Provides two methods for automatic calculation of gene scores from gene count tables: the z-score method, which requires a table of samples being scored and a count table with control samples, and the geometric mean method, which does not rely on control samples. The mathematical methods implemented are described by Kim et al. (2018) <doi:10.1089/jir.2017.0127>.
Version: | 0.1.1 |
Published: | 2024-10-25 |
DOI: | 10.32614/CRAN.package.GeneScoreR |
Author: | Aris Syntakas [aut, cre] |
Maintainer: | Aris Syntakas <sejjsyn at ucl.ac.uk> |
License: | MIT + file LICENSE |
NeedsCompilation: | no |
CRAN checks: | GeneScoreR results |
Reference manual: | GeneScoreR.pdf |
Package source: | GeneScoreR_0.1.1.tar.gz |
Windows binaries: | r-devel: GeneScoreR_0.1.1.zip, r-release: not available, r-oldrel: GeneScoreR_0.1.1.zip |
macOS binaries: | r-release (arm64): GeneScoreR_0.1.1.tgz, r-oldrel (arm64): GeneScoreR_0.1.1.tgz, r-release (x86_64): GeneScoreR_0.1.1.tgz, r-oldrel (x86_64): GeneScoreR_0.1.1.tgz |
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