amadeus: Accessing and Analyzing Large-Scale Environmental Data

Functions are designed to facilitate access to and utility with large scale, publicly available environmental data in R. The package contains functions for downloading raw data files from web URLs (download_data()), processing the raw data files into clean spatial objects (process_covariates()), and extracting values from the spatial data objects at point and polygon locations (calc_covariates()). These functions call a series of source-specific functions which are tailored to each data sources/datasets particular URL structure, data format, and spatial/temporal resolution. The functions are tested, versioned, and open source and open access. For calc_sedc() method details, see Messier, Akita, and Serre (2012) <doi:10.1021/es203152a>.

Version: 1.0.7
Depends: R (≥ 4.1.0)
Imports: dplyr, sf, sftime, stats, terra, methods, data.table, httr, rvest, exactextractr, utils, stringi, testthat (≥ 3.0.0), parallelly, stars, future, future.apply, tidyr, rlang, nhdplusTools, archive, collapse, Rdpack
Suggests: covr, withr, knitr, rmarkdown, lwgeom, FNN, doRNG, devtools, stringr, tigris, spelling
Published: 2024-09-02
DOI: 10.32614/CRAN.package.amadeus
Author: Mitchell Manware ORCID iD [aut, ctb], Insang Song ORCID iD [aut, ctb], Eva Marques ORCID iD [aut, ctb], Mariana Alifa Kassien ORCID iD [aut, ctb], Kyle Messier ORCID iD [aut, cre], Spatiotemporal Exposures and Toxicology Group [cph]
Maintainer: Kyle Messier <kyle.messier at nih.gov>
BugReports: https://github.com/NIEHS/amadeus/issues
License: MIT + file LICENSE
URL: https://niehs.github.io/amadeus/
NeedsCompilation: no
Language: en-US
Materials: README
CRAN checks: amadeus results [issues need fixing before 2024-10-29]

Documentation:

Reference manual: amadeus.pdf
Vignettes: amadeus workflow (source, R code)

Downloads:

Package source: amadeus_1.0.7.tar.gz
Windows binaries: r-devel: amadeus_1.0.7.zip, r-release: amadeus_1.0.7.zip, r-oldrel: amadeus_1.0.7.zip
macOS binaries: r-release (arm64): amadeus_1.0.7.tgz, r-oldrel (arm64): amadeus_1.0.7.tgz, r-release (x86_64): amadeus_1.0.7.tgz, r-oldrel (x86_64): amadeus_1.0.7.tgz
Old sources: amadeus archive

Linking:

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