douconca 1.2.2
- New coef.dcca() and fitted.dcca() functions with predict.dcca()
adapted. The function coef() can give fourth-corner correlations and
regression coefficients.
- Patch release with extended test files and associated small
corrections, for example, SDS (standard deviation of predictors) was in
v1.2.1 a constant factor too large with the default of the argument
divideBySiteTotals (the regression weights and t-values were
correct).
douconca 1.2.1
- Patch release addressing check errors on several CRAN build
machines.
douconca 1.2.0
douconca 1.1.6
- An issue with collinear predictors in v1.1.5 has been resolved.
douconca 1.1.5
- The package can now do general dc-CA, instead of the vegan-based
version with equal site weights only. For users of the previous version,
the function dc_CA_vegan has been replaced by the more general function
dc_CA. The default gives the same analysis. By specifying the argument
divideBySiteTotals = FALSE
, obtain the original dc-CA
analysis with unequal site weights.
- The
plot_dcCA
function is now a method:
plot.
- General dc-CA required weighted redundancy analysis. For this, a new
function
wrda
has been added, with methods for print,
scores and anova.
- A
predict
function has been added.
- A dc-CA can be computed from community-weighted means (CWMs) with
trait and environment data with species and site weights. See the new
function
fCWM_SNC
. This is of interest, for example, to
make a dc-CA analysis reproducible when the abundance data cannot be
made public, and it may also allow to perform dcCA with intra-species
trait variation. The user needs to be able to compute meaningful CWMs in
this case and supply trait data that reflect the (species-weighted)
inter-trait covariance.
- Several functions are updated. In particular, there are corrections
to the anova function.
douconca 1.1.2
- The
scores.dccav
function is corrected concerning
intra-set correlations for traits and environmental variables.
- The plotting functions are updated to avoid ggplot2 warnings on
color and size.
- The fitted straight lines in the plots use the implicit weights
(they did already, but the help said they did not).