mbX: A Comprehensive Microbiome Data Processing Pipeline
Provides tools for cleaning, processing, and preparing microbiome
sequencing data (e.g., 16S rRNA) for downstream analysis. Supports CSV,
TXT, and Excel file formats. The main function, ezclean(), automates
microbiome data transformation, including format validation,
transposition, numeric conversion, and metadata integration. It also
handles taxonomic levels efficiently, resolves duplicated taxa entries,
and outputs a well-structured, analysis-ready dataset. The companion
functions ezstat() run statistical tests and summarize results, while
ezviz() produces publication-ready visualizations.
| Version: |
0.2.0 |
| Depends: |
R (≥ 4.1.0) |
| Imports: |
tools, readxl, openxlsx, dplyr, tidyr, ggplot2, rstatix, tibble, FSA, multcompView |
| Suggests: |
knitr, rmarkdown |
| Published: |
2025-07-23 |
| DOI: |
10.32614/CRAN.package.mbX |
| Author: |
Utsav Lamichhane [aut, cre] |
| Maintainer: |
Utsav Lamichhane <utsav.lamichhane at gmail.com> |
| License: |
MIT + file LICENSE |
| NeedsCompilation: |
no |
| Materials: |
README |
| CRAN checks: |
mbX results |
Documentation:
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