Last updated on 2024-11-08 07:50:56 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| NicheBarcoding | 2 | 2 | 9 |
Current CRAN status: ERROR: 2, NOTE: 2, OK: 9
Version: 1.0
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘rJava’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [23s/24s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
30: tryCatch(withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error), error = handle_fatal, skip = function(e) { })
31: test_code(test = NULL, code = exprs, env = env, default_reporter = StopReporter$new())
32: source_file(path, env = env(env), desc = desc, error_call = error_call)
33: FUN(X[[i]], ...)
34: lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call)
35: doTryCatch(return(expr), name, parentenv, handler)
36: tryCatchOne(expr, names, parentenv, handlers[[1L]])
37: tryCatchList(expr, classes, parentenv, handlers)
38: tryCatch(code, testthat_abort_reporter = function(cnd) { cat(conditionMessage(cnd), "\n") NULL})
39: with_reporter(reporters$multi, lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call))
40: test_files_serial(test_dir = test_dir, test_package = test_package, test_paths = test_paths, load_helpers = load_helpers, reporter = reporter, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, desc = desc, load_package = load_package, error_call = error_call)
41: test_files(test_dir = path, test_paths = test_paths, test_package = package, reporter = reporter, load_helpers = load_helpers, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, load_package = load_package, parallel = parallel)
42: test_dir("testthat", package = package, reporter = reporter, ..., load_package = "installed")
43: test_check("NicheBarcoding")
An irrecoverable exception occurred. R is aborting now ...
Flavor: r-release-macos-arm64
Version: 1.0
Check: tests
Result: ERROR
Running 'testthat.R' [204s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(NicheBarcoding)
>
> test_check("NicheBarcoding")
Loading required namespace: rJava
Generating the pseudo present points ......
>>> 1/24 Lasiocampidae_Gastropacha_quercifolia
>>> 2/24 Lasiocampidae_Dendrolimus_punctatus
>>> 3/24 Lasiocampidae_Alompra_ferruginea
>>> 4/24 Lasiocampidae_Paralebeda_femorata
>>> 5/24 Lasiocampidae_Odonestis_pruni
>>> 6/24 Lasiocampidae_Dendrolimus_superans
>>> 7/24 Lasiocampidae_Gastropacha_populifolia
>>> 8/24 Lasiocampidae_Dendrolimus_tabulaeformis
>>> 9/24 Lasiocampidae_Trabala_vishnou
>>> 10/24 Lasiocampidae_Dendrolimus_kikuchii
>>> 11/24 Lasiocampidae_Euthrix_laeta
>>> 12/24 Lasiocampidae_Malacosoma_neustria
>>> 13/24 Lasiocampidae_Euthrix_isocyma
>>> 14/24 Lasiocampidae_Euthrix_inobtrusa
>>> 15/24 Lasiocampidae_Paralebeda_lucifuga
>>> 16/24 Lasiocampidae_Radhica_puana
>>> 17/24 Lasiocampidae_Micropacha_gejra
>>> 18/24 Lasiocampidae_Syrastrena_sumatrana
>>> 19/24 Lasiocampidae_Streblote_igniflua
>>> 20/24 Lasiocampidae_Kunugia_undans
>>> 21/24 Lasiocampidae_Odontocraspis_hasora
>>> 22/24 Lasiocampidae_Cosmotriche_inexperta
>>> 23/24 Lasiocampidae_Estigena_philippinensis
>>> 1/2 Lasiocampidae_Gastropacha_quercifolia
'nperm' >= set of all permutations: complete enumeration.
Set of permutations < 'minperm'. Generating entire set.
[ FAIL 1 | WARN 2 | SKIP 0 | PASS 49 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-NBSI2.R:42:3'): tests of different parameter combinations ──────
Error in `pseudo.present.points(prese.lonlat[, 3:5], 10, lon.mean, lat.mean,
en.vir, map = F)`: The location of Lasiocampidae_Trabala_vishnou must be re-confirmed!
Backtrace:
▆
1. └─NicheBarcoding::NBSI2(...) at test-NBSI2.R:42:3
2. └─NicheBarcoding::pseudo.present.points(...)
[ FAIL 1 | WARN 2 | SKIP 0 | PASS 49 ]
Error: Test failures
Execution halted
Flavor: r-release-windows-x86_64