Last updated on 2025-01-30 07:50:16 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2025.1.21 | 3.02 | 97.40 | 100.42 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2025.1.21 | 2.34 | 70.38 | 72.72 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 2025.1.21 | 164.51 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 2025.1.21 | 170.50 | OK | |||
| r-devel-windows-x86_64 | 2025.1.21 | 4.00 | 573.00 | 577.00 | OK | |
| r-patched-linux-x86_64 | 2025.1.21 | 3.25 | 90.55 | 93.80 | OK | |
| r-release-linux-x86_64 | 2025.1.21 | 2.50 | 90.63 | 93.13 | OK | |
| r-release-macos-arm64 | 2025.1.21 | 69.00 | OK | |||
| r-release-macos-x86_64 | 2025.1.21 | 139.00 | OK | |||
| r-release-windows-x86_64 | 2025.1.21 | 6.00 | 139.00 | 145.00 | OK | |
| r-oldrel-macos-arm64 | 2024.9.20 | 74.00 | OK | |||
| r-oldrel-macos-x86_64 | 2024.9.20 | 127.00 | OK | |||
| r-oldrel-windows-x86_64 | 2025.1.21 | 5.00 | 688.00 | 693.00 | OK |
Version: 2025.1.21
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘v0-overview.Rmd’ using rmarkdown
--- finished re-building ‘v0-overview.Rmd’
--- re-building ‘v1-capture-first.Rmd’ using rmarkdown
--- finished re-building ‘v1-capture-first.Rmd’
--- re-building ‘v2-capture-all.Rmd’ using rmarkdown
--- finished re-building ‘v2-capture-all.Rmd’
--- re-building ‘v3-capture-melt.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/nc.Rcheck/vign_test/nc/vignettes/v3-capture-melt_files/figure-html/unnamed-chunk-3-1.png
960x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20950 bytes
Input file size = 21052 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17438
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17438
Output IDAT size = 17438 bytes (3512 bytes decrease)
Output file size = 17516 bytes (3536 bytes = 16.80% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/nc.Rcheck/vign_test/nc/vignettes/v3-capture-melt_files/figure-html/unnamed-chunk-5-1.png
960x288 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 12577 bytes
Input file size = 13444 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11522
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11522
Output IDAT size = 11522 bytes (1055 bytes decrease)
Output file size = 11600 bytes (1844 bytes = 13.72% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/nc.Rcheck/vign_test/nc/vignettes/v3-capture-melt_files/figure-html/unnamed-chunk-12-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 18204 bytes
Input file size = 18306 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17917
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 17003
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 17003
Output IDAT size = 17003 bytes (1201 bytes decrease)
Output file size = 17081 bytes (1225 bytes = 6.69% decrease)
--- finished re-building ‘v3-capture-melt.Rmd’
--- re-building ‘v4-comparisons.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/nc.Rcheck/vign_test/nc/vignettes/v4-comparisons_files/figure-html/unnamed-chunk-3-1.png
288x288 pixels, 8 bits/pixel, 254 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 8235 bytes
Input file size = 9099 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7819
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7819
Output IDAT size = 7819 bytes (416 bytes decrease)
Output file size = 7897 bytes (1202 bytes = 13.21% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/nc.Rcheck/vign_test/nc/vignettes/v4-comparisons_files/figure-html/unnamed-chunk-5-1.png
288x288 pixels, 8 bits/pixel, 254 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 8055 bytes
Input file size = 8907 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7583
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7583
Output IDAT size = 7583 bytes (472 bytes decrease)
Output file size = 7661 bytes (1246 bytes = 13.99% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/nc.Rcheck/vign_test/nc/vignettes/v4-comparisons_files/figure-html/unnamed-chunk-16-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 8790 bytes
Input file size = 9660 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8271
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8271
Output IDAT size = 8271 bytes (519 bytes decrease)
Output file size = 8349 bytes (1311 bytes = 13.57% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/nc.Rcheck/vign_test/nc/vignettes/v4-comparisons_files/figure-html/unnamed-chunk-19-1.png
288x288 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 7166 bytes
Input file size = 8021 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6754
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6754
Output IDAT size = 6754 bytes (412 bytes decrease)
Output file size = 6832 bytes (1189 bytes = 14.82% decrease)
Quitting from lines 669-685 [unnamed-chunk-21] (v4-comparisons.Rmd)
Error: processing vignette 'v4-comparisons.Rmd' failed with diagnostics:
Can't combine `Allele 1` <character> and `Allele 29` <logical>.
--- failed re-building ‘v4-comparisons.Rmd’
--- re-building ‘v5-helpers.Rmd’ using rmarkdown
--- finished re-building 'v5-helpers.Rmd'
--- re-building ‘v6-engines.Rmd’ using rmarkdown
--- finished re-building ‘v6-engines.Rmd’
--- re-building ‘v7-capture-glob.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/nc.Rcheck/vign_test/nc/vignettes/v7-capture-glob_files/figure-html/unnamed-chunk-15-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 13699 bytes
Input file size = 14569 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13210
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13210
Output IDAT size = 13210 bytes (489 bytes decrease)
Output file size = 13288 bytes (1281 bytes = 8.79% decrease)
--- finished re-building ‘v7-capture-glob.Rmd’
SUMMARY: processing the following file failed:
‘v4-comparisons.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc