Last updated on 2024-11-27 07:50:10 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0-0 | 4.71 | 48.42 | 53.13 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0-0 | 3.43 | 34.53 | 37.96 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0-0 | 89.62 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0-0 | 81.81 | OK | |||
| r-devel-windows-x86_64 | 1.0-0 | 6.00 | 76.00 | 82.00 | OK | |
| r-patched-linux-x86_64 | 1.0-0 | 6.69 | 45.94 | 52.63 | OK | |
| r-release-linux-x86_64 | 0.4-6 | 3.45 | 43.98 | 47.43 | ERROR | |
| r-release-macos-arm64 | 1.0-0 | 30.00 | OK | |||
| r-release-macos-x86_64 | 1.0-0 | 67.00 | OK | |||
| r-release-windows-x86_64 | 1.0-0 | 7.00 | 76.00 | 83.00 | OK | |
| r-oldrel-macos-arm64 | 1.0-0 | 32.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.0-0 | 49.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.0-0 | 8.00 | 78.00 | 86.00 | OK |
Version: 0.4-6
Check: Rd files
Result: NOTE
checkRd: (-1) plot-traj.Rd:71: Lost braces; missing escapes or markup?
71 | the plots are saved into directory {sim.dir}/predictions/migTrajectories.}
| ^
Flavor: r-release-linux-x86_64
Version: 0.4-6
Check: examples
Result: ERROR
Running examples in ‘bayesMig-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: mig.predict
> ### Title: Generate posterior trajectories of net migration rates
> ### Aliases: mig.predict bayesMig.prediction
>
> ### ** Examples
>
> # Toy simulation for US states
> us.mig.file <- file.path(find.package("bayesMig"), "extdata", "USmigrates.txt")
> sim.dir <- tempfile()
> m <- run.mig.mcmc(nr.chains = 2, iter = 30, thin = 1, my.mig.file = us.mig.file,
+ output.dir = sim.dir, present.year = 2017, annual = TRUE)
Starting Bayesian Hierarchical Model Migration.
========================================================
Initialize simulation - 2 chain(s) in total.
Chain nr. 1
************
Starting values:
mu a
-0.1 1.1
Store initial values into mc1
Flushing results into disk.
Start sampling - 30 iterations in total.
Iteration: 10 -- Sat Nov 9 20:17:30 2024
Iteration: 20 -- Sat Nov 9 20:17:30 2024
Iteration: 30 -- Sat Nov 9 20:17:30 2024
Flushing results into disk.
Chain nr. 2
************
Starting values:
mu a
0.1 5.0
Store initial values into mc2
Flushing results into disk.
Start sampling - 30 iterations in total.
Iteration: 10 -- Sat Nov 9 20:17:30 2024
Iteration: 20 -- Sat Nov 9 20:17:30 2024
Iteration: 30 -- Sat Nov 9 20:17:31 2024
Flushing results into disk.
Results stored in /home/hornik/tmp/scratch/Rtmp0NrDpk/file3705eb2788689
Simulation successfully finished!!!
>
> # Prediction
> pred <- mig.predict(sim.dir = sim.dir, burnin = 5, end.year = 2050)
Loading chain 1 from disk. (mcmc.list[[ 1 ]]).
Loading chain 2 from disk. (mcmc.list[[ 2 ]]).
Prediction from 2018 until 2050 (i.e. 33 projections)
Storing thinned mcmc:
Storing country-independent parameters ...done.
Storing country-specific parameters ...done.
Migration projection trajectory 1
Migration projection trajectory 2
Migration projection trajectory 3
Migration projection trajectory 4
Migration projection trajectory 5
Migration projection trajectory 6
Migration projection trajectory 7
Migration projection trajectory 8
Migration projection trajectory 9
Migration projection trajectory 10
Migration projection trajectory 11
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Migration projection trajectory 30
Migration projection trajectory 31
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Migration projection trajectory 33
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Migration projection trajectory 40
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Migration projection trajectory 43
Migration projection trajectory 44
Migration projection trajectory 45
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Migration projection trajectory 47
Migration projection trajectory 48
Migration projection trajectory 49
Migration projection trajectory 50
Creating summary files ...
Error in cbind(this.result1, proj.result) :
number of rows of matrices must match (see arg 2)
Calls: mig.predict ... mig.write.projection.summary -> <Anonymous> -> cbind
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.4-6
Check: tests
Result: ERROR
Running ‘run_tests.R’ [4s/4s]
Running ‘test_functions.R’ [0s/0s]
Running the tests in ‘tests/run_tests.R’ failed.
Complete output:
> library(bayesMig)
Loading required package: bayesTFR
> source('test_functions.R')
>
> #options(error=quote(dump.frames("last.dump", TRUE)))
>
> cran <- TRUE
>
> test.run.annual.simulation()
<=== Starting test of running annual migration MCMC for US states ====
Starting Bayesian Hierarchical Model Migration.
========================================================
Initialize simulation - 2 chain(s) in total.
Chain nr. 1
************
Starting values:
mu a
-0.1 1.1
Store initial values into mc1
Flushing results into disk.
Start sampling - 30 iterations in total.
Iteration: 10 -- Sat Nov 9 20:17:35 2024
Iteration: 20 -- Sat Nov 9 20:17:35 2024
Iteration: 30 -- Sat Nov 9 20:17:35 2024
Flushing results into disk.
Chain nr. 2
************
Starting values:
mu a
0.1 5.0
Store initial values into mc2
Flushing results into disk.
Start sampling - 30 iterations in total.
Iteration: 10 -- Sat Nov 9 20:17:36 2024
Iteration: 20 -- Sat Nov 9 20:17:36 2024
Iteration: 30 -- Sat Nov 9 20:17:36 2024
Flushing results into disk.
Results stored in /home/hornik/tmp/scratch/Rtmp42cNFK/file370d0145706b44
Simulation successfully finished!!!
==== Test of running annual migration MCMC for US states OK.===>
<=== Starting test of running annual projections ====
Loading chain 1 from disk. (mcmc.list[[ 1 ]]).
Loading chain 2 from disk. (mcmc.list[[ 2 ]]).
Prediction from 2018 until 2050 (i.e. 33 projections)
Storing thinned mcmc:
Storing country-independent parameters ...done.
Storing country-specific parameters ...done.
Migration projection trajectory 1
Migration projection trajectory 2
Migration projection trajectory 3
Migration projection trajectory 4
Migration projection trajectory 5
Migration projection trajectory 6
Migration projection trajectory 7
Migration projection trajectory 8
Migration projection trajectory 9
Migration projection trajectory 10
Migration projection trajectory 11
Migration projection trajectory 12
Migration projection trajectory 13
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Migration projection trajectory 20
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Migration projection trajectory 27
Migration projection trajectory 28
Migration projection trajectory 29
Migration projection trajectory 30
Migration projection trajectory 31
Migration projection trajectory 32
Migration projection trajectory 33
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Migration projection trajectory 35
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Migration projection trajectory 37
Migration projection trajectory 38
Migration projection trajectory 39
Migration projection trajectory 40
Creating summary files ...
Error in cbind(this.result1, proj.result) :
number of rows of matrices must match (see arg 2)
Calls: test.run.annual.simulation ... mig.write.projection.summary -> <Anonymous> -> cbind
Execution halted
Flavor: r-release-linux-x86_64