Last updated on 2026-02-11 07:51:09 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| tiledb | 3 | 3 | 7 |
Current CRAN status: ERROR: 3, NOTE: 3, OK: 7
clang-ASAN gcc-ASAN M1mac musl
Version: 0.33.0
Check: examples
Result: ERROR
Running examples in ‘tiledb-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: fromDataFrame
> ### Title: Create a TileDB dense or sparse array from a given 'data.frame'
> ### Object
> ### Aliases: fromDataFrame
>
> ### ** Examples
>
> ## Don't show:
> ctx <- tiledb_ctx(limitTileDBCores())
> ## End(Don't show)
> uri <- tempfile()
> fromDataFrame(iris, uri)
*** caught segfault ***
address 0x7ffc0bb3b000, cause 'memory not mapped'
Traceback:
1: RcppSpdlog::formatter(s, v)
2: fmt(s, ...)
3: RcppSpdlog::log_debug(fmt(s, ...))
4: spdl::debug("[tiledb_array] query is {}", query_type)
5: tiledb_array(uri, query_type = "WRITE")
6: fromDataFrame(iris, uri)
An irrecoverable exception occurred. R is aborting now ...
Segmentation fault
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.33.0
Check: tests
Result: ERROR
Running ‘pkgconfig-test.R’ [2s/2s]
Running ‘tinytest.R’ [3s/4s]
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
> if (requireNamespace("tinytest", quietly = TRUE)) {
+ if (R.Version()$minor >= "2.0" && Sys.getenv("MY_UNIVERSE", "") == "") {
+ tinytest::test_package("tiledb")
+ }
+ }
test_aggregates.R............. 0 tests
test_aggregates.R............. 0 tests
test_aggregates.R............. 0 tests
test_aggregates.R............. 0 tests
test_aggregates.R............. 0 tests
Attaching package: 'palmerpenguins'
The following objects are masked from 'package:datasets':
penguins, penguins_raw
test_aggregates.R............. 0 tests
test_aggregates.R............. 0 tests
*** caught segfault ***
address 0x7ffe3ac6d000, cause 'memory not mapped'
Traceback:
1: RcppSpdlog::formatter(s, v)
2: fmt(s, ...)
3: RcppSpdlog::log_debug(fmt(s, ...))
4: spdl::debug("[tiledb_array] query is {}", query_type)
5: tiledb_array(uri, query_type = "WRITE")
6: fromDataFrame(penguins, uri, sparse = TRUE)
7: doTryCatch(return(expr), name, parentenv, handler)
8: tryCatchOne(expr, names, parentenv, handlers[[1L]])
9: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
10: doTryCatch(return(expr), name, parentenv, handler)
11: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), names[nh], parentenv, handlers[[nh]])
12: tryCatchList(expr, classes, parentenv, handlers)
13: tryCatch(current, error = function(e) { result <<- FALSE msg <<- e$message type <<- "An error"}, warning = function(w) { result <<- FALSE msg <<- w$message type <<- "A warning"})
14: fun(...)
15: expect_silent(fromDataFrame(penguins, uri, sparse = TRUE))
16: eval(expr, envir = e)
17: eval(expr, envir = e)
18: FUN(X[[i]], ...)
19: lapply(basename(testfiles), run_test_file, at_home = at_home, verbose = verbose, color = color, remove_side_effects = remove_side_effects, ...)
20: run_test_dir(testdir, at_home = at_home, cluster = cluster, ...)
21: tinytest::test_package("tiledb")
An irrecoverable exception occurred. R is aborting now ...
Segmentation fault
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.33.0
Check: examples
Result: ERROR
Running examples in ‘tiledb-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: fromDataFrame
> ### Title: Create a TileDB dense or sparse array from a given 'data.frame'
> ### Object
> ### Aliases: fromDataFrame
>
> ### ** Examples
>
> ## Don't show:
> ctx <- tiledb_ctx(limitTileDBCores())
> ## End(Don't show)
> uri <- tempfile()
> fromDataFrame(iris, uri)
*** caught segfault ***
address 0x7f7000022000, cause 'invalid permissions'
Traceback:
1: RcppSpdlog::formatter(s, v)
2: fmt(s, ...)
3: RcppSpdlog::log_debug(fmt(s, ...))
4: spdl::debug("[tiledb_array] query is {}", query_type)
5: tiledb_array(uri, query_type = "WRITE")
6: fromDataFrame(iris, uri)
An irrecoverable exception occurred. R is aborting now ...
Segmentation fault
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.33.0
Check: tests
Result: ERROR
Running ‘pkgconfig-test.R’ [1s/2s]
Running ‘tinytest.R’ [2s/2s]
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
> if (requireNamespace("tinytest", quietly = TRUE)) {
+ if (R.Version()$minor >= "2.0" && Sys.getenv("MY_UNIVERSE", "") == "") {
+ tinytest::test_package("tiledb")
+ }
+ }
test_aggregates.R............. 0 tests
test_aggregates.R............. 0 tests
test_aggregates.R............. 0 tests
test_aggregates.R............. 0 tests
test_aggregates.R............. 0 tests
Attaching package: 'palmerpenguins'
The following objects are masked from 'package:datasets':
penguins, penguins_raw
test_aggregates.R............. 0 tests
test_aggregates.R............. 0 tests
*** caught segfault ***
address 0x7fdd03ff7000, cause 'memory not mapped'
Traceback:
1: RcppSpdlog::formatter(s, v)
2: fmt(s, ...)
3: RcppSpdlog::log_debug(fmt(s, ...))
4: spdl::debug("[tiledb_array] query is {}", query_type)
5: tiledb_array(uri, query_type = "WRITE")
6: fromDataFrame(penguins, uri, sparse = TRUE)
7: doTryCatch(return(expr), name, parentenv, handler)
8: tryCatchOne(expr, names, parentenv, handlers[[1L]])
9: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
10: doTryCatch(return(expr), name, parentenv, handler)
11: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), names[nh], parentenv, handlers[[nh]])
12: tryCatchList(expr, classes, parentenv, handlers)
13: tryCatch(current, error = function(e) { result <<- FALSE msg <<- e$message type <<- "An error"}, warning = function(w) { result <<- FALSE msg <<- w$message type <<- "A warning"})
14: fun(...)
15: expect_silent(fromDataFrame(penguins, uri, sparse = TRUE))
16: eval(expr, envir = e)
17: eval(expr, envir = e)
18: FUN(X[[i]], ...)
19: lapply(basename(testfiles), run_test_file, at_home = at_home, verbose = verbose, color = color, remove_side_effects = remove_side_effects, ...)
20: run_test_dir(testdir, at_home = at_home, cluster = cluster, ...)
21: tinytest::test_package("tiledb")
An irrecoverable exception occurred. R is aborting now ...
Segmentation fault
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.33.0
Check: examples
Result: ERROR
Running examples in ‘tiledb-Ex.R’ failed
The error most likely occurred in:
> ### Name: fromDataFrame
> ### Title: Create a TileDB dense or sparse array from a given 'data.frame'
> ### Object
> ### Aliases: fromDataFrame
>
> ### ** Examples
>
> ## Don't show:
> ctx <- tiledb_ctx(limitTileDBCores())
> ## End(Don't show)
> uri <- tempfile()
> fromDataFrame(iris, uri)
*** caught segfault ***
address 0x8360d8, cause 'memory not mapped'
Traceback:
1: RcppSpdlog::formatter(s, v)
2: fmt(s, ...)
3: RcppSpdlog::log_debug(fmt(s, ...))
4: spdl::debug("[tiledb_array] query is {}", query_type)
5: tiledb_array(uri, query_type = "WRITE")
6: fromDataFrame(iris, uri)
An irrecoverable exception occurred. R is aborting now ...
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.33.0
Check: tests
Result: ERROR
Running ‘pkgconfig-test.R’
Running ‘tinytest.R’
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
> if (requireNamespace("tinytest", quietly = TRUE)) {
+ if (R.Version()$minor >= "2.0" && Sys.getenv("MY_UNIVERSE", "") == "") {
+ tinytest::test_package("tiledb")
+ }
+ }
test_aggregates.R............. 0 tests
test_aggregates.R............. 0 tests
test_aggregates.R............. 0 tests
test_aggregates.R............. 0 tests
test_aggregates.R............. 0 tests
Attaching package: 'palmerpenguins'
The following objects are masked from 'package:datasets':
penguins, penguins_raw
test_aggregates.R............. 0 tests
test_aggregates.R............. 0 tests
*** caught segfault ***
address 0x8360d8, cause 'memory not mapped'
Traceback:
1: RcppSpdlog::formatter(s, v)
2: fmt(s, ...)
3: RcppSpdlog::log_debug(fmt(s, ...))
4: spdl::debug("[tiledb_array] query is {}", query_type)
5: tiledb_array(uri, query_type = "WRITE")
6: fromDataFrame(penguins, uri, sparse = TRUE)
7: doTryCatch(return(expr), name, parentenv, handler)
8: tryCatchOne(expr, names, parentenv, handlers[[1L]])
9: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
10: doTryCatch(return(expr), name, parentenv, handler)
11: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), names[nh], parentenv, handlers[[nh]])
12: tryCatchList(expr, classes, parentenv, handlers)
13: tryCatch(current, error = function(e) { result <<- FALSE msg <<- e$message type <<- "An error"}, warning = function(w) { result <<- FALSE msg <<- w$message type <<- "A warning"})
14: fun(...)
15: expect_silent(fromDataFrame(penguins, uri, sparse = TRUE))
16: eval(expr, envir = e)
17: eval(expr, envir = e)
18: FUN(X[[i]], ...)
19: lapply(basename(testfiles), run_test_file, at_home = at_home, verbose = verbose, color = color, remove_side_effects = remove_side_effects, ...)
20: run_test_dir(testdir, at_home = at_home, cluster = cluster, ...)
21: tinytest::test_package("tiledb")
An irrecoverable exception occurred. R is aborting now ...
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.33.0
Check: installed package size
Result: NOTE
installed size is 56.9Mb
sub-directories of 1Mb or more:
libs 16.2Mb
tiledb 38.1Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64