Last updated on 2024-10-06 07:50:59 CEST.
| Package | ERROR | OK |
|---|---|---|
| pubh | 5 | 8 |
Current CRAN status: ERROR: 5, OK: 8
Version: 1.3.7
Check: examples
Result: ERROR
Running examples in ‘pubh-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Bernard
> ### Title: Survival of patients with sepsis.
> ### Aliases: Bernard
> ### Keywords: datasets
>
> ### ** Examples
>
> require(dplyr, quietly = TRUE)
Attaching package: ‘dplyr’
The following object is masked from ‘package:huxtable’:
add_rownames
The following objects are masked from ‘package:stats’:
filter, lag
The following objects are masked from ‘package:base’:
intersect, setdiff, setequal, union
> data(Bernard)
>
> Bernard |>
+ select(fate, treat) |>
+ cross_tbl(by = "fate")
Error in `dplyr::mutate()`:
ℹ In argument: `df_stats = list(...)`.
Caused by error in `dplyr::mutate()`:
ℹ In argument: `stat = map(...)`.
Caused by error in `glue_data()`:
! is.environment(.envir) is not TRUE
Backtrace:
1. pubh::cross_tbl(select(Bernard, fate, treat), by = "fate")
51. gtsummary:::map(...)
52. base::lapply(.x, .f, ...)
53. gtsummary (local) FUN(X[[i]], ...)
54. glue::glue(...)
55. glue::glue_data(...)
56. base::stopifnot(is.environment(.envir))
57. base::stop(simpleError(msg, call = if (p <- sys.parent(1L)) sys.call(p)))
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-patched-linux-x86_64
Version: 1.3.7
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘introduction.Rmd’ using rmarkdown
Quitting from lines 134-142 [unnamed-chunk-6] (introduction.Rmd)
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
ℹ In argument: `df_stats = list(...)`.
Caused by error in `dplyr::mutate()`:
ℹ In argument: `stat = map(...)`.
Caused by error in `glue_data()`:
! is.environment(.envir) is not TRUE
--- failed re-building ‘introduction.Rmd’
--- re-building ‘regression.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/regression_files/figure-html/unnamed-chunk-3-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 17644 bytes
Input file size = 17746 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13737
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13737
Output IDAT size = 13737 bytes (3907 bytes decrease)
Output file size = 13815 bytes (3931 bytes = 22.15% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/regression_files/figure-html/unnamed-chunk-13-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 19783 bytes
Input file size = 19885 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14442
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14442
Output IDAT size = 14442 bytes (5341 bytes decrease)
Output file size = 14520 bytes (5365 bytes = 26.98% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/regression_files/figure-html/unnamed-chunk-14-1.png
480x384 pixels, 8 bits/pixel, 232 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 7074 bytes
Input file size = 7860 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6204
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6204
Output IDAT size = 6204 bytes (870 bytes decrease)
Output file size = 6282 bytes (1578 bytes = 20.08% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/regression_files/figure-html/unnamed-chunk-15-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 19570 bytes
Input file size = 19672 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14240
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14240
Output IDAT size = 14240 bytes (5330 bytes decrease)
Output file size = 14318 bytes (5354 bytes = 27.22% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/regression_files/figure-html/unnamed-chunk-18-1.png
480x384 pixels, 8 bits/pixel, 243 colors in palette
Input IDAT size = 5174 bytes
Input file size = 5993 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4302
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4302
Output IDAT size = 4302 bytes (872 bytes decrease)
Output file size = 5121 bytes (872 bytes = 14.55% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/regression_files/figure-html/unnamed-chunk-23-1.png
480x384 pixels, 8 bits/pixel, 237 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 8448 bytes
Input file size = 9261 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7373
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7373
Output IDAT size = 7373 bytes (1075 bytes decrease)
Output file size = 7451 bytes (1810 bytes = 19.54% decrease)
Quitting from lines 272-288 [unnamed-chunk-25] (regression.Rmd)
Error: processing vignette 'regression.Rmd' failed with diagnostics:
ℹ In argument: `tbl = switch(...)`.
Caused by error in `dplyr::mutate()`:
ℹ In argument: `df_stats = list(...)`.
Caused by error in `dplyr::mutate()`:
ℹ In argument: `stat = map(...)`.
Caused by error in `glue_data()`:
! is.environment(.envir) is not TRUE
--- failed re-building ‘regression.Rmd’
SUMMARY: processing the following files failed:
‘introduction.Rmd’ ‘regression.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.3.7
Check: examples
Result: ERROR
Running examples in ‘pubh-Ex.R’ failed
The error most likely occurred in:
> ### Name: Bernard
> ### Title: Survival of patients with sepsis.
> ### Aliases: Bernard
> ### Keywords: datasets
>
> ### ** Examples
>
> require(dplyr, quietly = TRUE)
Attaching package: ‘dplyr’
The following object is masked from ‘package:huxtable’:
add_rownames
The following objects are masked from ‘package:stats’:
filter, lag
The following objects are masked from ‘package:base’:
intersect, setdiff, setequal, union
> data(Bernard)
>
> Bernard |>
+ select(fate, treat) |>
+ cross_tbl(by = "fate")
Error in `dplyr::mutate()`:
ℹ In argument: `df_stats = list(...)`.
Caused by error in `dplyr::mutate()`:
ℹ In argument: `stat = map(...)`.
Caused by error in `glue_data()`:
! is.environment(.envir) is not TRUE
Backtrace:
1. pubh::cross_tbl(select(Bernard, fate, treat), by = "fate")
51. gtsummary:::map(...)
52. base::lapply(.x, .f, ...)
53. gtsummary (local) FUN(X[[i]], ...)
54. glue::glue(...)
55. glue::glue_data(...)
56. base::stopifnot(is.environment(.envir))
57. base::stop(simpleError(msg, call = if (p <- sys.parent(1L)) sys.call(p)))
Execution halted
Flavors: r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-oldrel-windows-x86_64
Version: 1.3.7
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘introduction.Rmd’ using rmarkdown
Quitting from lines 134-142 [unnamed-chunk-6] (introduction.Rmd)
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
ℹ In argument: `df_stats = list(...)`.
Caused by error in `dplyr::mutate()`:
ℹ In argument: `stat = map(...)`.
Caused by error in `glue_data()`:
! is.environment(.envir) is not TRUE
--- failed re-building ‘introduction.Rmd’
--- re-building ‘regression.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/pubh.Rcheck/vign_test/pubh/vignettes/regression_files/figure-html/unnamed-chunk-3-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 17644 bytes
Input file size = 17746 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13737
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13737
Output IDAT size = 13737 bytes (3907 bytes decrease)
Output file size = 13815 bytes (3931 bytes = 22.15% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/pubh.Rcheck/vign_test/pubh/vignettes/regression_files/figure-html/unnamed-chunk-13-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 19808 bytes
Input file size = 19910 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14294
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14294
Output IDAT size = 14294 bytes (5514 bytes decrease)
Output file size = 14372 bytes (5538 bytes = 27.82% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/pubh.Rcheck/vign_test/pubh/vignettes/regression_files/figure-html/unnamed-chunk-14-1.png
480x384 pixels, 8 bits/pixel, 232 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 7074 bytes
Input file size = 7860 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6204
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6204
Output IDAT size = 6204 bytes (870 bytes decrease)
Output file size = 6282 bytes (1578 bytes = 20.08% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/pubh.Rcheck/vign_test/pubh/vignettes/regression_files/figure-html/unnamed-chunk-15-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 19570 bytes
Input file size = 19672 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14240
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14240
Output IDAT size = 14240 bytes (5330 bytes decrease)
Output file size = 14318 bytes (5354 bytes = 27.22% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/pubh.Rcheck/vign_test/pubh/vignettes/regression_files/figure-html/unnamed-chunk-18-1.png
480x384 pixels, 8 bits/pixel, 243 colors in palette
Input IDAT size = 5174 bytes
Input file size = 5993 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4302
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4302
Output IDAT size = 4302 bytes (872 bytes decrease)
Output file size = 5121 bytes (872 bytes = 14.55% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/pubh.Rcheck/vign_test/pubh/vignettes/regression_files/figure-html/unnamed-chunk-23-1.png
480x384 pixels, 8 bits/pixel, 237 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 8449 bytes
Input file size = 9262 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7373
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7373
Output IDAT size = 7373 bytes (1076 bytes decrease)
Output file size = 7451 bytes (1811 bytes = 19.55% decrease)
Quitting from lines 272-288 [unnamed-chunk-25] (regression.Rmd)
Error: processing vignette 'regression.Rmd' failed with diagnostics:
ℹ In argument: `tbl = switch(...)`.
Caused by error in `dplyr::mutate()`:
ℹ In argument: `df_stats = list(...)`.
Caused by error in `dplyr::mutate()`:
ℹ In argument: `stat = map(...)`.
Caused by error in `glue_data()`:
! is.environment(.envir) is not TRUE
--- failed re-building ‘regression.Rmd’
SUMMARY: processing the following files failed:
‘introduction.Rmd’ ‘regression.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.3.7
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'introduction.Rmd' using rmarkdown
Quitting from lines 134-142 [unnamed-chunk-6] (introduction.Rmd)
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
ℹ In argument: `df_stats = list(...)`.
Caused by error in `dplyr::mutate()`:
ℹ In argument: `stat = map(...)`.
Caused by error in `glue_data()`:
! is.environment(.envir) is not TRUE
--- failed re-building 'introduction.Rmd'
--- re-building 'regression.Rmd' using rmarkdown
Quitting from lines 272-288 [unnamed-chunk-25] (regression.Rmd)
Error: processing vignette 'regression.Rmd' failed with diagnostics:
ℹ In argument: `tbl = switch(...)`.
Caused by error in `dplyr::mutate()`:
ℹ In argument: `df_stats = list(...)`.
Caused by error in `dplyr::mutate()`:
ℹ In argument: `stat = map(...)`.
Caused by error in `glue_data()`:
! is.environment(.envir) is not TRUE
--- failed re-building 'regression.Rmd'
SUMMARY: processing the following files failed:
'introduction.Rmd' 'regression.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-windows-x86_64, r-oldrel-windows-x86_64
Version: 1.3.7
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘introduction.Rmd’ using rmarkdown
Quitting from lines 134-142 [unnamed-chunk-6] (introduction.Rmd)
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
ℹ In argument: `df_stats = list(...)`.
Caused by error in `dplyr::mutate()`:
ℹ In argument: `stat = map(...)`.
Caused by error in `glue_data()`:
! is.environment(.envir) is not TRUE
--- failed re-building ‘introduction.Rmd’
--- re-building ‘regression.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/regression_files/figure-html/unnamed-chunk-3-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 17644 bytes
Input file size = 17746 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13737
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13737
Output IDAT size = 13737 bytes (3907 bytes decrease)
Output file size = 13815 bytes (3931 bytes = 22.15% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/regression_files/figure-html/unnamed-chunk-13-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 19844 bytes
Input file size = 19946 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14319
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14319
Output IDAT size = 14319 bytes (5525 bytes decrease)
Output file size = 14397 bytes (5549 bytes = 27.82% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/regression_files/figure-html/unnamed-chunk-14-1.png
480x384 pixels, 8 bits/pixel, 232 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 7074 bytes
Input file size = 7860 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6204
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6204
Output IDAT size = 6204 bytes (870 bytes decrease)
Output file size = 6282 bytes (1578 bytes = 20.08% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/regression_files/figure-html/unnamed-chunk-15-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 19570 bytes
Input file size = 19672 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14240
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14240
Output IDAT size = 14240 bytes (5330 bytes decrease)
Output file size = 14318 bytes (5354 bytes = 27.22% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/regression_files/figure-html/unnamed-chunk-18-1.png
480x384 pixels, 8 bits/pixel, 243 colors in palette
Input IDAT size = 5174 bytes
Input file size = 5993 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4302
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4302
Output IDAT size = 4302 bytes (872 bytes decrease)
Output file size = 5121 bytes (872 bytes = 14.55% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/regression_files/figure-html/unnamed-chunk-23-1.png
480x384 pixels, 8 bits/pixel, 237 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 8448 bytes
Input file size = 9261 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7373
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7373
Output IDAT size = 7373 bytes (1075 bytes decrease)
Output file size = 7451 bytes (1810 bytes = 19.54% decrease)
Quitting from lines 272-288 [unnamed-chunk-25] (regression.Rmd)
Error: processing vignette 'regression.Rmd' failed with diagnostics:
ℹ In argument: `tbl = switch(...)`.
Caused by error in `dplyr::mutate()`:
ℹ In argument: `df_stats = list(...)`.
Caused by error in `dplyr::mutate()`:
ℹ In argument: `stat = map(...)`.
Caused by error in `glue_data()`:
! is.environment(.envir) is not TRUE
--- failed re-building ‘regression.Rmd’
SUMMARY: processing the following files failed:
‘introduction.Rmd’ ‘regression.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-linux-x86_64