CRAN Package Check Results for Package ulrb

Last updated on 2026-08-03 07:51:48 CEST.

Flavor	Version	T_install	T_check	T_total	Status
r-devel-linux-x86_64-debian-clang	0.1.8	5.48	448.25	453.73	ERROR
r-devel-linux-x86_64-debian-gcc	0.1.8	3.61	268.28	271.89	NOTE
r-devel-linux-x86_64-fedora-clang	0.1.8			398.36	OK
r-devel-linux-x86_64-fedora-gcc	0.1.8			260.41	OK
r-devel-windows-x86_64	0.1.8	9.00	370.00	379.00	ERROR
r-patched-linux-x86_64	0.1.8	5.88	409.37	415.25	OK
r-release-linux-x86_64	0.1.8	5.05	411.83	416.88	OK
r-release-macos-arm64	0.1.8	1.00	102.00	103.00	OK
r-release-macos-x86_64	0.1.8	4.00	612.00	616.00	OK
r-release-windows-x86_64	0.1.8	9.00	349.00	358.00	OK
r-oldrel-macos-arm64	0.1.8				OK
r-oldrel-macos-x86_64	0.1.8	3.00	270.00	273.00	OK
r-oldrel-windows-x86_64	0.1.8	11.00	512.00	523.00	OK

Check Details

Version: 0.1.8
Check: tests
Result: ERROR Running ‘testthat.R’ [160s/196s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(ulrb) > > test_check("ulrb") Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` If half the observations within a classification are below 0.5 Silhouette score, we consider that the clustering was 'Bad'. Check 'Evaluation' collumn for more details. Joining with `by = join_by(Sample, Level)` If half the observations within a classification are below 0.5 Silhouette score, we consider that the clustering was 'Bad'. Check 'Evaluation' collumn for more details. Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Automatic option set to TRUE, so classification vector was overwritten K= 2 based on Average Silhouette Score. Joining with `by = join_by(Sample, Level)` Automatic option set to TRUE, so classification vector was overwritten K= 9 based on Calinski-Harabasz. Joining with `by = join_by(Sample, Level)` Automatic option set to TRUE, so classification vector was overwritten K= 9 based on Calinski-Harabasz. Joining with `by = join_by(Sample, Level)` Automatic option set to TRUE, so classification vector was overwritten K= 5 based on Average Silhouette Score. Joining with `by = join_by(Sample, Level)` Automatic option set to TRUE, so classification vector was overwritten Joining with `by = join_by(Sample, Level)` Saving _problems/test-define_rb-264.R Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Ignoring unknown labels: * fill : "" Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Missing argument sample_names. This is a vector with the names of the samples, as in the data input Taxa_id assumes each column is a taxonomic unit. Taxa_id assumes each column is a taxonomic unit. [ FAIL 1 | WARN 235 | SKIP 0 | PASS 153 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-define_rb.R:263:3'): No warning, if there are no clusters with zero taxa ── Expected `define_rb(no_singles, check_singles = TRUE)` not to throw any warnings. Actually got a <rlang_warning> with message: There were 4 warnings in `mutate()`. The first warning was: i In argument: `pam_object = purrr::map(...)`. i In group 1: `Sample = "ERR2044665"`. Caused by warning in `structure()`: ! Replacing special names '.Names' is deprecated; use 'names' instead. i Run `dplyr::last_dplyr_warnings()` to see the 3 remaining warnings. [ FAIL 1 | WARN 235 | SKIP 0 | PASS 153 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.1.8
Check: for new files in some other directories
Result: NOTE Found the following files/directories: ‘~/tmp/scratch/Rtmp0NesrF’ ‘~/tmp/scratch/Rtmp0TzNkF’ ‘~/tmp/scratch/Rtmp0ZeHz2’ ‘~/tmp/scratch/Rtmp0hzoAd’ ‘~/tmp/scratch/Rtmp1MlBTE’ ‘~/tmp/scratch/Rtmp1li6ek’ ‘~/tmp/scratch/Rtmp2H51Sv’ ‘~/tmp/scratch/Rtmp2J93Pg’ ‘~/tmp/scratch/Rtmp2NUppa’ ‘~/tmp/scratch/Rtmp2t7PxV’ ‘~/tmp/scratch/Rtmp30ke23’ ‘~/tmp/scratch/Rtmp39OEO4’ ‘~/tmp/scratch/Rtmp3IZ3qG’ ‘~/tmp/scratch/Rtmp3csVPp’ ‘~/tmp/scratch/Rtmp4YWlj8’ ‘~/tmp/scratch/Rtmp4asPYl’ ‘~/tmp/scratch/Rtmp5mnLED’ ‘~/tmp/scratch/Rtmp5o7owU’ ‘~/tmp/scratch/Rtmp64ckcj’ ‘~/tmp/scratch/Rtmp65Ymz8’ ‘~/tmp/scratch/Rtmp6IIGSb’ ‘~/tmp/scratch/Rtmp6YpDQy’ ‘~/tmp/scratch/Rtmp7I50mL’ ‘~/tmp/scratch/Rtmp7QELjv’ ‘~/tmp/scratch/Rtmp7Vnn9H’ ‘~/tmp/scratch/Rtmp7W71XW’ ‘~/tmp/scratch/Rtmp7WpDjQ’ ‘~/tmp/scratch/Rtmp7vBBTy’ ‘~/tmp/scratch/Rtmp8G6A0M’ ‘~/tmp/scratch/Rtmp8erfde’ ‘~/tmp/scratch/Rtmp8h6T7e’ ‘~/tmp/scratch/Rtmp8omik2’ ‘~/tmp/scratch/Rtmp8pgQii’ ‘~/tmp/scratch/Rtmp9Lpn2B’ ‘~/tmp/scratch/Rtmp9MXW6y’ ‘~/tmp/scratch/Rtmp9ecLCf’ ‘~/tmp/scratch/Rtmp9fsjRh’ ‘~/tmp/scratch/RtmpA8bYVM’ ‘~/tmp/scratch/RtmpAHHKy9’ ‘~/tmp/scratch/RtmpASFGvE’ ‘~/tmp/scratch/RtmpAyGAwL’ ‘~/tmp/scratch/RtmpBE6Asd’ ‘~/tmp/scratch/RtmpBH6q8b’ ‘~/tmp/scratch/RtmpBKLasz’ ‘~/tmp/scratch/RtmpBg4LWo’ ‘~/tmp/scratch/RtmpD8V65W’ ‘~/tmp/scratch/RtmpDmacff’ ‘~/tmp/scratch/RtmpEFStBc’ ‘~/tmp/scratch/RtmpEcoCF6’ ‘~/tmp/scratch/RtmpFSDOsE’ ‘~/tmp/scratch/RtmpFY68dz’ ‘~/tmp/scratch/RtmpFtZIkq’ ‘~/tmp/scratch/RtmpFvwkca’ ‘~/tmp/scratch/RtmpGEiUoL’ ‘~/tmp/scratch/RtmpGavPA9’ ‘~/tmp/scratch/RtmpGbgB2m’ ‘~/tmp/scratch/RtmpGioyMo’ ‘~/tmp/scratch/RtmpHCh28g’ ‘~/tmp/scratch/RtmpHeXDPm’ ‘~/tmp/scratch/RtmpHeicuQ’ ‘~/tmp/scratch/RtmpHrDbag’ ‘~/tmp/scratch/RtmpI8xF1H’ ‘~/tmp/scratch/RtmpIPAMu4’ ‘~/tmp/scratch/RtmpIXmntA’ ‘~/tmp/scratch/RtmpIcjWY0’ ‘~/tmp/scratch/RtmpIeJRdz’ ‘~/tmp/scratch/RtmpIemaWs’ ‘~/tmp/scratch/RtmpIt36gy’ ‘~/tmp/scratch/RtmpIuZLu0’ ‘~/tmp/scratch/RtmpKM7FsJ’ ‘~/tmp/scratch/RtmpKR5dHv’ ‘~/tmp/scratch/RtmpKVlEw7’ ‘~/tmp/scratch/RtmpKbPmU2’ ‘~/tmp/scratch/RtmpKvXHMS’ ‘~/tmp/scratch/RtmpL7AeHp’ ‘~/tmp/scratch/RtmpLOTyUk’ ‘~/tmp/scratch/RtmpLfvV56’ ‘~/tmp/scratch/RtmpMPQYOE’ ‘~/tmp/scratch/RtmpMe5n67’ ‘~/tmp/scratch/RtmpN1Ftoj’ ‘~/tmp/scratch/RtmpNRT8f1’ ‘~/tmp/scratch/RtmpPle0lA’ ‘~/tmp/scratch/RtmpQW50wA’ ‘~/tmp/scratch/RtmpQZHIoF’ ‘~/tmp/scratch/RtmpRKvUK2’ ‘~/tmp/scratch/RtmpRhzADE’ ‘~/tmp/scratch/RtmpRmQeAF’ ‘~/tmp/scratch/RtmpRrmcYn’ ‘~/tmp/scratch/RtmpRx3bZD’ ‘~/tmp/scratch/RtmpRytmYA’ ‘~/tmp/scratch/RtmpSGbpeC’ ‘~/tmp/scratch/RtmpTN6Bxo’ ‘~/tmp/scratch/RtmpTOa7Dl’ ‘~/tmp/scratch/RtmpTOjFbG’ ‘~/tmp/scratch/RtmpTQ7hTG’ ‘~/tmp/scratch/RtmpTwKrO5’ ‘~/tmp/scratch/RtmpUIyBVK’ ‘~/tmp/scratch/RtmpUJ2iqR’ ‘~/tmp/scratch/RtmpUTYMsK’ ‘~/tmp/scratch/RtmpUlTxfH’ ‘~/tmp/scratch/RtmpUyuotj’ ‘~/tmp/scratch/RtmpVL1GF5’ ‘~/tmp/scratch/RtmpVsRYyI’ ‘~/tmp/scratch/RtmpWeOV0K’ ‘~/tmp/scratch/RtmpWmBFsS’ ‘~/tmp/scratch/RtmpWmnFbR’ ‘~/tmp/scratch/RtmpWnaBGM’ ‘~/tmp/scratch/RtmpWuNuBw’ ‘~/tmp/scratch/RtmpXbzt0i’ ‘~/tmp/scratch/RtmpXiOiCS’ ‘~/tmp/scratch/RtmpY7Io5M’ ‘~/tmp/scratch/RtmpZBrJgI’ ‘~/tmp/scratch/RtmpZtm7nq’ ‘~/tmp/scratch/RtmpaBQvPO’ ‘~/tmp/scratch/RtmpaVcG7d’ ‘~/tmp/scratch/RtmpahdVH4’ ‘~/tmp/scratch/RtmpbDVvAs’ ‘~/tmp/scratch/RtmpbJYxmU’ ‘~/tmp/scratch/Rtmpbdvotn’ ‘~/tmp/scratch/Rtmpc5yAAa’ ‘~/tmp/scratch/RtmpcCbt1n’ ‘~/tmp/scratch/RtmpcyIhlY’ ‘~/tmp/scratch/Rtmpdu3O4F’ ‘~/tmp/scratch/Rtmpe2Wfk0’ ‘~/tmp/scratch/RtmpeH7kbG’ ‘~/tmp/scratch/RtmpeeLAXx’ ‘~/tmp/scratch/RtmpesVLDt’ ‘~/tmp/scratch/RtmpetABR7’ ‘~/tmp/scratch/RtmpfQTZw1’ ‘~/tmp/scratch/RtmpfadF2n’ ‘~/tmp/scratch/RtmpgHPvUH’ ‘~/tmp/scratch/RtmpgLKLHD’ ‘~/tmp/scratch/RtmpgqdbEF’ ‘~/tmp/scratch/Rtmph5OIA5’ ‘~/tmp/scratch/RtmphA5Ylj’ ‘~/tmp/scratch/RtmphJR2uT’ ‘~/tmp/scratch/RtmphKaHlJ’ ‘~/tmp/scratch/RtmphfGSQg’ ‘~/tmp/scratch/RtmpiBOTTt’ ‘~/tmp/scratch/RtmpiHsLzf’ ‘~/tmp/scratch/RtmpigHPqT’ ‘~/tmp/scratch/Rtmpk3kMz0’ ‘~/tmp/scratch/RtmpkPIvlU’ ‘~/tmp/scratch/RtmpkV44BQ’ ‘~/tmp/scratch/RtmpkjoVRJ’ ‘~/tmp/scratch/RtmplSsS4x’ ‘~/tmp/scratch/Rtmplv7rPV’ ‘~/tmp/scratch/RtmpmA1LF0’ ‘~/tmp/scratch/RtmpmkmTU7’ ‘~/tmp/scratch/RtmpnWe8Oa’ ‘~/tmp/scratch/Rtmpnm0yGU’ ‘~/tmp/scratch/RtmpoFEFNu’ ‘~/tmp/scratch/RtmpoyfhbW’ ‘~/tmp/scratch/Rtmpp957OZ’ ‘~/tmp/scratch/RtmppNmspC’ ‘~/tmp/scratch/RtmppSA5AK’ ‘~/tmp/scratch/RtmppwrWI8’ ‘~/tmp/scratch/RtmpqocInl’ ‘~/tmp/scratch/RtmpreHf95’ ‘~/tmp/scratch/RtmprxPBmu’ ‘~/tmp/scratch/RtmptLGVYZ’ ‘~/tmp/scratch/RtmptQddWu’ ‘~/tmp/scratch/RtmpudFLmO’ ‘~/tmp/scratch/RtmpugfN5p’ ‘~/tmp/scratch/RtmpvXrGcg’ ‘~/tmp/scratch/RtmpwiRwNp’ ‘~/tmp/scratch/Rtmpwq9OU5’ ‘~/tmp/scratch/Rtmpx1c9Kl’ ‘~/tmp/scratch/RtmpxXs8nw’ ‘~/tmp/scratch/Rtmpxdam6y’ ‘~/tmp/scratch/RtmpxyifiS’ ‘~/tmp/scratch/Rtmpy7i5Ht’ ‘~/tmp/scratch/RtmpyI14ml’ ‘~/tmp/scratch/Rtmpyajbco’ ‘~/tmp/scratch/RtmpylTXrk’ ‘~/tmp/scratch/RtmpzGhhWE’ ‘~/tmp/scratch/RtmpzXUjiR’ ‘~/tmp/scratch/xvfb-run.0NHOLx’ ‘~/tmp/scratch/xvfb-run.1jFJ4J’ ‘~/tmp/scratch/xvfb-run.1oWIK5’ ‘~/tmp/scratch/xvfb-run.2KIu5k’ ‘~/tmp/scratch/xvfb-run.329bKg’ ‘~/tmp/scratch/xvfb-run.3Vkowd’ ‘~/tmp/scratch/xvfb-run.4AFxHK’ ‘~/tmp/scratch/xvfb-run.5msR0r’ ‘~/tmp/scratch/xvfb-run.72FKIB’ ‘~/tmp/scratch/xvfb-run.8W48pl’ ‘~/tmp/scratch/xvfb-run.8pHg4G’ ‘~/tmp/scratch/xvfb-run.8q5rID’ ‘~/tmp/scratch/xvfb-run.9AeI34’ ‘~/tmp/scratch/xvfb-run.9xr3Tn’ ‘~/tmp/scratch/xvfb-run.Ax6sVS’ ‘~/tmp/scratch/xvfb-run.CeV4FG’ ‘~/tmp/scratch/xvfb-run.CiWM3U’ ‘~/tmp/scratch/xvfb-run.E41ia9’ ‘~/tmp/scratch/xvfb-run.E8ufWW’ ‘~/tmp/scratch/xvfb-run.EnX6mi’ ‘~/tmp/scratch/xvfb-run.HCFG0u’ ‘~/tmp/scratch/xvfb-run.HiHwEX’ ‘~/tmp/scratch/xvfb-run.HnY4Tn’ ‘~/tmp/scratch/xvfb-run.HptwYa’ ‘~/tmp/scratch/xvfb-run.I1A8Bf’ ‘~/tmp/scratch/xvfb-run.IyD4N3’ ‘~/tmp/scratch/xvfb-run.KX1ln7’ ‘~/tmp/scratch/xvfb-run.LS6ZBu’ ‘~/tmp/scratch/xvfb-run.MVDbij’ ‘~/tmp/scratch/xvfb-run.OgCFMc’ ‘~/tmp/scratch/xvfb-run.SGlhFX’ ‘~/tmp/scratch/xvfb-run.SzUaG1’ ‘~/tmp/scratch/xvfb-run.UVbwJC’ ‘~/tmp/scratch/xvfb-run.VtfMNl’ ‘~/tmp/scratch/xvfb-run.WgFKkU’ ‘~/tmp/scratch/xvfb-run.WxF85w’ ‘~/tmp/scratch/xvfb-run.YQRhZ9’ ‘~/tmp/scratch/xvfb-run.apPB5Q’ ‘~/tmp/scratch/xvfb-run.bD3yqf’ ‘~/tmp/scratch/xvfb-run.c6ZqM9’ ‘~/tmp/scratch/xvfb-run.d4eeNs’ ‘~/tmp/scratch/xvfb-run.dcJLTi’ ‘~/tmp/scratch/xvfb-run.dgIVpz’ ‘~/tmp/scratch/xvfb-run.elcoW7’ ‘~/tmp/scratch/xvfb-run.fVMGRm’ ‘~/tmp/scratch/xvfb-run.frcOkb’ ‘~/tmp/scratch/xvfb-run.gUZgEp’ ‘~/tmp/scratch/xvfb-run.gfhdnV’ ‘~/tmp/scratch/xvfb-run.hIMGt0’ ‘~/tmp/scratch/xvfb-run.hNryvZ’ ‘~/tmp/scratch/xvfb-run.i54bf7’ ‘~/tmp/scratch/xvfb-run.i65N4w’ ‘~/tmp/scratch/xvfb-run.iK9HB1’ ‘~/tmp/scratch/xvfb-run.iuAMwZ’ ‘~/tmp/scratch/xvfb-run.jqTyxZ’ ‘~/tmp/scratch/xvfb-run.mMDvCz’ ‘~/tmp/scratch/xvfb-run.mpAahy’ ‘~/tmp/scratch/xvfb-run.n79K26’ ‘~/tmp/scratch/xvfb-run.nBnEfv’ ‘~/tmp/scratch/xvfb-run.oBPjbJ’ ‘~/tmp/scratch/xvfb-run.oL29Wn’ ‘~/tmp/scratch/xvfb-run.pNc9KO’ ‘~/tmp/scratch/xvfb-run.pdVgFW’ ‘~/tmp/scratch/xvfb-run.ptG1ua’ ‘~/tmp/scratch/xvfb-run.pwQVpx’ ‘~/tmp/scratch/xvfb-run.rxJDEz’ ‘~/tmp/scratch/xvfb-run.seQ7gC’ ‘~/tmp/scratch/xvfb-run.sqaHWR’ ‘~/tmp/scratch/xvfb-run.tDLJOP’ ‘~/tmp/scratch/xvfb-run.tJufAc’ ‘~/tmp/scratch/xvfb-run.taSjQi’ ‘~/tmp/scratch/xvfb-run.uaOiGA’ ‘~/tmp/scratch/xvfb-run.vQqruA’ ‘~/tmp/scratch/xvfb-run.wSjkGX’ ‘~/tmp/scratch/xvfb-run.wfGrk3’ ‘~/tmp/scratch/xvfb-run.xgEEpO’ ‘~/tmp/scratch/xvfb-run.z1NoJi’ ‘~/tmp/scratch/xvfb-run.zNkEoX’ ‘~/tmp/scratch/xvfb-run.zskWfS’ Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.1.8
Check: tests
Result: ERROR Running 'testthat.R' [121s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(ulrb) > > test_check("ulrb") Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` If half the observations within a classification are below 0.5 Silhouette score, we consider that the clustering was 'Bad'. Check 'Evaluation' collumn for more details. Joining with `by = join_by(Sample, Level)` If half the observations within a classification are below 0.5 Silhouette score, we consider that the clustering was 'Bad'. Check 'Evaluation' collumn for more details. Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Automatic option set to TRUE, so classification vector was overwritten K= 2 based on Average Silhouette Score. Joining with `by = join_by(Sample, Level)` Automatic option set to TRUE, so classification vector was overwritten K= 9 based on Calinski-Harabasz. Joining with `by = join_by(Sample, Level)` Automatic option set to TRUE, so classification vector was overwritten K= 9 based on Calinski-Harabasz. Joining with `by = join_by(Sample, Level)` Automatic option set to TRUE, so classification vector was overwritten K= 5 based on Average Silhouette Score. Joining with `by = join_by(Sample, Level)` Automatic option set to TRUE, so classification vector was overwritten Joining with `by = join_by(Sample, Level)` Saving _problems/test-define_rb-264.R Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Ignoring unknown labels: * fill : "" Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Joining with `by = join_by(Sample, Level)` Missing argument sample_names. This is a vector with the names of the samples, as in the data input Taxa_id assumes each column is a taxonomic unit. Taxa_id assumes each column is a taxonomic unit. [ FAIL 1 | WARN 235 | SKIP 0 | PASS 153 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-define_rb.R:263:3'): No warning, if there are no clusters with zero taxa ── Expected `define_rb(no_singles, check_singles = TRUE)` not to throw any warnings. Actually got a <rlang_warning> with message: There were 4 warnings in `mutate()`. The first warning was: i In argument: `pam_object = purrr::map(...)`. i In group 1: `Sample = "ERR2044665"`. Caused by warning in `structure()`: ! Replacing special names '.Names' is deprecated; use 'names' instead. i Run `dplyr::last_dplyr_warnings()` to see the 3 remaining warnings. [ FAIL 1 | WARN 235 | SKIP 0 | PASS 153 ] Error: ! Test failures. Execution halted Flavor: r-devel-windows-x86_64