CohortSymmetry

CohortSymmetry 0.4.0

Renamed generateSequenceCohortSet() to sequenceCohort() and updated the associated argument names.
Removed movingAverageRestriction as a user-facing argument in sequenceCohort(). It is now set internally to the upper bound of combinationWindow.
sequenceCohort() now returns a cohort table instead of a CDM reference. Users should assign the returned cohort table to their CDM reference using cdm$cohort_name <- sequenceCohort(...).
Changed the default values of sequencePriorObservation and indexMarkerWashout in sequenceCohort() from 0 to 365 days. These changes introduce a minimum one-year prior observation requirement and a one-year washout period by default, which may affect cohort inclusion and subsequent sequence symmetry estimates
Replaced the categorical time interval argument (“days”, “months”, “year”) with a numeric days argument in summariseTemporalSymmetry() and plotTemporalSymmetry().

Updated compatibility with the latest version of visOmopResults.
Added support for the style argument in plotting and table functions.
Updated documentation, tests, and vignettes to reflect changes to the package interface.
Added GitHub Actions badges for test status and code coverage.
Corrected typos in the README.
Moved CDMConnector from Imports to Suggests to reduce required dependencies.
Replaced CDMConnector date difference functions with equivalent functions from clock.

Fixed an issue in tableSequenceRatio() where the incorrect confidence interval value was used.