Functions for assigning taxonomy to NCBI accession numbers and taxon IDs based on NCBI's accession2taxid and taxdump files. This package allows the user to download NCBI data dumps and create a local database for fast and local taxonomic assignment.
Version: | 0.10.6 |
Depends: | R (≥ 3.0.0) |
Imports: | RSQLite, R.utils, data.table, curl (≥ 5.0.0) |
Suggests: | testthat, knitr, rmarkdown |
Published: | 2023-12-15 |
DOI: | 10.32614/CRAN.package.taxonomizr |
Author: | Scott Sherrill-Mix [aut, cre] |
Maintainer: | Scott Sherrill-Mix <ssm at msu.edu> |
BugReports: | https://github.com/sherrillmix/taxonomizr/issues |
License: | GPL-2 | GPL-3 | file LICENSE [expanded from: GPL (≥ 2) | file LICENSE] |
NeedsCompilation: | yes |
Materials: | README |
CRAN checks: | taxonomizr results |
Reference manual: | taxonomizr.pdf |
Vignettes: |
taxonomizr usage |
Package source: | taxonomizr_0.10.6.tar.gz |
Windows binaries: | r-devel: taxonomizr_0.10.6.zip, r-release: taxonomizr_0.10.6.zip, r-oldrel: taxonomizr_0.10.6.zip |
macOS binaries: | r-release (arm64): taxonomizr_0.10.6.tgz, r-oldrel (arm64): taxonomizr_0.10.6.tgz, r-release (x86_64): taxonomizr_0.10.6.tgz, r-oldrel (x86_64): taxonomizr_0.10.6.tgz |
Old sources: | taxonomizr archive |
Reverse imports: | DBTC |
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