Infrastructure for ordering objects with an implementation of several seriation/sequencing/ordination techniques to reorder matrices, dissimilarity matrices, and dendrograms. Also provides (optimally) reordered heatmaps, color images and clustering visualizations like dissimilarity plots, and visual assessment of cluster tendency plots (VAT and iVAT). Hahsler et al (2008) <doi:10.18637/jss.v025.i03>.
Version: | 1.5.7 |
Depends: | R (≥ 2.14.0) |
Imports: | ca, cluster, colorspace, foreach, gclus, grDevices, grid, MASS, qap, registry, stats, TSP, vegan |
Suggests: | dbscan, DendSer, dendextend, doParallel, GA, ggplot2, keras, Rtsne, scales, smacof, tensorflow, testthat, umap |
Published: | 2024-12-05 |
DOI: | 10.32614/CRAN.package.seriation |
Author: | Michael Hahsler |
Maintainer: | Michael Hahsler <mhahsler at lyle.smu.edu> |
BugReports: | https://github.com/mhahsler/seriation/issues |
License: | GPL-3 |
Copyright: | The code in src/bbwrcg.f, src/arsa.f and src/bburcg.f are Copyright (C) 2005 M. Brusco, H.F. Koehn, and S. Stahl. All other code is Copyright (C) Michael Hahsler, Christian Buchta, and Kurt Hornik. |
URL: | https://github.com/mhahsler/seriation |
NeedsCompilation: | yes |
Classification/ACM: | G.1.6, G.2.1, G.4 |
Citation: | seriation citation info |
Materials: | README NEWS |
In views: | Cluster |
CRAN checks: | seriation results |
Reference manual: | seriation.pdf |
Vignettes: |
An Introduction to the R package seriation (source, R code) |
Package source: | seriation_1.5.7.tar.gz |
Windows binaries: | r-devel: seriation_1.5.7.zip, r-release: seriation_1.5.7.zip, r-oldrel: seriation_1.5.7.zip |
macOS binaries: | r-devel (arm64): seriation_1.5.7.tgz, r-release (arm64): seriation_1.5.7.tgz, r-oldrel (arm64): seriation_1.5.7.tgz, r-devel (x86_64): seriation_1.5.7.tgz, r-release (x86_64): seriation_1.5.7.tgz, r-oldrel (x86_64): seriation_1.5.7.tgz |
Old sources: | seriation archive |
Reverse depends: | adepro, ClusteredMutations, DendSer, elaborator, NetSAM |
Reverse imports: | arulesViz, baizer, corrr, HarmonizR, heatmaply, MEDseq, methylscaper, qlcVisualize, RMaCzek, sechm, treeheatr |
Reverse suggests: | ChemoSpec, corrgram, corrplot, dendextend, dendsort, disclapmix, flexclust, ggraph, ockc, protti, SFS, tidygraph, vcdExtra |
Reverse enhances: | relations |
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