CRAN Package Check Results for Maintainer Philip Waggoner <philip.waggoner at gmail.com>

CRAN Package Check Results for Maintainer ‘Philip Waggoner <philip.waggoner at gmail.com>’

Last updated on 2024-11-08 07:50:52 CET.

Package	ERROR	NOTE	OK
amerika		8	5
hdImpute			13
mlbstats		8	5
plotGMM		8	5
plotmm	1		12
purging		8	5

Package amerika

Current CRAN status: NOTE: 8, OK: 5

Version: 0.1.0
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package plotGMM

Current CRAN status: NOTE: 8, OK: 5

Version: 0.2.2
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package plotmm

Current CRAN status: ERROR: 1, OK: 12

Version: 0.1.1
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘Getting-Started.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-devel/plotmm.Rcheck/vign_test/plotmm/vignettes/Getting-Started_files/figure-html/unnamed-chunk-2-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 19299 bytes Input file size = 19401 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15737 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15737 Output IDAT size = 15737 bytes (3562 bytes decrease) Output file size = 15815 bytes (3586 bytes = 18.48% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/plotmm.Rcheck/vign_test/plotmm/vignettes/Getting-Started_files/figure-html/unnamed-chunk-3-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18757 bytes Input file size = 18859 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13403 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13403 Output IDAT size = 13403 bytes (5354 bytes decrease) Output file size = 13481 bytes (5378 bytes = 28.52% decrease) *** caught segfault *** address 0x1, cause 'memory not mapped' Traceback: 1: init.EM(x, nclass = 10, method = "em.EM") 2: eval(expr, envir) 3: eval(expr, envir) 4: withVisible(eval(expr, envir)) 5: withCallingHandlers(code, message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = invokeRestart("eval_error", cnd))}) 6: eval(call) 7: eval(call) 8: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers) 9: doWithOneRestart(return(expr), restart) 10: withOneRestart(expr, restarts[[1L]]) 11: withRestartList(expr, restarts[-nr]) 12: doWithOneRestart(return(expr), restart) 13: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]]) 14: withRestartList(expr, restarts[-nr]) 15: doWithOneRestart(return(expr), restart) 16: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]]) 17: withRestartList(expr, restarts) 18: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE, eval_error = function(cnd) { signalCondition(cnd) stop(cnd) }) 19: evaluate::evaluate(...) 20: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)) 21: in_dir(input_dir(), expr) 22: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))) 23: eng_r(options) 24: block_exec(params) 25: call_block(x) 26: process_group(group) 27: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) if (xfun::pkg_available("rlang", "1.0.0")) rlang::entrace(e)) 28: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) if (xfun::pkg_available("rlang", "1.0.0")) rlang::entrace(e)), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from lines ", loc) }, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc) 29: process_file(text, output) 30: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet) 31: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...) 32: vweave_rmarkdown(...) 33: engine$weave(file, quiet = quiet, encoding = enc) 34: doTryCatch(return(expr), name, parentenv, handler) 35: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 36: tryCatchList(expr, classes, parentenv, handlers) 37: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) } outputs <- c(outputs, output)}, error = function(e) { thisOK <<- FALSE fails <<- c(fails, file) message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))}) 38: tools::buildVignettes(dir = "/data/gannet/ripley/R/packages/tests-devel/plotmm.Rcheck/vign_test/plotmm", skip = TRUE, ser_elibs = "/tmp/RtmpmRVXf2/file36fe52413e8085.rds") An irrecoverable exception occurred. R is aborting now ... Flavor: r-devel-linux-x86_64-fedora-gcc

Package purging

Current CRAN status: NOTE: 8, OK: 5

Version: 1.0.0
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64