Introduction to lessR
library(lessR)
#>
#> lessR 4.4.0 feedback: gerbing@pdx.edu
#> --------------------------------------------------------------
#> > d <- Read("") Read text, Excel, SPSS, SAS, or R data file
#> d is default data frame, data= in analysis routines optional
#>
#> Many examples of reading, writing, and manipulating data,
#> graphics, testing means and proportions, regression, factor analysis,
#> customization, forecasting, and aggregation from pivot tables
#> Enter: browseVignettes("lessR")
#>
#> View lessR updates, now including time series forecasting
#> Enter: news(package="lessR")
#>
#> Interactive data analysis
#> Enter: interact()
#>
#> Attaching package: 'lessR'
#> The following object is masked from 'package:base':
#>
#> sort_by
The vignette examples of using lessR became so
extensive that the maximum R package installation size was exceeded.
Find a limited number of examples below. Find many more vignette
examples at:
lessR
examples
Read Data
more
examples of reading and writing data files
Many of the following examples analyze data in the Employee
data set, included with lessR. To read an internal
lessR data set, just pass the name of the data set to
the lessR function Read(). Read the
Employee data into the data frame d. For data sets
other than those provided by lessR, enter the path name
or URL between the quotes, or leave the quotes empty to browse for the
data file on your computer system. See the Read and Write
vignette for more details.
d <- Read("Employee")
#>
#> >>> Suggestions
#> Recommended binary format for data files: feather
#> Create with Write(d, "your_file", format="feather")
#> More details about your data, Enter: details() for d, or details(name)
#>
#> Data Types
#> ------------------------------------------------------------
#> character: Non-numeric data values
#> integer: Numeric data values, integers only
#> double: Numeric data values with decimal digits
#> ------------------------------------------------------------
#>
#> Variable Missing Unique
#> Name Type Values Values Values First and last values
#> ------------------------------------------------------------------------------------------
#> 1 Years integer 36 1 16 7 NA 7 ... 1 2 10
#> 2 Gender character 37 0 2 M M W ... W W M
#> 3 Dept character 36 1 5 ADMN SALE FINC ... MKTG SALE FINC
#> 4 Salary double 37 0 37 53788.26 94494.58 ... 56508.32 57562.36
#> 5 JobSat character 35 2 3 med low high ... high low high
#> 6 Plan integer 37 0 3 1 1 2 ... 2 2 1
#> 7 Pre integer 37 0 27 82 62 90 ... 83 59 80
#> 8 Post integer 37 0 22 92 74 86 ... 90 71 87
#> ------------------------------------------------------------------------------------------
d is the default name of the data frame for the
lessR data analysis functions. Explicitly access the
data frame with the data parameter in the analysis
functions.
As an option, also read the table of variable labels. Create the
table formatted as two columns. The first column is the variable name
and the second column is the corresponding variable label. Not all
variables need be entered into the table. The table can be a
csv file or an Excel file.
Read the file of variable labels into the l data frame,
currently the only permitted name. The labels will be displayed on both
the text and visualization output. Each displayed label is the variable
name juxtaposed with the corresponding label, as shown in the following
output.
l <- rd("Employee_lbl")
#>
#> >>> Suggestions
#> Recommended binary format for data files: feather
#> Create with Write(d, "your_file", format="feather")
#> More details about your data, Enter: details() for d, or details(name)
#>
#> Data Types
#> ------------------------------------------------------------
#> character: Non-numeric data values
#> ------------------------------------------------------------
#>
#> Variable Missing Unique
#> Name Type Values Values Values First and last values
#> ------------------------------------------------------------------------------------------
#> 1 label character 8 0 8 Time of Company Employment ... Test score on legal issues after instruction
#> ------------------------------------------------------------------------------------------
l
#> label
#> Years Time of Company Employment
#> Gender Man or Woman
#> Dept Department Employed
#> Salary Annual Salary (USD)
#> JobSat Satisfaction with Work Environment
#> Plan 1=GoodHealth, 2=GetWell, 3=BestCare
#> Pre Test score on legal issues before instruction
#> Post Test score on legal issues after instruction
Bar Chart
more
examples of bar charts and pie charts
Consider the categorical variable Dept in the Employee data table.
Use BarChart() to tabulate and display the visualization of
the number of employees in each department, here relying upon the
default data frame (table) named d. Otherwise add the
data= option for a data frame with another name.
#> >>> Suggestions
#> BarChart(Dept, horiz=TRUE) # horizontal bar chart
#> BarChart(Dept, fill="reds") # red bars of varying lightness
#> PieChart(Dept) # doughnut (ring) chart
#> Plot(Dept) # bubble plot
#> Plot(Dept, stat="count") # lollipop plot
#>
#> --- Dept ---
#>
#> Missing Values: 1
#>
#> ACCT ADMN FINC MKTG SALE Total
#> Frequencies: 5 6 4 6 15 36
#> Proportions: 0.139 0.167 0.111 0.167 0.417 1.000
#>
#> Chi-squared test of null hypothesis of equal probabilities
#> Chisq = 10.944, df = 4, p-value = 0.027
Specify a single fill color with the fill parameter, the
edge color of the bars with color. Set the transparency
level with transparency. Against a lighter background,
display the value for each bar with a darker color using the
labels_color parameter. To specify a color, use color
names, specify a color with either its rgb() or
hcl() color space coordinates, or use the
lessR custom color palette function
getColors().
BarChart(Dept, fill="darkred", color="black", transparency=.8,
labels_color="black")
#> >>> Suggestions
#> BarChart(Dept, horiz=TRUE) # horizontal bar chart
#> BarChart(Dept, fill="reds") # red bars of varying lightness
#> PieChart(Dept) # doughnut (ring) chart
#> Plot(Dept) # bubble plot
#> Plot(Dept, stat="count") # lollipop plot
#>
#> --- Dept ---
#>
#> Missing Values: 1
#>
#> ACCT ADMN FINC MKTG SALE Total
#> Frequencies: 5 6 4 6 15 36
#> Proportions: 0.139 0.167 0.111 0.167 0.417 1.000
#>
#> Chi-squared test of null hypothesis of equal probabilities
#> Chisq = 10.944, df = 4, p-value = 0.027
Use the theme parameter to change the entire color
theme: “colors”, “lightbronze”, “dodgerblue”, “slatered”, “darkred”,
“gray”, “gold”, “darkgreen”, “blue”, “red”, “rose”, “green”, “purple”,
“sienna”, “brown”, “orange”, “white”, and “light”. In this example,
changing the full theme accomplishes the same as changing the fill
color. Turn off the displayed value on each bar with the parameter
labels set to off. Specify a horizontal bar
chart with base R parameter horiz.
BarChart(Dept, theme="gray", labels="off", horiz=TRUE)
#> >>> Suggestions
#> BarChart(Dept, horiz=TRUE) # horizontal bar chart
#> BarChart(Dept, fill="reds") # red bars of varying lightness
#> PieChart(Dept) # doughnut (ring) chart
#> Plot(Dept) # bubble plot
#> Plot(Dept, stat="count") # lollipop plot
#>
#> --- Dept ---
#>
#> Missing Values: 1
#>
#> ACCT ADMN FINC MKTG SALE Total
#> Frequencies: 5 6 4 6 15 36
#> Proportions: 0.139 0.167 0.111 0.167 0.417 1.000
#>
#> Chi-squared test of null hypothesis of equal probabilities
#> Chisq = 10.944, df = 4, p-value = 0.027
Histogram
more
examples of histograms
Consider the continuous variable Salary in the Employee data
table. Use Histogram() to tabulate and display the number
of employees in each department, here relying upon the default data
frame (table) named d, so the data= parameter is
not needed.
#> >>> Suggestions
#> bin_width: set the width of each bin
#> bin_start: set the start of the first bin
#> bin_end: set the end of the last bin
#> Histogram(Salary, density=TRUE) # smoothed curve + histogram
#> Plot(Salary) # Violin/Box/Scatterplot (VBS) plot
#>
#> --- Salary ---
#>
#> n miss mean sd min mdn max
#> 37 0 73795.557 21799.533 46124.970 69547.600 134419.230
#>
#>
#>
#> --- Outliers --- from the box plot: 1
#>
#> Small Large
#> ----- -----
#> 134419.2
#>
#>
#> Bin Width: 10000
#> Number of Bins: 10
#>
#> Bin Midpnt Count Prop Cumul.c Cumul.p
#> ---------------------------------------------------------
#> 40000 > 50000 45000 4 0.11 4 0.11
#> 50000 > 60000 55000 8 0.22 12 0.32
#> 60000 > 70000 65000 8 0.22 20 0.54
#> 70000 > 80000 75000 5 0.14 25 0.68
#> 80000 > 90000 85000 3 0.08 28 0.76
#> 90000 > 100000 95000 5 0.14 33 0.89
#> 100000 > 110000 105000 1 0.03 34 0.92
#> 110000 > 120000 115000 1 0.03 35 0.95
#> 120000 > 130000 125000 1 0.03 36 0.97
#> 130000 > 140000 135000 1 0.03 37 1.00
#>
By default, the Histogram() function provides a color
theme according to the current, active theme. The function also provides
the corresponding frequency distribution, summary statistics, the table
that lists the count of each category, from which the histogram is
constructed, as well as an outlier analysis based on Tukey’s outlier
detection rules for box plots.
Use the parameters bin_start, bin_width,
and bin_end to customize the histogram.
Easy to change the color, either by changing the color theme with
style(), or just change the fill color with
fill. Can refer to standard R colors, as shown with
lessR function showColors(), or implicitly
invoke the lessR color palette generating function
getColors(). Each 30 degrees of the color wheel is named,
such as "greens", "rusts", etc, and implements
a sequential color palette.
Histogram(Salary, bin_start=35000, bin_width=14000, fill="reds")
#> >>> Suggestions
#> bin_end: set the end of the last bin
#> Histogram(Salary, density=TRUE) # smoothed curve + histogram
#> Plot(Salary) # Violin/Box/Scatterplot (VBS) plot
#>
#> --- Salary ---
#>
#> n miss mean sd min mdn max
#> 37 0 73795.557 21799.533 46124.970 69547.600 134419.230
#>
#>
#>
#> --- Outliers --- from the box plot: 1
#>
#> Small Large
#> ----- -----
#> 134419.2
#>
#>
#> Bin Width: 14000
#> Number of Bins: 8
#>
#> Bin Midpnt Count Prop Cumul.c Cumul.p
#> ---------------------------------------------------------
#> 35000 > 49000 42000 1 0.03 1 0.03
#> 49000 > 63000 56000 14 0.38 15 0.41
#> 63000 > 77000 70000 9 0.24 24 0.65
#> 77000 > 91000 84000 4 0.11 28 0.76
#> 91000 > 105000 98000 5 0.14 33 0.89
#> 105000 > 119000 112000 2 0.05 35 0.95
#> 119000 > 133000 126000 1 0.03 36 0.97
#> 133000 > 147000 140000 1 0.03 37 1.00
#>
Scatterplot
more
examples of scatter plots and related
Specify an X and Y variable with the plot function to obtain a
scatter plot. For two variables, both variables can be any combination
of continuous or categorical. One variable can also be specified. A
scatterplot of two categorical variables yields a bubble plot. Below is
a scatterplot of two continuous variables.
#>
#> >>> Suggestions or enter: style(suggest=FALSE)
#> Plot(Years, Salary, enhance=TRUE) # many options
#> Plot(Years, Salary, fill="skyblue") # interior fill color of points
#> Plot(Years, Salary, fit="lm", fit_se=c(.90,.99)) # fit line, stnd errors
#> Plot(Years, Salary, MD_cut=6) # Mahalanobis distance from center > 6 is an outlier
#>
#>
#> >>> Pearson's product-moment correlation
#>
#> Years: Time of Company Employment
#> Salary: Annual Salary (USD)
#>
#> Number of paired values with neither missing, n = 36
#> Sample Correlation of Years and Salary: r = 0.852
#>
#> Hypothesis Test of 0 Correlation: t = 9.501, df = 34, p-value = 0.000
#> 95% Confidence Interval for Correlation: 0.727 to 0.923
#>
Enhance the default scatterplot with parameter enhance.
The visualization includes the mean of each variable indicated by the
respective line through the scatterplot, the 95% confidence ellipse,
labeled outliers, least-squares regression line with 95% confidence
interval, and the corresponding regression line with the outliers
removed.
Plot(Years, Salary, enhance=TRUE)
#> [Ellipse with Murdoch and Chow's function ellipse from their ellipse package]
#>
#>
#> >>> Suggestions or enter: style(suggest=FALSE)
#> Plot(Years, Salary, color="red") # exterior edge color of points
#> Plot(Years, Salary, fit="lm", fit_se=c(.90,.99)) # fit line, stnd errors
#> Plot(Years, Salary, out_cut=.10) # label top 10% from center as outliers
#>
#> >>> Outlier analysis with Mahalanobis Distance
#>
#> MD ID
#> ----- -----
#> 8.14 18
#> 7.84 34
#>
#> 5.63 31
#> 5.58 19
#> 3.75 4
#> ... ...
#>
#>
#> >>> Pearson's product-moment correlation
#>
#> Years: Time of Company Employment
#> Salary: Annual Salary (USD)
#>
#> Number of paired values with neither missing, n = 36
#> Sample Correlation of Years and Salary: r = 0.852
#>
#> Hypothesis Test of 0 Correlation: t = 9.501, df = 34, p-value = 0.000
#> 95% Confidence Interval for Correlation: 0.727 to 0.923
#>
The default plot for a single continuous variable includes not only
the scatterplot, but also the superimposed violin plot and box plot,
with outliers identified. Call this plot the VBS plot.
Plot(Salary)
#> [Violin/Box/Scatterplot graphics from Deepayan Sarkar's lattice package]
#>
#> >>> Suggestions
#> Plot(Salary, out_cut=2, fences=TRUE, vbs_mean=TRUE) # Label two outliers ...
#> Plot(Salary, box_adj=TRUE) # Adjust boxplot whiskers for asymmetry
#> --- Salary ---
#> Present: 37
#> Missing: 0
#> Total : 37
#>
#> Mean : 73795.557
#> Stnd Dev : 21799.533
#> IQR : 31012.560
#> Skew : 0.190 [medcouple, -1 to 1]
#>
#> Minimum : 46124.970
#> Lower Whisker: 46124.970
#> 1st Quartile : 56772.950
#> Median : 69547.600
#> 3rd Quartile : 87785.510
#> Upper Whisker: 122563.380
#> Maximum : 134419.230
#>
#>
#> --- Outliers --- from the box plot: 1
#>
#> Small Large
#> ----- -----
#> 134419.23
#>
#> Number of duplicated values: 0
#>
#> Parameter values (can be manually set)
#> -------------------------------------------------------
#> size: 0.61 size of plotted points
#> out_size: 0.82 size of plotted outlier points
#> jitter_y: 0.45 random vertical movement of points
#> jitter_x: 0.00 random horizontal movement of points
#> bw: 9529.04 set bandwidth higher for smoother edges
Following is a scatterplot in the form of a bubble plot for two
categorical variables.
#>
#> >>> Suggestions or enter: style(suggest=FALSE)
#> Plot(JobSat, Gender, size_cut=FALSE)
#> Plot(JobSat, Gender, trans=.8, bg="off", grid="off")
#> SummaryStats(JobSat, Gender) # or ss
#>
#> Joint and Marginal Frequencies
#> ------------------------------
#>
#> JobSat
#> Gender high low med Sum
#> M 3 11 4 18
#> W 8 2 7 17
#> Sum 11 13 11 35
#>
#> Cramer's V: 0.515
#>
#> Chi-square Test of Independence:
#> Chisq = 9.301, df = 2, p-value = 0.010
#>
#> Some Parameter values (can be manually set)
#> -------------------------------------------------------
#> radius: 0.22 size of largest bubble
#> power: 0.50 relative bubble sizes
Means and Proportions
Means
more
examples of t-tests and ANOVA
For the independent-groups t-test, specify the response variable to
the left of the tilde, ~, and the categorical variable with
two groups, the grouping variable, to the right of the tilde.
ttest(Salary ~ Gender)
#>
#> Compare Salary across Gender with levels M and W
#> Grouping Variable: Gender, Man or Woman
#> Response Variable: Salary, Annual Salary (USD)
#>
#>
#> ------ Describe ------
#>
#> Salary for Gender M: n.miss = 0, n = 18, mean = 81147.458, sd = 23128.436
#> Salary for Gender W: n.miss = 0, n = 19, mean = 66830.598, sd = 18438.456
#>
#> Mean Difference of Salary: 14316.860
#>
#> Weighted Average Standard Deviation: 20848.636
#>
#>
#> ------ Assumptions ------
#>
#> Note: These hypothesis tests can perform poorly, and the
#> t-test is typically robust to violations of assumptions.
#> Use as heuristic guides instead of interpreting literally.
#>
#> Null hypothesis, for each group, is a normal distribution of Salary.
#> Group M Shapiro-Wilk normality test: W = 0.962, p-value = 0.647
#> Group W Shapiro-Wilk normality test: W = 0.828, p-value = 0.003
#>
#> Null hypothesis is equal variances of Salary, homogeneous.
#> Variance Ratio test: F = 534924536.348/339976675.129 = 1.573, df = 17;18, p-value = 0.349
#> Levene's test, Brown-Forsythe: t = 1.302, df = 35, p-value = 0.201
#>
#>
#> ------ Infer ------
#>
#> --- Assume equal population variances of Salary for each Gender
#>
#> t-cutoff for 95% range of variation: tcut = 2.030
#> Standard Error of Mean Difference: SE = 6857.494
#>
#> Hypothesis Test of 0 Mean Diff: t-value = 2.088, df = 35, p-value = 0.044
#>
#> Margin of Error for 95% Confidence Level: 13921.454
#> 95% Confidence Interval for Mean Difference: 395.406 to 28238.314
#>
#>
#> --- Do not assume equal population variances of Salary for each Gender
#>
#> t-cutoff: tcut = 2.036
#> Standard Error of Mean Difference: SE = 6900.112
#>
#> Hypothesis Test of 0 Mean Diff: t = 2.075, df = 32.505, p-value = 0.046
#>
#> Margin of Error for 95% Confidence Level: 14046.505
#> 95% Confidence Interval for Mean Difference: 270.355 to 28363.365
#>
#>
#> ------ Effect Size ------
#>
#> --- Assume equal population variances of Salary for each Gender
#>
#> Standardized Mean Difference of Salary, Cohen's d: 0.687
#>
#>
#> ------ Practical Importance ------
#>
#> Minimum Mean Difference of practical importance: mmd
#> Minimum Standardized Mean Difference of practical importance: msmd
#> Neither value specified, so no analysis
#>
#>
#> ------ Graphics Smoothing Parameter ------
#>
#> Density bandwidth for Gender M: 14777.329
#> Density bandwidth for Gender W: 11630.959
Next, to analyze the operational efficiency of a weeping device, do
the two way independent groups ANOVA analyzing the variable
breaks across levels of tension and wool.
Specify the second independent variable preceded by a *
sign.
ANOVA(breaks ~ tension * wool, data=warpbreaks)
#>
#> BACKGROUND
#>
#> Response Variable: breaks
#>
#> Factor Variable 1: tension
#> Levels: L M H
#>
#> Factor Variable 2: wool
#> Levels: A B
#>
#> Number of cases (rows) of data: 54
#> Number of cases retained for analysis: 54
#>
#> Two-way Between Groups ANOVA
#>
#>
#> DESCRIPTIVE STATISTICS
#>
#>
#> Equal cell sizes, so balanced design
#>
#>
#> tension
#> wool L M H
#> A 9 9 9
#> B 9 9 9
#>
#>
#> tension
#> wool L M H
#> A 44.56 24.00 24.56
#> B 28.22 28.78 18.78
#>
#> tension
#>
#> L M H
#> 1 36.39 26.39 21.67
#>
#> wool
#>
#> A B
#> 1 31.04 25.26
#>
#> NA
#>
#>
#>
#> tension
#> wool L M H
#> A 18.10 8.66 10.27
#> B 9.86 9.43 4.89
#>
#>
#> ANOVA
#>
#>
#> df Sum Sq Mean Sq F-value p-value
#> tension 2 2034.26 1017.13 8.50 0.0007
#> wool 1 450.67 450.67 3.77 0.0582
#> tension:wool 2 1002.78 501.39 4.19 0.0210
#> Residuals 48 5745.11 119.69
#>
#> Partial Omega Squared for tension: 0.217
#> Partial Omega Squared for wool: 0.049
#> Partial Omega Squared for tension & wool: 0.106
#>
#> Cohen's f for tension: 0.527
#> Cohen's f for wool: 0.226
#> Cohen's f for tension_&_wool: 0.344
#>
#>
#> TUKEY MULTIPLE COMPARISONS OF MEANS
#>
#> Family-wise Confidence Level: 0.95
#>
#> Factor: tension
#> -------------------------------
#> diff lwr upr p adj
#> M-L -10.00 -18.82 -1.18 0.02
#> H-L -14.72 -23.54 -5.90 0.00
#> H-M -4.72 -13.54 4.10 0.40
#>
#> Factor: wool
#> -----------------------------
#> diff lwr upr p adj
#> B-A -5.78 -11.76 0.21 0.06
#>
#> Cell Means
#> ------------------------------------
#> diff lwr upr p adj
#> M:A-L:A -20.56 -35.86 -5.25 0.00
#> H:A-L:A -20.00 -35.31 -4.69 0.00
#> L:B-L:A -16.33 -31.64 -1.03 0.03
#> M:B-L:A -15.78 -31.08 -0.47 0.04
#> H:B-L:A -25.78 -41.08 -10.47 0.00
#> H:A-M:A 0.56 -14.75 15.86 1.00
#> L:B-M:A 4.22 -11.08 19.53 0.96
#> M:B-M:A 4.78 -10.53 20.08 0.94
#> H:B-M:A -5.22 -20.53 10.08 0.91
#> L:B-H:A 3.67 -11.64 18.97 0.98
#> M:B-H:A 4.22 -11.08 19.53 0.96
#> H:B-H:A -5.78 -21.08 9.53 0.87
#> M:B-L:B 0.56 -14.75 15.86 1.00
#> H:B-L:B -9.44 -24.75 5.86 0.46
#> H:B-M:B -10.00 -25.31 5.31 0.39
#>
#>
#> RESIDUALS
#>
#> Fitted Values, Residuals, Standardized Residuals
#> [sorted by Standardized Residuals, ignoring + or - sign]
#> [res_rows = 20, out of 54 cases (rows) of data, or res_rows="all"]
#> ------------------------------------------------
#> tension wool breaks fitted residual z-resid
#> 5 L A 70.00 44.56 25.44 2.47
#> 9 L A 67.00 44.56 22.44 2.18
#> 4 L A 25.00 44.56 -19.56 -1.90
#> 8 L A 26.00 44.56 -18.56 -1.80
#> 1 L A 26.00 44.56 -18.56 -1.80
#> 24 H A 43.00 24.56 18.44 1.79
#> 36 L B 44.00 28.22 15.78 1.53
#> 2 L A 30.00 44.56 -14.56 -1.41
#> 23 H A 10.00 24.56 -14.56 -1.41
#> 29 L B 14.00 28.22 -14.22 -1.38
#> 37 M B 42.00 28.78 13.22 1.28
#> 34 L B 41.00 28.22 12.78 1.24
#> 40 M B 16.00 28.78 -12.78 -1.24
#> 14 M A 12.00 24.00 -12.00 -1.16
#> 18 M A 36.00 24.00 12.00 1.16
#> 19 H A 36.00 24.56 11.44 1.11
#> 16 M A 35.00 24.00 11.00 1.07
#> 41 M B 39.00 28.78 10.22 0.99
#> 44 M B 39.00 28.78 10.22 0.99
#> 39 M B 19.00 28.78 -9.78 -0.95
For a one-way ANOVA, just include one independent variable. A
randomized block design is also available.
Proportions
more
examples of analyzing proportions
The analysis of proportions is of two primary types.
- Focus on a single value of a categorical variable, termed a
“success” when it occurs, for one or more samples of data. Analyze the
resulting proportion of occurrence for a single sample, or for a test of
homogeneity, compare proportions of successes across distinct
data samples for a single variable.
- Compare the obtained proportions across the values of one or more
categorical variables for a single sample. Applied to a single variable,
the analysis is a goodness-of-fit. Or, evaluate a potential
relationship between two categorical variables, a test of
independence.
Here, just analyze the \(\chi^2\)
test of independence, which applies to two categorical variables. The
first categorical variable listed in this example is the value of the
parameter variable, the first parameter in the function
definition, so does not need the parameter name. The second categorical
variable listed must include the parameter name by.
The question for the analysis is if the observed frequencies of
Jacket thickness and Bike ownership sufficiently
differ from the frequencies expected by the null hypothesis that we
conclude the variables are related.
d <- Read("Jackets")
#>
#> >>> Suggestions
#> Recommended binary format for data files: feather
#> Create with Write(d, "your_file", format="feather")
#> More details about your data, Enter: details() for d, or details(name)
#>
#> Data Types
#> ------------------------------------------------------------
#> character: Non-numeric data values
#> ------------------------------------------------------------
#>
#> Variable Missing Unique
#> Name Type Values Values Values First and last values
#> ------------------------------------------------------------------------------------------
#> 1 Bike character 1025 0 2 BMW Honda Honda ... Honda Honda BMW
#> 2 Jacket character 1025 0 3 Lite Lite Lite ... Lite Med Lite
#> ------------------------------------------------------------------------------------------
Prop_test(Jacket, by=Bike)
#> variable: Jacket
#> by: Bike
#>
#> <<< Pearson's Chi-squared test
#>
#> --- Description
#>
#> Jacket
#> Bike Lite Med Thick Sum
#> BMW 89 135 194 418
#> Honda 283 207 117 607
#> Sum 372 342 311 1025
#>
#> Cramer's V: 0.319
#>
#> Row Col Observed Expected Residual Stnd Res
#> 1 1 89 151.703 -62.703 -8.288
#> 1 2 135 139.469 -4.469 -0.602
#> 1 3 194 126.827 67.173 9.287
#> 2 1 283 220.297 62.703 8.288
#> 2 2 207 202.531 4.469 0.602
#> 2 3 117 184.173 -67.173 -9.287
#>
#> --- Inference
#>
#> Chi-square statistic: 104.083
#> Degrees of freedom: 2
#> Hypothesis test of equal population proportions: p-value = 0.000
Regression Analysis
more
examples of regression and logistic regression
The full output is extensive: Summary of the analysis, estimated
model, fit indices, ANOVA, correlation matrix, collinearity analysis,
best subset regression, residuals and influence statistics, and
prediction intervals. The motivation is to provide virtually all of the
information needed for a proper regression analysis.
d <- Read("Employee", quiet=TRUE)
reg(Salary ~ Years + Pre)
#> >>> Suggestion
#> # Create an R markdown file for interpretative output with Rmd = "file_name"
#> reg(Salary ~ Years + Pre, Rmd="eg")
#>
#>
#> BACKGROUND
#>
#> Data Frame: d
#>
#> Response Variable: Salary
#> Predictor Variable 1: Years
#> Predictor Variable 2: Pre
#>
#> Number of cases (rows) of data: 37
#> Number of cases retained for analysis: 36
#>
#>
#> BASIC ANALYSIS
#>
#> Estimate Std Err t-value p-value Lower 95% Upper 95%
#> (Intercept) 44140.971 13666.115 3.230 0.003 16337.052 71944.891
#> Years 3251.408 347.529 9.356 0.000 2544.355 3958.462
#> Pre -18.265 167.652 -0.109 0.914 -359.355 322.825
#>
#> Standard deviation of Salary: 21,822.372
#>
#> Standard deviation of residuals: 11,753.478 for df=33
#> 95% range of residuals: 47,825.260 = 2 * (2.035 * 11,753.478)
#>
#> R-squared: 0.726 Adjusted R-squared: 0.710 PRESS R-squared: 0.659
#>
#> Null hypothesis of all 0 population slope coefficients:
#> F-statistic: 43.827 df: 2 and 33 p-value: 0.000
#>
#> -- Analysis of Variance
#>
#> df Sum Sq Mean Sq F-value p-value
#> Years 1 12107157290.292 12107157290.292 87.641 0.000
#> Pre 1 1639658.444 1639658.444 0.012 0.914
#>
#> Model 2 12108796948.736 6054398474.368 43.827 0.000
#> Residuals 33 4558759843.773 138144237.690
#> Salary 35 16667556792.508 476215908.357
#>
#>
#> K-FOLD CROSS-VALIDATION
#>
#>
#> RELATIONS AMONG THE VARIABLES
#>
#> Salary Years Pre
#> Salary 1.00 0.85 0.03
#> Years 0.85 1.00 0.05
#> Pre 0.03 0.05 1.00
#>
#> Tolerance VIF
#> Years 0.998 1.002
#> Pre 0.998 1.002
#>
#> Years Pre R2adj X's
#> 1 0 0.718 1
#> 1 1 0.710 2
#> 0 1 -0.028 1
#>
#> [based on Thomas Lumley's leaps function from the leaps package]
#>
#>
#> RESIDUALS AND INFLUENCE
#>
#> -- Data, Fitted, Residual, Studentized Residual, Dffits, Cook's Distance
#> [sorted by Cook's Distance]
#> [n_res_rows = 20, out of 36 rows of data, or do n_res_rows="all"]
#> -----------------------------------------------------------------------------------------
#> Years Pre Salary fitted resid rstdnt dffits cooks
#> Correll, Trevon 21 97 134419.230 110648.843 23770.387 2.424 1.217 0.430
#> James, Leslie 18 70 122563.380 101387.773 21175.607 1.998 0.714 0.156
#> Capelle, Adam 24 83 108138.430 120658.778 -12520.348 -1.211 -0.634 0.132
#> Hoang, Binh 15 96 111074.860 91158.659 19916.201 1.860 0.649 0.131
#> Korhalkar, Jessica 2 74 72502.500 49292.181 23210.319 2.171 0.638 0.122
#> Billing, Susan 4 91 72675.260 55484.493 17190.767 1.561 0.472 0.071
#> Singh, Niral 2 59 61055.440 49566.155 11489.285 1.064 0.452 0.068
#> Skrotzki, Sara 18 63 91352.330 101515.627 -10163.297 -0.937 -0.397 0.053
#> Saechao, Suzanne 8 98 55545.250 68362.271 -12817.021 -1.157 -0.390 0.050
#> Kralik, Laura 10 74 92681.190 75303.447 17377.743 1.535 0.287 0.026
#> Anastasiou, Crystal 2 59 56508.320 49566.155 6942.165 0.636 0.270 0.025
#> Langston, Matthew 5 94 49188.960 58681.106 -9492.146 -0.844 -0.268 0.024
#> Afshari, Anbar 6 100 69441.930 61822.925 7619.005 0.689 0.264 0.024
#> Cassinelli, Anastis 10 80 57562.360 75193.857 -17631.497 -1.554 -0.265 0.022
#> Osterman, Pascal 5 69 49704.790 59137.730 -9432.940 -0.826 -0.216 0.016
#> Bellingar, Samantha 10 67 66337.830 75431.301 -9093.471 -0.793 -0.198 0.013
#> LaRoe, Maria 10 80 61961.290 75193.857 -13232.567 -1.148 -0.195 0.013
#> Ritchie, Darnell 7 82 53788.260 65403.102 -11614.842 -1.006 -0.190 0.012
#> Sheppard, Cory 14 66 95027.550 88455.199 6572.351 0.579 0.176 0.011
#> Downs, Deborah 7 90 57139.900 65256.982 -8117.082 -0.706 -0.174 0.010
#>
#>
#> PREDICTION ERROR
#>
#> -- Data, Predicted, Standard Error of Prediction, 95% Prediction Intervals
#> [sorted by lower bound of prediction interval]
#> [to see all intervals add n_pred_rows="all"]
#> ----------------------------------------------
#>
#> Years Pre Salary pred s_pred pi.lwr pi.upr width
#> Hamide, Bita 1 83 51036.850 45876.388 12290.483 20871.211 70881.564 50010.352
#> Singh, Niral 2 59 61055.440 49566.155 12619.291 23892.014 75240.296 51348.281
#> Anastasiou, Crystal 2 59 56508.320 49566.155 12619.291 23892.014 75240.296 51348.281
#> ...
#> Link, Thomas 10 83 66312.890 75139.062 11933.518 50860.137 99417.987 48557.849
#> LaRoe, Maria 10 80 61961.290 75193.857 11918.048 50946.405 99441.308 48494.903
#> Cassinelli, Anastis 10 80 57562.360 75193.857 11918.048 50946.405 99441.308 48494.903
#> ...
#> Correll, Trevon 21 97 134419.230 110648.843 12881.876 84440.470 136857.217 52416.747
#> Capelle, Adam 24 83 108138.430 120658.778 12955.608 94300.394 147017.161 52716.767
#>
#> ----------------------------------
#> Plot 1: Distribution of Residuals
#> Plot 2: Residuals vs Fitted Values
#> ----------------------------------
As with several other lessR functions, save the
output to an object with the name of your choosing, such as
r, and then reference desired pieces of the output. View
the names of those pieces from the manual, here obtained with
?reg, or use the R names function, such as in the following
example.
r <- reg(Salary ~ Years + Pre)
names(r)
#> [1] "out_suggest" "call" "formula" "vars"
#> [5] "out_title_bck" "out_background" "out_title_basic" "out_estimates"
#> [9] "out_fit" "out_anova" "out_title_mod" "out_mod"
#> [13] "out_mdls" "out_title_kfold" "out_kfold" "out_title_rel"
#> [17] "out_cor" "out_collinear" "out_subsets" "out_title_res"
#> [21] "out_residuals" "out_title_pred" "out_predict" "out_ref"
#> [25] "out_Rmd" "out_Word" "out_pdf" "out_odt"
#> [29] "out_rtf" "out_plots" "n.vars" "n.obs"
#> [33] "n.keep" "coefficients" "sterrs" "tvalues"
#> [37] "pvalues" "cilb" "ciub" "anova_model"
#> [41] "anova_residual" "anova_total" "se" "resid_range"
#> [45] "Rsq" "Rsqadj" "PRESS" "RsqPRESS"
#> [49] "m_se" "m_MSE" "m_Rsq" "cor"
#> [53] "tolerances" "vif" "resid.max" "pred_min_max"
#> [57] "residuals" "fitted" "cooks.distance" "model"
#> [61] "terms"
View any piece of output with the name of the output file, a dollar
sign, and the specific name of that piece. Here, examine the fit
indices.
r$out_fit
#> Standard deviation of Salary: 21,822.372
#>
#> Standard deviation of residuals: 11,753.478 for df=33
#> 95% range of residuals: 47,825.260 = 2 * (2.035 * 11,753.478)
#>
#> R-squared: 0.726 Adjusted R-squared: 0.710 PRESS R-squared: 0.659
#>
#> Null hypothesis of all 0 population slope coefficients:
#> F-statistic: 43.827 df: 2 and 33 p-value: 0.000
These expressions could also be included in a markdown document that
systematically reviews each desired piece of the output.
Time Series and Forecasting
more
examples of run charts, time series charts, and forecasting
The time series plot, plotting the values of a variable cross time,
is a special case of a scatterplot, potentially with the points of size
0 with adjacent points connected by a line segment. Indicate a time
series by specifying the x-variable, the first variable
listed, as a variable of type Date. Unlike Base R
functions, Plot() automatically converts to
Date data values as dates specified in a digital format,
such as 18/8/2024 or related formats plus examples such as
2024 Q3 or 2024 Aug. Otherwise, explicitly use
the R function as.Date() to convert to this format before
calling Plot() or pass the date format directly with the
ts_format parameter.
Plot() implements time series forecasting based on trend
and seasonality with either exponential smoothing or regression
analysis, including the accompanying visualization. Time series
parameters include:
ts_method: Set at "es" for exponential
smoothing, the default, or "lm" for linear model
regression.ts_unit: The time unit, either as the natural occurring
interval between dates in the data, the default, or aggregated to a
wider time interval.ts_ahead: The number of time units to forecast into the
futurets_agg: If aggregating the time unit, aggregate as the
"sum", the default, or as the "mean".ts_PIlevel: The confidence level of the prediction
intervals, with 0.95 the default.ts_format: Provides a specific format for the date
variable if not detected correctly by default.ts_seasons: Set to FALSE to turn off
seasonality in the estimated model.ts_trend: Set to FALSE to turn off trend
in the estimated model.ts_type: Applies to exponential smoothing to specify
additive or multiplicative seasonality, with additive the default.
In this StockPrice data file, the date conversion as
already been done.
d <- Read("StockPrice")
#>
#> >>> Suggestions
#> Recommended binary format for data files: feather
#> Create with Write(d, "your_file", format="feather")
#> More details about your data, Enter: details() for d, or details(name)
#>
#> Data Types
#> ------------------------------------------------------------
#> character: Non-numeric data values
#> Date: Date with year, month and day
#> double: Numeric data values with decimal digits
#> ------------------------------------------------------------
#>
#> Variable Missing Unique
#> Name Type Values Values Values First and last values
#> ------------------------------------------------------------------------------------------
#> 1 Month Date 1419 0 473 1985-01-01 ... 2024-05-01
#> 2 Company character 1419 0 3 Apple Apple ... Intel Intel
#> 3 Price double 1419 0 1400 0.100055 0.085392 ... 30.346739 30.555891
#> 4 Volume double 1419 0 1419 6366416000 ... 229147100
#> ------------------------------------------------------------------------------------------
head(d)
#> Month Company Price Volume
#> 1 1985-01-01 Apple 0.100055 6366416000
#> 2 1985-02-01 Apple 0.085392 4733388800
#> 3 1985-03-01 Apple 0.076335 4615587200
#> 4 1985-04-01 Apple 0.073316 2868028800
#> 5 1985-05-01 Apple 0.059947 4639129600
#> 6 1985-06-01 Apple 0.062103 5811388800
We have the date as Month, and also have variables
Company and stock Price.
d <- Read("StockPrice")
#>
#> >>> Suggestions
#> Recommended binary format for data files: feather
#> Create with Write(d, "your_file", format="feather")
#> More details about your data, Enter: details() for d, or details(name)
#>
#> Data Types
#> ------------------------------------------------------------
#> character: Non-numeric data values
#> Date: Date with year, month and day
#> double: Numeric data values with decimal digits
#> ------------------------------------------------------------
#>
#> Variable Missing Unique
#> Name Type Values Values Values First and last values
#> ------------------------------------------------------------------------------------------
#> 1 Month Date 1419 0 473 1985-01-01 ... 2024-05-01
#> 2 Company character 1419 0 3 Apple Apple ... Intel Intel
#> 3 Price double 1419 0 1400 0.100055 0.085392 ... 30.346739 30.555891
#> 4 Volume double 1419 0 1419 6366416000 ... 229147100
#> ------------------------------------------------------------------------------------------
Plot(Month, Price, filter=(Company=="Apple"), area_fill="on")
#>
#> filter: (Company == "Apple")
#> -----
#> Rows of data before filtering: 1419
#> Rows of data after filtering: 473
#>
#> >>> Suggestions or enter: style(suggest=FALSE)
#> Plot(Month, Price, ts_ahead=4) # exponential smoothing forecast 4 time units
#> Plot(Month, Price, ts_unit="years") # aggregate time by yearly sum
#> Plot(Month, Price, ts_unit="years", ts_agg="mean") # aggregate by yearly mean
#> Plot(Month, Price, filter=(Company == "Apple"), area_fill="on", size=0) # just line segments, no points
#> Plot(Month, Price, filter=(Company == "Apple"), area_fill="on", lwd=0) # just points, no line segments
#>
#>
With the by parameter, plot all three companies on the
same panel.
Plot(Month, Price, by=Company)
#>
#> >>> Suggestions or enter: style(suggest=FALSE)
#> Plot(Month, Price, ts_ahead=4) # exponential smoothing forecast 4 time units
#> Plot(Month, Price, ts_unit="years") # aggregate time by yearly sum
#> Plot(Month, Price, ts_unit="years", ts_agg="mean") # aggregate by yearly mean
#> Plot(Month, Price, by=Company, size=0) # just line segments, no points
#> Plot(Month, Price, by=Company, lwd=0) # just points, no line segments
#> Plot(Month, Price, by=Company, area_fill="on") # default color fill
#>
#>
Here, aggregate the mean by time, from months to quarters.
Plot(Month, Price, ts_unit="quarters", ts_agg="mean")
#> >>> Warning
#> The Date variable is not sorted in Increasing Order.
#>
#> For a data frame named d, enter:
#> d <- sort_by(d, Month)
#> Maybe you have a by variable with repeating Date values?
#> Enter ?sort_by for more information and examples.
#> [with functions from Ryan, Ulrich, Bennett, and Joy's xts package]
#>
#> >>> Suggestions or enter: style(suggest=FALSE)
#> Plot(Month, Price, ts_ahead=4) # exponential smoothing forecast 4 time units
#> Plot(Month, Price, ts_unit="quarters", ts_agg="mean", size=0) # just line segments, no points
#> Plot(Month, Price, ts_unit="quarters", ts_agg="mean", lwd=0) # just points, no line segments
#> Plot(Month, Price, ts_unit="quarters", ts_agg="mean", area_fill="on") # default color fill
#>
#>
Plot() implements exponential smoothing or linear
regression with seasonality forecasting with accompanying visualization.
Parameters include ts_ahead for the number of
ts_units to forecast into the future, and
ts_format to provide a specific format for the date
variable if not detected correctly by default. Parameter
ts_method defaults to es for exponential
smoothing, or set to lm for linear regression. Control
aspects of the exponential smoothing estimation and prediction
algorithms with parameters ts_level (alpha),
ts_trend (beta), ts_seasons (gamma),
ts_type for additive or multiplicative seasonality, and
ts_PIlevel for the level of the prediction intervals.
To forecast Apple’s stock price, focus here on the last several years
of the data, beginning with Row 400 through Row 473, the last row of
data for apple. In this example, forecast ahead 24 months.
d <- d[400:473,]
Plot(Month, Price, ts_unit="months", ts_agg="mean", ts_ahead=24)
#> [with functions from Ryan, Ulrich, Bennett, and Joy's xts package]
#>
#> >>> Suggestions or enter: style(suggest=FALSE)
#> Plot(Month, Price, ts_ahead=4, ts_seasons=FALSE) # turn off exponential smoothing seasonal effect
#> Plot(Month, Price, ts_unit="months", ts_agg="mean", ts_ahead=24, size=0) # just line segments, no points
#> Plot(Month, Price, ts_unit="months", ts_agg="mean", ts_ahead=24, lwd=0) # just points, no line segments
#> Plot(Month, Price, ts_unit="months", ts_agg="mean", ts_ahead=24, area_fill="on") # default color fill
#>
#>
#>
#> Mean squared error of fit to data: 131.41612
#>
#> Coefficients for Linear Trend and Seasonality
#> b0: 180.3470 b1: 1.0775
#> s1: 3.3283 s2: 8.7171 s3: 3.5309 s4: -7.0631 s5: 2.6683 s6: 8.6831
#> s7: 2.9660 s8: -0.1221 s9: -5.2179 s10: -1.8843 s11: 0.4437 s12: 2.0530
#>
#>
#> Smoothing Parameters
#> alpha: 0.800 beta: 0.001 gamma: 1.000
#>
#> Month predicted upper lower width
#> 1 Jun 2024 184.7528 162.8443 206.6612 43.81691
#> 2 Jul 2024 191.2191 163.1582 219.2801 56.12189
#> 3 Aug 2024 187.1104 154.0147 220.2061 66.19145
#> 4 Sep 2024 177.5939 140.1277 215.0600 74.93229
#> 5 Oct 2024 188.4028 147.0195 229.7860 82.76647
#> 6 Nov 2024 195.4951 150.5294 240.4607 89.93126
#> 7 Dec 2024 190.8555 142.5676 239.1433 96.57575
#> 8 Jan 2025 188.8448 137.4444 240.2453 102.80090
#> 9 Feb 2025 184.8265 130.4871 239.1659 108.67880
#> 10 Mar 2025 189.2376 132.1061 246.3691 114.26304
#> 11 Apr 2025 192.6431 132.8457 252.4405 119.59480
#> 12 May 2025 195.3299 132.9767 257.6831 124.70644
#> 13 Jun 2025 197.6827 131.5386 263.8267 132.28817
#> 14 Jul 2025 204.1490 135.6786 272.6194 136.94074
#> 15 Aug 2025 200.0403 129.3167 270.7638 141.44712
#> 16 Sep 2025 190.5237 117.6133 263.4342 145.82087
#> 17 Oct 2025 201.3327 126.2959 276.3694 150.07358
#> 18 Nov 2025 208.4249 131.3173 285.5326 154.21529
#> 19 Dec 2025 203.7853 124.6580 282.9127 158.25470
#> 20 Jan 2026 201.7747 120.6750 282.8745 162.19947
#> 21 Feb 2026 197.7564 114.7282 280.7845 166.05634
#> 22 Mar 2026 202.1675 117.2518 287.0831 169.83131
#> 23 Apr 2026 205.5730 118.8081 292.3378 173.52972
#> 24 May 2026 208.2598 119.6816 296.8380 177.15638
Factor Analysis
more
examples of exploratory and confirmatory factor analysis
Access the lessR data set called datMach4 for the
analysis of 351 people to the Mach IV scale. Read the optional variable
labels. Including the item contents as variable labels means that the
output of the confirmatory factor analysis contains the item content
grouped by factor.
d <- Read("Mach4", quiet=TRUE)
l <- Read("Mach4_lbl", var_labels=TRUE)
#>
#> >>> Suggestions
#> Recommended binary format for data files: feather
#> Create with Write(d, "your_file", format="feather")
#> More details about your data, Enter: details() for d, or details(name)
#>
#> Data Types
#> ------------------------------------------------------------
#> character: Non-numeric data values
#> ------------------------------------------------------------
#>
#> Variable Missing Unique
#> Name Type Values Values Values First and last values
#> ------------------------------------------------------------------------------------------
#> 1 label character 20 0 20 Never tell anyone the real reason you did something unless it is useful to do so ... Most people forget more easily the death of a parent than the loss of their property
#> ------------------------------------------------------------------------------------------
Calculate the correlations and store in here in mycor, a
data structure that contains the computed correlation matrix with the
name R. Extract R from mycor.
The correlation matrix for analysis is named R. The item (observed
variable) correlation matrix is the numerical input into the
confirmatory factor analysis.
Here, do the default two-factor solution with "promax"
rotation. The default correlation matrix is mycor. The
abbreviation for corEFA() is efa().
efa(R, n_factors=4)
#> EXPLORATORY FACTOR ANALYSIS
#>
#> Loadings (except -0.2 to 0.2)
#> -------------------------------------
#> Factor1 Factor2 Factor3 Factor4
#> m06 0.828 -0.290
#> m07 0.712
#> m10 0.539
#> m03 0.422 0.318
#> m09 0.323
#> m05 0.649
#> m18 0.555 0.253
#> m13 0.543 0.226
#> m01 0.490
#> m12 0.434 -0.230
#> m08 0.236 -0.202
#> m14 0.402 0.991 -0.401
#> m04 0.426
#> m20 0.237 -0.282
#> m17 0.267
#> m19
#> m11 -0.299 0.309 -0.609
#> m16 0.274 -0.455
#> m02 -0.319
#> m15 -0.207 0.203 -0.214
#>
#> Sum of Squares
#> ------------------------------------------------
#> Factor1 Factor2 Factor3 Factor4
#> SS loadings 1.933 2.038 1.825 1.099
#> Proportion Var 0.097 0.102 0.091 0.055
#> Cumulative Var 0.097 0.199 0.290 0.345
#>
#> CONFIRMATORY FACTOR ANALYSIS CODE
#>
#> MeasModel <-
#> " F1 =~ m01 + m02 + m03 + m04 + m05
#> F2 =~ m06 + m07 + m08 + m09 + m10 + m11
#> F3 =~ m12 + m13 + m14 + m15
#> F4 =~ m17 + m18 + m19 + m20
#> "
#>
#> fit <- lessR::cfa(MeasModel)
#>
#> library(lavaan)
#> fit <- lavaan::cfa(MeasModel, data=d)
#> summary(fit, fit.measures=TRUE, standardized=TRUE)
#>
#> Deletion threshold: min_loading = 0.2
#> Deleted items: m16
The confirmatory factor analysis is of multiple-indicator measurement
scales, that is, each item (observed variable) is assigned to only one
factor. Solution method is centroid factor analysis.
Specify the measurement model for the analysis in Lavaan notation.
Define four factors: Deceit, Trust, Cynicism, and Flattery.
MeasModel <-
"
Deceit =~ m07 + m06 + m10 + m09
Trust =~ m12 + m05 + m13 + m01
Cynicism =~ m11 + m16 + m04
Flattery =~ m15 + m02
"
Pivot Tables
more
examples of pivot tables
Aggregate with pivot(). Any function that processes a
single vector of data, such as a column of data values for a variable in
a data frame, and outputs a single computed value, the statistic, can be
passed to pivot(). Functions can be user-defined or
built-in.
Here, compute the mean and standard deviation of each company in the
StockPrice data set download it with lessR.
d <- Read("StockPrice", quiet=TRUE)
pivot(d, c(mean, sd), Price, by=Company)
#> Company Price_n Price_na Price_mean Price_sd
#> 1 Apple 473 0 23.157 46.248
#> 2 IBM 473 0 60.010 43.547
#> 3 Intel 473 0 16.725 14.689
Interpret this call to pivot() as
- for data set d
- compute the mean and standard deviation
- of variable Price
- for each Company
Select any two of the three possibilities for multiple parameter
values: Multiple compute functions, multiple variables over which to
compute, and multiple categorical variables by which to define groups
for aggregation.
Color Scales
more
examples of color scales
Generate color scales with getColors(). The default
output of getColors() is a color spectrum of 12
hcl colors presented in the order in which they are
assigned to discrete levels of a categorical variable. For clarity in
the following function call, the default value of the pal
or palette parameter is explicitly set to its name,
"hues".
#>
#> h hex r g b
#> -------------------------------
#> 1 240 #4398D0 67 152 208
#> 2 60 #B28B2A 178 139 42
#> 3 120 #5FA140 95 161 64
#> 4 0 #D57388 213 115 136
#> 5 275 #9A84D6 154 132 214
#> 6 180 #00A898 0 168 152
#> 7 30 #C97E5B 201 126 91
#> 8 90 #909711 144 151 17
#> 9 210 #00A3BA 0 163 186
#> 10 330 #D26FAF 210 111 175
#> 11 150 #00A76F 0 167 111
#> 12 300 #BD76CB 189 118 203
lessR provides pre-defined sequential color scales
across the range of hues around the color wheel in 30 degree increments:
"reds", "rusts", "browns",
"olives", "greens", "emeralds",
"turqoises", "aquas", "blues",
"purples", "biolets", "magentas",
and "grays".
#>
#> h hex r g b
#> -------------------------------
#> 1 240 #CCECFFFF 204 236 255
#> 2 240 #B4D8FCFF 180 216 252
#> 3 240 #9DC5EBFF 157 197 235
#> 4 240 #84B2DBFF 132 178 219
#> 5 240 #6B9FCCFF 107 159 204
#> 6 240 #4F8DBCFF 79 141 188
#> 7 240 #2D7CAEFF 45 124 174
#> 8 240 #006BA0FF 0 107 160
#> 9 240 #005B93FF 0 91 147
#> 10 240 #004C8AFF 0 76 138
#> 11 240 #004087FF 0 64 135
#> 12 240 #0040A9FF 0 64 169
To create a divergent color palette, specify beginning and an ending
color palettes, which provide values for the parameters pal
and end_pal, where pal abbreviates palette.
Here, generate colors from rust to blue.
getColors("rusts", "blues")
#>
#> color r g b
#> ----------------------
#> #70370FFF 112 55 15
#> #7D4A32FF 125 74 50
#> #8B5F4DFF 139 95 77
#> #997568FF 153 117 104
#> #A88E86FF 168 142 134
#> #B9ADAAFF 185 173 170
#> #AAB0B8FF 170 176 184
#> #8595A7FF 133 149 167
#> #658099FF 101 128 153
#> #466D8DFF 70 109 141
#> #1D5C83FF 29 92 131
#> #004D7AFF 0 77 122
