,
metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant.
Backtrace:
▆
1. ├─squat::dbscan(vespa64$igp[1:10]) at test-qts-dbscan.R:8:3
2. └─squat:::dbscan.qts_sample(vespa64$igp[1:10])
3. └─fdacluster::fdadbscan(...)
4. └─fdacluster:::check_option_compatibility(...)
5. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.")
6. └─rlang::abort(...)
── Error ('test-qts-dist.R:9:3'): Function dist.qts_sample() works via fdacluster pkg ──
Error in `fdacluster::fdadist(x = l$grid, y = l$values, warping_class = warping_class,
metric = metric, cluster_on_phase = cluster_on_phase, labels = labels)`: `warping_class` must be one of "none", "shift", "dilation", "affine", or "bpd", not "affine".
Backtrace:
▆
1. ├─squat::dist(vespa64$igp[1:5]) at test-qts-dist.R:9:3
2. └─squat:::dist.qts_sample(vespa64$igp[1:5])
3. └─fdacluster::fdadist(warping_class = warping_class)
4. └─rlang::arg_match(warping_class)
5. └─rlang::abort(msg, call = error_call, arg = error_arg)
── Error ('test-qts-hclust.R:7:3'): Function hclust.qts_sample() works ─────────
Error in `check_option_compatibility(is_domain_interval = is_domain_interval,
transformation = transformation, warping_class = warping_class,
metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant.
Backtrace:
▆
1. ├─squat::hclust(vespa64$igp[1:10], n_clusters = 2) at test-qts-hclust.R:7:3
2. └─squat:::hclust.qts_sample(vespa64$igp[1:10], n_clusters = 2)
3. └─fdacluster::fdahclust(...)
4. └─fdacluster:::check_option_compatibility(...)
5. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.")
6. └─rlang::abort(...)
── Error ('test-qts-kmeans.R:8:5'): Function kmeans.qts_sample() works ─────────
Error in `check_option_compatibility(is_domain_interval = is_domain_interval,
transformation = transformation, warping_class = warping_class,
metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant.
Backtrace:
▆
1. ├─withr::with_seed(...) at test-qts-kmeans.R:7:3
2. │ └─withr::with_preserve_seed(...)
3. ├─squat::kmeans(vespa64$igp[1:10], n_clusters = 2) at test-qts-kmeans.R:8:5
4. └─squat:::kmeans.qts_sample(vespa64$igp[1:10], n_clusters = 2)
5. └─fdacluster::fdakmeans(...)
6. └─fdacluster:::check_option_compatibility(...)
7. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.")
8. └─rlang::abort(...)
── Error ('test-qts-kmeans.R:15:5'): Visualization code for k-means work ───────
Error in `check_option_compatibility(is_domain_interval = is_domain_interval,
transformation = transformation, warping_class = warping_class,
metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant.
Backtrace:
▆
1. ├─withr::with_seed(...) at test-qts-kmeans.R:14:3
2. │ └─withr::with_preserve_seed(...)
3. ├─squat::kmeans(vespa64$igp[1:10], n_clusters = 2) at test-qts-kmeans.R:15:5
4. └─squat:::kmeans.qts_sample(vespa64$igp[1:10], n_clusters = 2)
5. └─fdacluster::fdakmeans(...)
6. └─fdacluster:::check_option_compatibility(...)
7. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.")
8. └─rlang::abort(...)
── Error ('test-qts-kmeans.R:26:5'): Visualization functions for PCA work ──────
Error in `check_option_compatibility(is_domain_interval = is_domain_interval,
transformation = transformation, warping_class = warping_class,
metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant.
Backtrace:
▆
1. ├─withr::with_seed(...) at test-qts-kmeans.R:25:3
2. │ └─withr::with_preserve_seed(...)
3. ├─squat::kmeans(vespa64$igp[1:10], n_clusters = 2) at test-qts-kmeans.R:26:5
4. └─squat:::kmeans.qts_sample(vespa64$igp[1:10], n_clusters = 2)
5. └─fdacluster::fdakmeans(...)
6. └─fdacluster:::check_option_compatibility(...)
7. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.")
8. └─rlang::abort(...)
[ FAIL 6 | WARN 0 | SKIP 28 | PASS 27 ]
Deleting unused snapshots:
• qts-class/qts-plot-with-change-points.svg
• qts-kmeans/k-means-plot.svg
• qts-prcomp/colored-score-plot.svg
• qts-prcomp/score-plot.svg
• qts-prcomp/screeplot.svg
• qts-sample-class/qts-sample-plot-with-highlighted-observations.svg
• qts-sample-class/qts-sample-plot-with-memberships.svg
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.3.0
Check: installed package size
Result: NOTE
installed size is 13.4Mb
sub-directories of 1Mb or more:
data 1.1Mb
help 1.1Mb
libs 10.9Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 0.3.0
Check: tests
Result: ERROR
Running 'testthat.R' [19s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(squat)
Attaching package: 'squat'
The following objects are masked from 'package:stats':
dist, hclust, kmeans, smooth
The following objects are masked from 'package:base':
append, scale
>
> test_check("squat")
Attaching package: 'purrr'
The following object is masked from 'package:testthat':
is_null
i The maximum number of principal component is 15.
i The maximum number of principal component is 15.
The `original_space` boolean argument is not specified. Defaulting to TRUE.
The `plane` length-2 integer vector argument is not specified. Defaulting to 1:2.
i The maximum number of principal component is 15.
The `original_space` boolean argument is not specified. Defaulting to TRUE.
[ FAIL 6 | WARN 0 | SKIP 28 | PASS 27 ]
══ Skipped tests (28) ══════════════════════════════════════════════════════════
• On CRAN (28): 'test-DTW.R:2:3', 'test-interface.R:2:3',
'test-interface.R:7:3', 'test-interface.R:12:3', 'test-interface.R:24:3',
'test-interface.R:31:3', 'test-interface.R:36:3', 'test-interface.R:41:3',
'test-interface.R:46:3', 'test-qts-class.R:15:3', 'test-qts-class.R:23:3',
'test-qts-class.R:31:3', 'test-qts-class.R:49:3', 'test-qts-dist.R:5:3',
'test-qts-dist.R:15:3', 'test-qts-prcomp.R:3:3', 'test-qts-prcomp.R:21:3',
'test-qts-sample-class.R:7:3', 'test-qts-sample-class.R:18:5',
'test-qts-sample-class.R:30:3', 'test-qts-sample-class.R:67:3',
'test-qts-sample-class.R:71:3', 'test-qts-sample-class.R:75:3',
'test-qts-sample-class.R:91:3', 'test-qts-transformations.R:2:3',
'test-qts-transformations.R:6:3', 'test-qts-transformations.R:11:3',
'test-qts-transformations.R:16:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-qts-dbscan.R:8:3'): Function dbscan.qts_sample() works ─────────
Error in `check_option_compatibility(is_domain_interval = is_domain_interval,
transformation = transformation, warping_class = warping_class,
metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant.
Backtrace:
▆
1. ├─squat::dbscan(vespa64$igp[1:10]) at test-qts-dbscan.R:8:3
2. └─squat:::dbscan.qts_sample(vespa64$igp[1:10])
3. └─fdacluster::fdadbscan(...)
4. └─fdacluster:::check_option_compatibility(...)
5. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.")
6. └─rlang::abort(...)
── Error ('test-qts-dist.R:9:3'): Function dist.qts_sample() works via fdacluster pkg ──
Error in `fdacluster::fdadist(x = l$grid, y = l$values, warping_class = warping_class,
metric = metric, cluster_on_phase = cluster_on_phase, labels = labels)`: `warping_class` must be one of "none", "shift", "dilation", "affine", or "bpd", not "affine".
Backtrace:
▆
1. ├─squat::dist(vespa64$igp[1:5]) at test-qts-dist.R:9:3
2. └─squat:::dist.qts_sample(vespa64$igp[1:5])
3. └─fdacluster::fdadist(warping_class = warping_class)
4. └─rlang::arg_match(warping_class)
5. └─rlang::abort(msg, call = error_call, arg = error_arg)
── Error ('test-qts-hclust.R:7:3'): Function hclust.qts_sample() works ─────────
Error in `check_option_compatibility(is_domain_interval = is_domain_interval,
transformation = transformation, warping_class = warping_class,
metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant.
Backtrace:
▆
1. ├─squat::hclust(vespa64$igp[1:10], n_clusters = 2) at test-qts-hclust.R:7:3
2. └─squat:::hclust.qts_sample(vespa64$igp[1:10], n_clusters = 2)
3. └─fdacluster::fdahclust(...)
4. └─fdacluster:::check_option_compatibility(...)
5. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.")
6. └─rlang::abort(...)
── Error ('test-qts-kmeans.R:8:5'): Function kmeans.qts_sample() works ─────────
Error in `check_option_compatibility(is_domain_interval = is_domain_interval,
transformation = transformation, warping_class = warping_class,
metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant.
Backtrace:
▆
1. ├─withr::with_seed(...) at test-qts-kmeans.R:7:3
2. │ └─withr::with_preserve_seed(...)
3. ├─squat::kmeans(vespa64$igp[1:10], n_clusters = 2) at test-qts-kmeans.R:8:5
4. └─squat:::kmeans.qts_sample(vespa64$igp[1:10], n_clusters = 2)
5. └─fdacluster::fdakmeans(...)
6. └─fdacluster:::check_option_compatibility(...)
7. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.")
8. └─rlang::abort(...)
── Error ('test-qts-kmeans.R:15:5'): Visualization code for k-means work ───────
Error in `check_option_compatibility(is_domain_interval = is_domain_interval,
transformation = transformation, warping_class = warping_class,
metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant.
Backtrace:
▆
1. ├─withr::with_seed(...) at test-qts-kmeans.R:14:3
2. │ └─withr::with_preserve_seed(...)
3. ├─squat::kmeans(vespa64$igp[1:10], n_clusters = 2) at test-qts-kmeans.R:15:5
4. └─squat:::kmeans.qts_sample(vespa64$igp[1:10], n_clusters = 2)
5. └─fdacluster::fdakmeans(...)
6. └─fdacluster:::check_option_compatibility(...)
7. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.")
8. └─rlang::abort(...)
── Error ('test-qts-kmeans.R:26:5'): Visualization functions for PCA work ──────
Error in `check_option_compatibility(is_domain_interval = is_domain_interval,
transformation = transformation, warping_class = warping_class,
metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant.
Backtrace:
▆
1. ├─withr::with_seed(...) at test-qts-kmeans.R:25:3
2. │ └─withr::with_preserve_seed(...)
3. ├─squat::kmeans(vespa64$igp[1:10], n_clusters = 2) at test-qts-kmeans.R:26:5
4. └─squat:::kmeans.qts_sample(vespa64$igp[1:10], n_clusters = 2)
5. └─fdacluster::fdakmeans(...)
6. └─fdacluster:::check_option_compatibility(...)
7. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.")
8. └─rlang::abort(...)
[ FAIL 6 | WARN 0 | SKIP 28 | PASS 27 ]
Deleting unused snapshots:
• qts-class/qts-plot-with-change-points.svg
• qts-kmeans/k-means-plot.svg
• qts-prcomp/colored-score-plot.svg
• qts-prcomp/score-plot.svg
• qts-prcomp/screeplot.svg
• qts-sample-class/qts-sample-plot-with-highlighted-observations.svg
• qts-sample-class/qts-sample-plot-with-memberships.svg
Error: Test failures
Execution halted
Flavor: r-release-windows-x86_64
Version: 0.3.0
Check: tests
Result: ERROR
Running 'testthat.R' [27s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(squat)
Attaching package: 'squat'
The following objects are masked from 'package:stats':
dist, hclust, kmeans, smooth
The following objects are masked from 'package:base':
append, scale
>
> test_check("squat")
Attaching package: 'purrr'
The following object is masked from 'package:testthat':
is_null
i The maximum number of principal component is 15.
i The maximum number of principal component is 15.
The `original_space` boolean argument is not specified. Defaulting to TRUE.
The `plane` length-2 integer vector argument is not specified. Defaulting to 1:2.
i The maximum number of principal component is 15.
The `original_space` boolean argument is not specified. Defaulting to TRUE.
[ FAIL 6 | WARN 0 | SKIP 28 | PASS 27 ]
══ Skipped tests (28) ══════════════════════════════════════════════════════════
• On CRAN (28): 'test-DTW.R:2:3', 'test-interface.R:2:3',
'test-interface.R:7:3', 'test-interface.R:12:3', 'test-interface.R:24:3',
'test-interface.R:31:3', 'test-interface.R:36:3', 'test-interface.R:41:3',
'test-interface.R:46:3', 'test-qts-class.R:15:3', 'test-qts-class.R:23:3',
'test-qts-class.R:31:3', 'test-qts-class.R:49:3', 'test-qts-dist.R:5:3',
'test-qts-dist.R:15:3', 'test-qts-prcomp.R:3:3', 'test-qts-prcomp.R:21:3',
'test-qts-sample-class.R:7:3', 'test-qts-sample-class.R:18:5',
'test-qts-sample-class.R:30:3', 'test-qts-sample-class.R:67:3',
'test-qts-sample-class.R:71:3', 'test-qts-sample-class.R:75:3',
'test-qts-sample-class.R:91:3', 'test-qts-transformations.R:2:3',
'test-qts-transformations.R:6:3', 'test-qts-transformations.R:11:3',
'test-qts-transformations.R:16:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-qts-dbscan.R:8:3'): Function dbscan.qts_sample() works ─────────
Error in `check_option_compatibility(is_domain_interval = is_domain_interval,
transformation = transformation, warping_class = warping_class,
metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant.
Backtrace:
▆
1. ├─squat::dbscan(vespa64$igp[1:10]) at test-qts-dbscan.R:8:3
2. └─squat:::dbscan.qts_sample(vespa64$igp[1:10])
3. └─fdacluster::fdadbscan(...)
4. └─fdacluster:::check_option_compatibility(...)
5. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.")
6. └─rlang::abort(...)
── Error ('test-qts-dist.R:9:3'): Function dist.qts_sample() works via fdacluster pkg ──
Error in `fdacluster::fdadist(x = l$grid, y = l$values, warping_class = warping_class,
metric = metric, cluster_on_phase = cluster_on_phase, labels = labels)`: `warping_class` must be one of "none", "shift", "dilation", "affine", or "bpd", not "affine".
Backtrace:
▆
1. ├─squat::dist(vespa64$igp[1:5]) at test-qts-dist.R:9:3
2. └─squat:::dist.qts_sample(vespa64$igp[1:5])
3. └─fdacluster::fdadist(warping_class = warping_class)
4. └─rlang::arg_match(warping_class)
5. └─rlang::abort(msg, call = error_call, arg = error_arg)
── Error ('test-qts-hclust.R:7:3'): Function hclust.qts_sample() works ─────────
Error in `check_option_compatibility(is_domain_interval = is_domain_interval,
transformation = transformation, warping_class = warping_class,
metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant.
Backtrace:
▆
1. ├─squat::hclust(vespa64$igp[1:10], n_clusters = 2) at test-qts-hclust.R:7:3
2. └─squat:::hclust.qts_sample(vespa64$igp[1:10], n_clusters = 2)
3. └─fdacluster::fdahclust(...)
4. └─fdacluster:::check_option_compatibility(...)
5. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.")
6. └─rlang::abort(...)
── Error ('test-qts-kmeans.R:8:5'): Function kmeans.qts_sample() works ─────────
Error in `check_option_compatibility(is_domain_interval = is_domain_interval,
transformation = transformation, warping_class = warping_class,
metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant.
Backtrace:
▆
1. ├─withr::with_seed(...) at test-qts-kmeans.R:7:3
2. │ └─withr::with_preserve_seed(...)
3. ├─squat::kmeans(vespa64$igp[1:10], n_clusters = 2) at test-qts-kmeans.R:8:5
4. └─squat:::kmeans.qts_sample(vespa64$igp[1:10], n_clusters = 2)
5. └─fdacluster::fdakmeans(...)
6. └─fdacluster:::check_option_compatibility(...)
7. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.")
8. └─rlang::abort(...)
── Error ('test-qts-kmeans.R:15:5'): Visualization code for k-means work ───────
Error in `check_option_compatibility(is_domain_interval = is_domain_interval,
transformation = transformation, warping_class = warping_class,
metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant.
Backtrace:
▆
1. ├─withr::with_seed(...) at test-qts-kmeans.R:14:3
2. │ └─withr::with_preserve_seed(...)
3. ├─squat::kmeans(vespa64$igp[1:10], n_clusters = 2) at test-qts-kmeans.R:15:5
4. └─squat:::kmeans.qts_sample(vespa64$igp[1:10], n_clusters = 2)
5. └─fdacluster::fdakmeans(...)
6. └─fdacluster:::check_option_compatibility(...)
7. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.")
8. └─rlang::abort(...)
── Error ('test-qts-kmeans.R:26:5'): Visualization functions for PCA work ──────
Error in `check_option_compatibility(is_domain_interval = is_domain_interval,
transformation = transformation, warping_class = warping_class,
metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant.
Backtrace:
▆
1. ├─withr::with_seed(...) at test-qts-kmeans.R:25:3
2. │ └─withr::with_preserve_seed(...)
3. ├─squat::kmeans(vespa64$igp[1:10], n_clusters = 2) at test-qts-kmeans.R:26:5
4. └─squat:::kmeans.qts_sample(vespa64$igp[1:10], n_clusters = 2)
5. └─fdacluster::fdakmeans(...)
6. └─fdacluster:::check_option_compatibility(...)
7. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.")
8. └─rlang::abort(...)
[ FAIL 6 | WARN 0 | SKIP 28 | PASS 27 ]
Deleting unused snapshots:
• qts-class/qts-plot-with-change-points.svg
• qts-kmeans/k-means-plot.svg
• qts-prcomp/colored-score-plot.svg
• qts-prcomp/score-plot.svg
• qts-prcomp/screeplot.svg
• qts-sample-class/qts-sample-plot-with-highlighted-observations.svg
• qts-sample-class/qts-sample-plot-with-memberships.svg
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64