Last updated on 2025-10-31 07:51:43 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.0.0 | 2.18 | 114.05 | 116.23 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.0.0 | 1.55 | 76.47 | 78.02 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.0.0 | 10.00 | 183.91 | 193.91 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.0.0 | 13.00 | 197.24 | 210.24 | OK | |
| r-devel-windows-x86_64 | 1.0.0.0 | 3.00 | 113.00 | 116.00 | OK | |
| r-patched-linux-x86_64 | 1.0.0.0 | 2.34 | 32.45 | 34.79 | ERROR | |
| r-release-linux-x86_64 | 1.0.0.0 | 2.40 | 108.75 | 111.15 | OK | |
| r-release-macos-arm64 | 1.0.0.0 | 1.00 | 117.00 | 118.00 | OK | |
| r-release-macos-x86_64 | 1.0.0.0 | 2.00 | 213.00 | 215.00 | OK | |
| r-release-windows-x86_64 | 1.0.0.0 | 5.00 | 112.00 | 117.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.0.0 | 1.00 | 98.00 | 99.00 | OK | |
| r-oldrel-macos-x86_64 | 1.0.0.0 | 2.00 | 174.00 | 176.00 | OK | |
| r-oldrel-windows-x86_64 | 1.0.0.0 | 5.00 | 153.00 | 158.00 | OK |
Version: 1.0.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [1s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(dependentsimr)
>
> test_check("dependentsimr")
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 6 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-dependentsim.R:77:1'): (code run outside of `test_that()`) ─────
<rlib_error_package_not_found/rlang_error/error/condition>
Error in `fit_deseq(data)`: The package "DESeq2" is required Using type='DESeq2' requires DESeq2
Backtrace:
▆
1. └─dependentsimr::get_random_structure(...) at test-dependentsim.R:77:1
2. └─dependentsimr:::marginals_and_transform(datasets, types)
3. └─dependentsimr:::fit_deseq(data)
4. └─rlang::check_installed("DESeq2", reason = "Using type='DESeq2' requires DESeq2")
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 6 ]
Error: Test failures
Execution halted
Flavor: r-patched-linux-x86_64
Version: 1.0.0.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘simulate_data.Rmd’ using rmarkdown
Quitting from simulate_data.Rmd:85-87 [unnamed-chunk-7]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'simulate_data.Rmd' failed with diagnostics:
The package "DESeq2" is required Using type='DESeq2' requires DESeq2
--- failed re-building ‘simulate_data.Rmd’
SUMMARY: processing the following file failed:
‘simulate_data.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-linux-x86_64