CRAN Package Check Results for Package GPCERF

Last updated on 2025-12-27 07:49:49 CET.

Flavor	Version	T_install	T_check	T_total	Status
r-devel-linux-x86_64-debian-clang	0.2.4	25.27	334.12	359.39	ERROR
r-devel-linux-x86_64-debian-gcc	0.2.4	17.63	206.07	223.70	ERROR
r-devel-linux-x86_64-fedora-clang	0.2.4	59.00	456.52	515.52	ERROR
r-devel-linux-x86_64-fedora-gcc	0.2.4	28.00	266.53	294.53	ERROR
r-devel-windows-x86_64	0.2.4	38.00	397.00	435.00	ERROR
r-patched-linux-x86_64	0.2.4	28.17	260.51	288.68	ERROR
r-release-linux-x86_64	0.2.4	25.96	146.59	172.55	ERROR
r-release-macos-arm64	0.2.4				OK
r-release-macos-x86_64	0.2.4	17.00	423.00	440.00	OK
r-release-windows-x86_64	0.2.4	34.00	384.00	418.00	ERROR
r-oldrel-macos-arm64	0.2.4				OK
r-oldrel-macos-x86_64	0.2.4	20.00	377.00	397.00	OK
r-oldrel-windows-x86_64	0.2.4	44.00	545.00	589.00	ERROR

Check Details

Version: 0.2.4
Check: DESCRIPTION meta-information
Result: NOTE Author field differs from that derived from Authors@R Author: ‘Naeem Khoshnevis [aut] (<https://orcid.org/0000-0003-4315-1426>, HUIT), Boyu Ren [aut, cre] (<https://orcid.org/0000-0002-5300-1184>, McLean Hospital), Tanujit Dey [ctb] (<https://orcid.org/0000-0001-5559-211X>, HMS), Danielle Braun [aut] (<https://orcid.org/0000-0002-5177-8598>, HSPH)’ Authors@R: ‘Naeem Khoshnevis [aut] (ORCID: <https://orcid.org/0000-0003-4315-1426>, AFFILIATION: HUIT), Boyu Ren [aut, cre] (ORCID: <https://orcid.org/0000-0002-5300-1184>, AFFILIATION: McLean Hospital), Tanujit Dey [ctb] (ORCID: <https://orcid.org/0000-0001-5559-211X>, AFFILIATION: HMS), Danielle Braun [aut] (ORCID: <https://orcid.org/0000-0002-5177-8598>, AFFILIATION: HSPH)’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 0.2.4
Check: tests
Result: ERROR Running ‘testthat.R’ [128s/134s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(GPCERF) > > test_check("GPCERF") 2025-12-25 17:37:30.81575 gimli2 1097491 GPCERF estimate_gps INFO: Started estimating GPS values ... Loading required package: nnls Saving _problems/test-compute_deriv_nn-21.R 2025-12-25 17:37:35.348998 gimli2 1097491 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_deriv_weights_gp-17.R 2025-12-25 17:37:39.136248 gimli2 1097491 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_m_sigma-32.R 2025-12-25 17:37:47.305633 gimli2 1097491 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-25 17:37:51.225448 gimli2 1097491 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-25 17:37:55.018407 gimli2 1097491 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=1105294 on localhost:11994 at 17:37:55.353 2025-12-25 17:37:59.42045 gimli2 1097491 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.402 s. 2025-12-25 17:37:59.46593 gimli2 1097491 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-25 17:38:03.149663 gimli2 1097491 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-25 17:38:06.744652 gimli2 1097491 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_weight_gp-49.R 2025-12-25 17:38:10.925557 gimli2 1097491 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-25 17:38:14.636906 gimli2 1097491 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-24 r89227), detected cores: 32 2025-12-25 17:38:18.48831 gimli2 1097491 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-25 17:38:21.008209 gimli2 1097491 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-24 r89227), detected cores: 32 2025-12-25 17:38:21.050573 gimli2 1097491 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-25 17:38:24.689993 gimli2 1097491 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-24 r89227), detected cores: 32 2025-12-25 17:38:24.709002 gimli2 1097491 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-24 r89227), detected cores: 32 2025-12-25 17:38:24.730425 gimli2 1097491 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-24 r89227), detected cores: 32 2025-12-25 17:38:24.76524 gimli2 1097491 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-24 r89227), detected cores: 32 2025-12-25 17:38:24.804397 gimli2 1097491 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-24 r89227), detected cores: 32 2025-12-25 17:38:24.845599 gimli2 1097491 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-24 r89227), detected cores: 32 2025-12-25 17:38:24.885033 gimli2 1097491 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-24 r89227), detected cores: 32 2025-12-25 17:38:25.037045 gimli2 1097491 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-25 17:38:28.647655 gimli2 1097491 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-24 r89227), detected cores: 32 starting worker pid=1112947 on localhost:11994 at 17:38:29.093 starting worker pid=1112946 on localhost:11994 at 17:38:29.124 2025-12-25 17:38:37.866322 gimli2 1097491 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-25 17:38:42.285972 gimli2 1097491 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-24 r89227), detected cores: 32 2025-12-25 17:38:42.299581 gimli2 1097491 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-25 17:38:42.308606 gimli2 1097491 GPCERF find_optimal_nn INFO: Started finding optimal values ... starting worker pid=1116805 on localhost:11994 at 17:38:42.829 2025-12-25 17:38:47.277465 gimli2 1097491 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 4.96300000000001 s.} ... 2025-12-25 17:38:47.280491 gimli2 1097491 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=1118157 on localhost:11994 at 17:38:47.723 2025-12-25 17:38:51.522121 gimli2 1097491 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.242 s. 2025-12-25 17:38:51.52898 gimli2 1097491 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ... starting worker pid=1119207 on localhost:11994 at 17:38:51.957 2025-12-25 17:38:58.013857 gimli2 1097491 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 6.48899999999999 s. 2025-12-25 17:38:58.016311 gimli2 1097491 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 15.717 s. 2025-12-25 17:38:58.026569 gimli2 1097491 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-24 r89227), detected cores: 32 2025-12-25 17:38:58.03619 gimli2 1097491 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-25 17:38:58.074757 gimli2 1097491 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-24 r89227), detected cores: 32 2025-12-25 17:38:58.087438 gimli2 1097491 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-25 17:38:58.16663 gimli2 1097491 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-24 r89227), detected cores: 32 2025-12-25 17:38:58.17647 gimli2 1097491 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-25 17:38:58.203394 gimli2 1097491 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-25 17:39:00.527213 gimli2 1097491 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-24 r89227), detected cores: 32 2025-12-25 17:39:00.541071 gimli2 1097491 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-25 17:39:00.568949 gimli2 1097491 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-24 r89227), detected cores: 32 2025-12-25 17:39:00.581659 gimli2 1097491 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-25 17:39:00.617618 gimli2 1097491 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-estimate_gps-15.R 2025-12-25 17:39:04.542085 gimli2 1097491 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-25 17:39:08.104996 gimli2 1097491 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=1123457 on localhost:11994 at 17:39:08.488 2025-12-25 17:39:12.66418 gimli2 1097491 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.559 s. 2025-12-25 17:39:12.666591 gimli2 1097491 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ... starting worker pid=1124807 on localhost:11994 at 17:39:13.014 2025-12-25 17:39:17.290832 gimli2 1097491 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 4.624 s. Saving _problems/test-estimate_mean_sd_nn-37.R 2025-12-25 17:39:17.354932 gimli2 1097491 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-25 17:39:19.672784 gimli2 1097491 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-25 17:39:23.535813 gimli2 1097491 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=1127817 on localhost:11994 at 17:39:23.972 2025-12-25 17:39:27.645303 gimli2 1097491 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.10899999999999 s. 2025-12-25 17:39:27.706303 gimli2 1097491 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-25 17:39:31.727827 gimli2 1097491 GPCERF find_optimal_nn INFO: Started finding optimal values ... starting worker pid=1130628 on localhost:11994 at 17:39:32.132 2025-12-25 17:39:38.391339 gimli2 1097491 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 6.66200000000001 s.} ... [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ── Expected `deriv_val[1, 1]` to equal 1.558466. Differences: `actual`: -1.0 `expected`: 1.6 ── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ── Expected `weights[37]` to equal 3.307249e-05. Differences: `actual`: -0.00011 `expected`: 0.00003 ── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ── Expected `gp_cerf[10]` to equal 2.105425. Differences: `actual`: -6.1 `expected`: 2.1 ── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ───────────── Expected `weight$weight[28]` to equal 0.0002182767. Differences: `actual`: 0.00000 `expected`: 0.00022 ── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ─────── Expected `gps_m$gps[4, 1]` to equal 8.74310154. Differences: `actual`: 7.3 `expected`: 8.7 ── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ── Expected `val[10]` to equal 5.031225. Differences: `actual`: 5.067 `expected`: 5.031 [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.2.4
Check: tests
Result: ERROR Running ‘testthat.R’ [70s/100s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(GPCERF) > > test_check("GPCERF") 2025-12-26 13:23:20.411655 gimli1 1103852 GPCERF estimate_gps INFO: Started estimating GPS values ... Loading required package: nnls Saving _problems/test-compute_deriv_nn-21.R 2025-12-26 13:23:24.151938 gimli1 1103852 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_deriv_weights_gp-17.R 2025-12-26 13:23:27.865208 gimli1 1103852 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_m_sigma-32.R 2025-12-26 13:23:34.446673 gimli1 1103852 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-26 13:23:37.899235 gimli1 1103852 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-26 13:23:40.796353 gimli1 1103852 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=1118497 on localhost:11147 at 13:23:41.196 2025-12-26 13:23:43.488106 gimli1 1103852 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.692 s. 2025-12-26 13:23:43.542757 gimli1 1103852 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-26 13:23:46.862825 gimli1 1103852 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-26 13:23:50.23242 gimli1 1103852 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_weight_gp-49.R 2025-12-26 13:23:54.314414 gimli1 1103852 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-26 13:23:57.554426 gimli1 1103852 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-24 r89227), detected cores: 64 2025-12-26 13:23:59.738854 gimli1 1103852 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-26 13:24:01.921806 gimli1 1103852 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-24 r89227), detected cores: 64 2025-12-26 13:24:01.950748 gimli1 1103852 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-26 13:24:05.905401 gimli1 1103852 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-24 r89227), detected cores: 64 2025-12-26 13:24:05.932829 gimli1 1103852 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-24 r89227), detected cores: 64 2025-12-26 13:24:05.960866 gimli1 1103852 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-24 r89227), detected cores: 64 2025-12-26 13:24:05.995074 gimli1 1103852 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-24 r89227), detected cores: 64 2025-12-26 13:24:06.027741 gimli1 1103852 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-24 r89227), detected cores: 64 2025-12-26 13:24:06.060652 gimli1 1103852 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-24 r89227), detected cores: 64 2025-12-26 13:24:06.089004 gimli1 1103852 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-24 r89227), detected cores: 64 2025-12-26 13:24:06.127402 gimli1 1103852 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-26 13:24:09.190436 gimli1 1103852 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-24 r89227), detected cores: 64 starting worker pid=1142720 on localhost:11147 at 13:24:09.502 starting worker pid=1142721 on localhost:11147 at 13:24:09.609 2025-12-26 13:24:14.932372 gimli1 1103852 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-26 13:24:18.460579 gimli1 1103852 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-24 r89227), detected cores: 64 2025-12-26 13:24:18.481484 gimli1 1103852 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-26 13:24:18.484377 gimli1 1103852 GPCERF find_optimal_nn INFO: Started finding optimal values ... starting worker pid=1149826 on localhost:11147 at 13:24:18.826 2025-12-26 13:24:21.374636 gimli1 1103852 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 2.89 s.} ... 2025-12-26 13:24:21.376509 gimli1 1103852 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=1152403 on localhost:11147 at 13:24:21.767 2025-12-26 13:24:24.246689 gimli1 1103852 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.871 s. 2025-12-26 13:24:24.248925 gimli1 1103852 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ... starting worker pid=1155748 on localhost:11147 at 13:24:24.564 2025-12-26 13:24:27.492329 gimli1 1103852 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.24299999999999 s. 2025-12-26 13:24:27.493992 gimli1 1103852 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 9.013 s. 2025-12-26 13:24:27.497039 gimli1 1103852 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-24 r89227), detected cores: 64 2025-12-26 13:24:27.511631 gimli1 1103852 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-26 13:24:27.524852 gimli1 1103852 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-24 r89227), detected cores: 64 2025-12-26 13:24:27.541487 gimli1 1103852 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-26 13:24:27.582143 gimli1 1103852 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-24 r89227), detected cores: 64 2025-12-26 13:24:27.612776 gimli1 1103852 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-26 13:24:27.654174 gimli1 1103852 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-26 13:24:29.868053 gimli1 1103852 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-24 r89227), detected cores: 64 2025-12-26 13:24:29.883188 gimli1 1103852 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-26 13:24:29.90373 gimli1 1103852 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-24 r89227), detected cores: 64 2025-12-26 13:24:29.921146 gimli1 1103852 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-26 13:24:29.959941 gimli1 1103852 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-estimate_gps-15.R 2025-12-26 13:24:32.96151 gimli1 1103852 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-26 13:24:36.212917 gimli1 1103852 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=1167682 on localhost:11147 at 13:24:36.581 2025-12-26 13:24:38.746895 gimli1 1103852 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.53399999999999 s. 2025-12-26 13:24:38.748532 gimli1 1103852 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ... starting worker pid=1169970 on localhost:11147 at 13:24:39.091 2025-12-26 13:24:41.904478 gimli1 1103852 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.15600000000001 s. Saving _problems/test-estimate_mean_sd_nn-37.R 2025-12-26 13:24:41.94095 gimli1 1103852 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-26 13:24:44.11821 gimli1 1103852 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-26 13:24:47.35075 gimli1 1103852 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=1176156 on localhost:11147 at 13:24:47.613 2025-12-26 13:24:49.961151 gimli1 1103852 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.61 s. 2025-12-26 13:24:49.978419 gimli1 1103852 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-26 13:24:53.129493 gimli1 1103852 GPCERF find_optimal_nn INFO: Started finding optimal values ... starting worker pid=1179941 on localhost:11147 at 13:24:53.543 2025-12-26 13:24:57.468536 gimli1 1103852 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 4.337 s.} ... [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ── Expected `deriv_val[1, 1]` to equal 1.558466. Differences: `actual`: -1.0 `expected`: 1.6 ── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ── Expected `weights[37]` to equal 3.307249e-05. Differences: `actual`: -0.00011 `expected`: 0.00003 ── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ── Expected `gp_cerf[10]` to equal 2.105425. Differences: `actual`: -6.1 `expected`: 2.1 ── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ───────────── Expected `weight$weight[28]` to equal 0.0002182767. Differences: `actual`: 0.00000 `expected`: 0.00022 ── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ─────── Expected `gps_m$gps[4, 1]` to equal 8.74310154. Differences: `actual`: 7.3 `expected`: 8.7 ── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ── Expected `val[10]` to equal 5.031225. Differences: `actual`: 5.067 `expected`: 5.031 [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.2.4
Check: tests
Result: ERROR Running ‘testthat.R’ [145s/444s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(GPCERF) > > test_check("GPCERF") 2025-12-26 22:49:08.4103 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ... Loading required package: nnls Saving _problems/test-compute_deriv_nn-21.R 2025-12-26 22:49:24.530401 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_deriv_weights_gp-17.R 2025-12-26 22:49:36.110408 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_m_sigma-32.R 2025-12-26 22:50:02.79345 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-26 22:50:13.784366 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-26 22:50:28.8768 gannet.stats.ox.ac.uk 622140 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=627396 on localhost:11507 at 22:50:29.471 2025-12-26 22:50:42.152785 gannet.stats.ox.ac.uk 622140 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 13.276 s. 2025-12-26 22:50:42.419077 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-26 22:50:55.679208 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-26 22:51:07.701552 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_weight_gp-49.R 2025-12-26 22:51:19.569707 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-26 22:51:32.756306 gannet.stats.ox.ac.uk 622140 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24 2025-12-26 22:51:44.448699 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-26 22:51:52.77544 gannet.stats.ox.ac.uk 622140 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24 2025-12-26 22:51:52.858649 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-26 22:52:08.270106 gannet.stats.ox.ac.uk 622140 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24 2025-12-26 22:52:08.316254 gannet.stats.ox.ac.uk 622140 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24 2025-12-26 22:52:08.35639 gannet.stats.ox.ac.uk 622140 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24 2025-12-26 22:52:08.396866 gannet.stats.ox.ac.uk 622140 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24 2025-12-26 22:52:08.467737 gannet.stats.ox.ac.uk 622140 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24 2025-12-26 22:52:08.497675 gannet.stats.ox.ac.uk 622140 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24 2025-12-26 22:52:08.565941 gannet.stats.ox.ac.uk 622140 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24 2025-12-26 22:52:08.646268 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-26 22:52:23.496615 gannet.stats.ox.ac.uk 622140 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24 starting worker pid=634692 on localhost:11507 at 22:52:24.242 starting worker pid=634693 on localhost:11507 at 22:52:24.504 2025-12-26 22:52:53.845146 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-26 22:53:06.752936 gannet.stats.ox.ac.uk 622140 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24 2025-12-26 22:53:06.782396 gannet.stats.ox.ac.uk 622140 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-26 22:53:06.811966 gannet.stats.ox.ac.uk 622140 GPCERF find_optimal_nn INFO: Started finding optimal values ... starting worker pid=636813 on localhost:11507 at 22:53:07.285 2025-12-26 22:53:21.398103 gannet.stats.ox.ac.uk 622140 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 14.574 s.} ... 2025-12-26 22:53:21.406602 gannet.stats.ox.ac.uk 622140 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=637217 on localhost:11507 at 22:53:22.280 2025-12-26 22:53:37.428914 gannet.stats.ox.ac.uk 622140 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 16.022 s. 2025-12-26 22:53:37.437695 gannet.stats.ox.ac.uk 622140 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ... starting worker pid=637846 on localhost:11507 at 22:53:38.437 2025-12-26 22:53:57.123574 gannet.stats.ox.ac.uk 622140 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 19.686 s. 2025-12-26 22:53:57.131742 gannet.stats.ox.ac.uk 622140 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 50.349 s. 2025-12-26 22:53:57.153689 gannet.stats.ox.ac.uk 622140 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24 2025-12-26 22:53:57.198775 gannet.stats.ox.ac.uk 622140 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-26 22:53:57.281587 gannet.stats.ox.ac.uk 622140 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24 2025-12-26 22:53:57.322799 gannet.stats.ox.ac.uk 622140 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-26 22:53:57.656408 gannet.stats.ox.ac.uk 622140 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24 2025-12-26 22:53:57.698889 gannet.stats.ox.ac.uk 622140 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-26 22:53:57.784009 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-26 22:54:06.698689 gannet.stats.ox.ac.uk 622140 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24 2025-12-26 22:54:06.728137 gannet.stats.ox.ac.uk 622140 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-26 22:54:06.801253 gannet.stats.ox.ac.uk 622140 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24 2025-12-26 22:54:06.836365 gannet.stats.ox.ac.uk 622140 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-26 22:54:07.032869 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-estimate_gps-15.R 2025-12-26 22:54:16.907442 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-26 22:54:33.277739 gannet.stats.ox.ac.uk 622140 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=639666 on localhost:11507 at 22:54:34.444 2025-12-26 22:54:47.260752 gannet.stats.ox.ac.uk 622140 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 13.9829999999999 s. 2025-12-26 22:54:47.276225 gannet.stats.ox.ac.uk 622140 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ... starting worker pid=639896 on localhost:11507 at 22:54:48.609 2025-12-26 22:55:04.743584 gannet.stats.ox.ac.uk 622140 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 17.467 s. Saving _problems/test-estimate_mean_sd_nn-37.R 2025-12-26 22:55:05.118037 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-26 22:55:16.083339 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-26 22:55:33.816705 gannet.stats.ox.ac.uk 622140 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=641447 on localhost:11507 at 22:55:35.264 2025-12-26 22:55:46.365098 gannet.stats.ox.ac.uk 622140 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 12.548 s. 2025-12-26 22:55:46.506912 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-26 22:55:57.147409 gannet.stats.ox.ac.uk 622140 GPCERF find_optimal_nn INFO: Started finding optimal values ... starting worker pid=642520 on localhost:11507 at 22:55:58.115 2025-12-26 22:56:13.640608 gannet.stats.ox.ac.uk 622140 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 16.49 s.} ... [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ── Expected `deriv_val[1, 1]` to equal 1.558466. Differences: `actual`: -1.0 `expected`: 1.6 ── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ── Expected `weights[37]` to equal 3.307249e-05. Differences: `actual`: -0.00011 `expected`: 0.00003 ── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ── Expected `gp_cerf[10]` to equal 2.105425. Differences: `actual`: -6.1 `expected`: 2.1 ── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ───────────── Expected `weight$weight[28]` to equal 0.0002182767. Differences: `actual`: 0.00000 `expected`: 0.00022 ── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ─────── Expected `gps_m$gps[4, 1]` to equal 8.74310154. Differences: `actual`: 7.3 `expected`: 8.7 ── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ── Expected `val[10]` to equal 5.031225. Differences: `actual`: 5.067 `expected`: 5.031 [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.2.4
Check: tests
Result: ERROR Running ‘testthat.R’ [81s/120s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(GPCERF) > > test_check("GPCERF") 2025-12-26 21:33:55.840385 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ... Loading required package: nnls Saving _problems/test-compute_deriv_nn-21.R 2025-12-26 21:34:00.052228 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_deriv_weights_gp-17.R 2025-12-26 21:34:03.902132 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_m_sigma-32.R 2025-12-26 21:34:10.884909 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-26 21:34:14.564908 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-26 21:34:18.318578 gannet.stats.ox.ac.uk 351565 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=352362 on localhost:11272 at 21:34:18.559 2025-12-26 21:34:21.898304 gannet.stats.ox.ac.uk 351565 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.58 s. 2025-12-26 21:34:21.977029 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-26 21:34:25.689109 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-26 21:34:29.421248 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_weight_gp-49.R 2025-12-26 21:34:33.276237 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-26 21:34:36.881544 gannet.stats.ox.ac.uk 351565 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24 2025-12-26 21:34:39.945741 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-26 21:34:42.519772 gannet.stats.ox.ac.uk 351565 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24 2025-12-26 21:34:42.572495 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-26 21:34:46.183951 gannet.stats.ox.ac.uk 351565 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24 2025-12-26 21:34:46.20463 gannet.stats.ox.ac.uk 351565 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24 2025-12-26 21:34:46.224972 gannet.stats.ox.ac.uk 351565 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24 2025-12-26 21:34:46.288745 gannet.stats.ox.ac.uk 351565 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24 2025-12-26 21:34:46.307164 gannet.stats.ox.ac.uk 351565 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24 2025-12-26 21:34:46.337418 gannet.stats.ox.ac.uk 351565 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24 2025-12-26 21:34:46.356911 gannet.stats.ox.ac.uk 351565 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24 2025-12-26 21:34:46.390907 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-26 21:34:50.330351 gannet.stats.ox.ac.uk 351565 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24 starting worker pid=353309 on localhost:11272 at 21:34:50.585 starting worker pid=353308 on localhost:11272 at 21:34:50.695 2025-12-26 21:34:59.152366 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-26 21:35:02.81662 gannet.stats.ox.ac.uk 351565 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24 2025-12-26 21:35:02.825443 gannet.stats.ox.ac.uk 351565 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-26 21:35:02.829801 gannet.stats.ox.ac.uk 351565 GPCERF find_optimal_nn INFO: Started finding optimal values ... starting worker pid=353684 on localhost:11272 at 21:35:03.055 2025-12-26 21:35:06.872823 gannet.stats.ox.ac.uk 351565 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 4.04100000000001 s.} ... 2025-12-26 21:35:06.876792 gannet.stats.ox.ac.uk 351565 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=354064 on localhost:11272 at 21:35:07.102 2025-12-26 21:35:10.378599 gannet.stats.ox.ac.uk 351565 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.50200000000001 s. 2025-12-26 21:35:10.382573 gannet.stats.ox.ac.uk 351565 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ... starting worker pid=354193 on localhost:11272 at 21:35:10.607 2025-12-26 21:35:14.844632 gannet.stats.ox.ac.uk 351565 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 4.462 s. 2025-12-26 21:35:14.847958 gannet.stats.ox.ac.uk 351565 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 12.022 s. 2025-12-26 21:35:14.854364 gannet.stats.ox.ac.uk 351565 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24 2025-12-26 21:35:14.864361 gannet.stats.ox.ac.uk 351565 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-26 21:35:14.888284 gannet.stats.ox.ac.uk 351565 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24 2025-12-26 21:35:14.898342 gannet.stats.ox.ac.uk 351565 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-26 21:35:14.948302 gannet.stats.ox.ac.uk 351565 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24 2025-12-26 21:35:14.957616 gannet.stats.ox.ac.uk 351565 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-26 21:35:14.969902 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-26 21:35:17.484851 gannet.stats.ox.ac.uk 351565 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24 2025-12-26 21:35:17.498242 gannet.stats.ox.ac.uk 351565 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-26 21:35:17.542117 gannet.stats.ox.ac.uk 351565 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24 2025-12-26 21:35:17.554885 gannet.stats.ox.ac.uk 351565 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-26 21:35:17.594354 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-estimate_gps-15.R 2025-12-26 21:35:21.310148 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-26 21:35:24.969155 gannet.stats.ox.ac.uk 351565 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=354405 on localhost:11272 at 21:35:25.203 2025-12-26 21:35:28.587647 gannet.stats.ox.ac.uk 351565 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.61799999999999 s. 2025-12-26 21:35:28.589926 gannet.stats.ox.ac.uk 351565 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ... starting worker pid=354464 on localhost:11272 at 21:35:28.817 2025-12-26 21:35:32.682988 gannet.stats.ox.ac.uk 351565 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 4.093 s. Saving _problems/test-estimate_mean_sd_nn-37.R 2025-12-26 21:35:32.749885 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-26 21:35:35.317426 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-26 21:35:38.918335 gannet.stats.ox.ac.uk 351565 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=354731 on localhost:11272 at 21:35:39.219 2025-12-26 21:35:42.573676 gannet.stats.ox.ac.uk 351565 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.655 s. 2025-12-26 21:35:42.60984 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-26 21:35:46.405771 gannet.stats.ox.ac.uk 351565 GPCERF find_optimal_nn INFO: Started finding optimal values ... starting worker pid=354905 on localhost:11272 at 21:35:46.642 2025-12-26 21:35:51.242068 gannet.stats.ox.ac.uk 351565 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 4.833 s.} ... [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ── Expected `deriv_val[1, 1]` to equal 1.558466. Differences: `actual`: -1.0 `expected`: 1.6 ── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ── Expected `weights[37]` to equal 3.307249e-05. Differences: `actual`: -0.00011 `expected`: 0.00003 ── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ── Expected `gp_cerf[10]` to equal 2.105425. Differences: `actual`: -6.1 `expected`: 2.1 ── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ───────────── Expected `weight$weight[28]` to equal 0.0002182767. Differences: `actual`: 0.00000 `expected`: 0.00022 ── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ─────── Expected `gps_m$gps[4, 1]` to equal 8.74310154. Differences: `actual`: 7.3 `expected`: 8.7 ── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ── Expected `val[10]` to equal 5.031225. Differences: `actual`: 5.067 `expected`: 5.031 [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.2.4
Check: tests
Result: ERROR Running 'testthat.R' [140s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(GPCERF) > > test_check("GPCERF") 2025-12-24 08:23:44.583427 CRANWIN3 44776 GPCERF estimate_gps INFO: Started estimating GPS values ... Loading required package: nnls Saving _problems/test-compute_deriv_nn-21.R 2025-12-24 08:23:50.820481 CRANWIN3 44776 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_deriv_weights_gp-17.R 2025-12-24 08:23:56.062171 CRANWIN3 44776 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_m_sigma-32.R 2025-12-24 08:24:04.752172 CRANWIN3 44776 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-24 08:24:09.930307 CRANWIN3 44776 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-24 08:24:15.496121 CRANWIN3 44776 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=48452 on localhost:11262 at 08:24:15.783 2025-12-24 08:24:18.530537 CRANWIN3 44776 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.05 s. 2025-12-24 08:24:18.580364 CRANWIN3 44776 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-24 08:24:23.505547 CRANWIN3 44776 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-24 08:24:28.677678 CRANWIN3 44776 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_weight_gp-49.R 2025-12-24 08:24:34.192495 CRANWIN3 44776 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-24 08:24:39.507793 CRANWIN3 44776 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-23 r89222 ucrt), detected cores: 96 2025-12-24 08:24:43.075487 CRANWIN3 44776 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-24 08:24:47.013037 CRANWIN3 44776 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-23 r89222 ucrt), detected cores: 96 2025-12-24 08:24:47.023463 CRANWIN3 44776 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-24 08:24:52.121191 CRANWIN3 44776 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-23 r89222 ucrt), detected cores: 96 2025-12-24 08:24:52.132376 CRANWIN3 44776 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-23 r89222 ucrt), detected cores: 96 2025-12-24 08:24:52.142998 CRANWIN3 44776 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-23 r89222 ucrt), detected cores: 96 2025-12-24 08:24:52.153199 CRANWIN3 44776 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-23 r89222 ucrt), detected cores: 96 2025-12-24 08:24:52.166621 CRANWIN3 44776 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-23 r89222 ucrt), detected cores: 96 2025-12-24 08:24:52.179973 CRANWIN3 44776 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-23 r89222 ucrt), detected cores: 96 2025-12-24 08:24:52.194741 CRANWIN3 44776 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-23 r89222 ucrt), detected cores: 96 2025-12-24 08:24:52.210753 CRANWIN3 44776 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-24 08:24:57.532299 CRANWIN3 44776 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-23 r89222 ucrt), detected cores: 96 starting worker pid=78984 on localhost:11262 at 08:24:57.766 starting worker pid=95900 on localhost:11262 at 08:24:57.804 2025-12-24 08:25:04.424629 CRANWIN3 44776 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-24 08:25:09.56279 CRANWIN3 44776 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-23 r89222 ucrt), detected cores: 96 2025-12-24 08:25:09.565193 CRANWIN3 44776 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-24 08:25:09.568697 CRANWIN3 44776 GPCERF find_optimal_nn INFO: Started finding optimal values ... starting worker pid=42840 on localhost:11262 at 08:25:09.832 2025-12-24 08:25:12.558002 CRANWIN3 44776 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 2.98 s.} ... 2025-12-24 08:25:12.560803 CRANWIN3 44776 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=70424 on localhost:11262 at 08:25:12.836 2025-12-24 08:25:15.478562 CRANWIN3 44776 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.91999999999999 s. 2025-12-24 08:25:15.481582 CRANWIN3 44776 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ... starting worker pid=17620 on localhost:11262 at 08:25:15.771 2025-12-24 08:25:18.956897 CRANWIN3 44776 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.49000000000001 s. 2025-12-24 08:25:18.959045 CRANWIN3 44776 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 9.39 s. 2025-12-24 08:25:18.963453 CRANWIN3 44776 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-23 r89222 ucrt), detected cores: 96 2025-12-24 08:25:18.966202 CRANWIN3 44776 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-24 08:25:18.97874 CRANWIN3 44776 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-23 r89222 ucrt), detected cores: 96 2025-12-24 08:25:18.981094 CRANWIN3 44776 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-24 08:25:19.012048 CRANWIN3 44776 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-23 r89222 ucrt), detected cores: 96 2025-12-24 08:25:19.015071 CRANWIN3 44776 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-24 08:25:19.027186 CRANWIN3 44776 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-24 08:25:23.173699 CRANWIN3 44776 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-23 r89222 ucrt), detected cores: 96 2025-12-24 08:25:23.176459 CRANWIN3 44776 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-24 08:25:23.187347 CRANWIN3 44776 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-23 r89222 ucrt), detected cores: 96 2025-12-24 08:25:23.189904 CRANWIN3 44776 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-24 08:25:23.219818 CRANWIN3 44776 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-estimate_gps-15.R 2025-12-24 08:25:28.593264 CRANWIN3 44776 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-24 08:25:33.897099 CRANWIN3 44776 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=28788 on localhost:11262 at 08:25:34.153 2025-12-24 08:25:36.741491 CRANWIN3 44776 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.84 s. 2025-12-24 08:25:36.744003 CRANWIN3 44776 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ... starting worker pid=57056 on localhost:11262 at 08:25:37.016 2025-12-24 08:25:39.782975 CRANWIN3 44776 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.03 s. Saving _problems/test-estimate_mean_sd_nn-37.R 2025-12-24 08:25:39.841782 CRANWIN3 44776 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-24 08:25:44.251334 CRANWIN3 44776 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-24 08:25:49.646608 CRANWIN3 44776 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=48944 on localhost:11262 at 08:25:49.904 2025-12-24 08:25:52.504922 CRANWIN3 44776 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.84 s. 2025-12-24 08:25:52.539693 CRANWIN3 44776 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-24 08:25:57.664612 CRANWIN3 44776 GPCERF find_optimal_nn INFO: Started finding optimal values ... starting worker pid=21756 on localhost:11262 at 08:25:57.917 2025-12-24 08:26:01.239586 CRANWIN3 44776 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 3.56 s.} ... [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ── Expected `deriv_val[1, 1]` to equal 1.558466. Differences: `actual`: -1.0 `expected`: 1.6 ── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ── Expected `weights[37]` to equal 3.307249e-05. Differences: `actual`: -0.00011 `expected`: 0.00003 ── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ── Expected `gp_cerf[10]` to equal 2.105425. Differences: `actual`: -6.1 `expected`: 2.1 ── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ───────────── Expected `weight$weight[28]` to equal 0.0002182767. Differences: `actual`: 0.00000 `expected`: 0.00022 ── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ─────── Expected `gps_m$gps[4, 1]` to equal 8.74310154. Differences: `actual`: 7.3 `expected`: 8.7 ── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ── Expected `val[10]` to equal 5.031225. Differences: `actual`: 5.067 `expected`: 5.031 [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ] Error: ! Test failures. Execution halted Flavor: r-devel-windows-x86_64

Version: 0.2.4
Check: tests
Result: ERROR Running ‘testthat.R’ [85s/154s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(GPCERF) > > test_check("GPCERF") 2025-12-24 05:56:02.233677 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ... Loading required package: nnls Saving _problems/test-compute_deriv_nn-21.R 2025-12-24 05:56:09.007578 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_deriv_weights_gp-17.R 2025-12-24 05:56:14.153259 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_m_sigma-32.R 2025-12-24 05:56:22.844967 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-24 05:56:27.920341 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-24 05:56:32.622691 gimli2 1420650 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=1431728 on localhost:11719 at 05:56:32.991 2025-12-24 05:56:36.649458 gimli2 1420650 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.027 s. 2025-12-24 05:56:36.737625 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-24 05:56:41.547067 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-24 05:56:46.629246 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_weight_gp-49.R 2025-12-24 05:56:51.321513 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-24 05:56:56.117462 gimli2 1420650 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-21 r89220), detected cores: 32 2025-12-24 05:56:59.477813 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-24 05:57:02.702593 gimli2 1420650 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-21 r89220), detected cores: 32 2025-12-24 05:57:02.738006 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-24 05:57:07.60434 gimli2 1420650 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-21 r89220), detected cores: 32 2025-12-24 05:57:07.632369 gimli2 1420650 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-21 r89220), detected cores: 32 2025-12-24 05:57:07.668262 gimli2 1420650 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-21 r89220), detected cores: 32 2025-12-24 05:57:07.710548 gimli2 1420650 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-21 r89220), detected cores: 32 2025-12-24 05:57:07.746562 gimli2 1420650 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-21 r89220), detected cores: 32 2025-12-24 05:57:07.768637 gimli2 1420650 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-21 r89220), detected cores: 32 2025-12-24 05:57:07.805045 gimli2 1420650 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-21 r89220), detected cores: 32 2025-12-24 05:57:07.833274 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-24 05:57:12.652657 gimli2 1420650 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-21 r89220), detected cores: 32 starting worker pid=1442145 on localhost:11719 at 05:57:13.073 starting worker pid=1442146 on localhost:11719 at 05:57:13.094 2025-12-24 05:57:20.96564 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-24 05:57:26.27615 gimli2 1420650 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-21 r89220), detected cores: 32 2025-12-24 05:57:26.283433 gimli2 1420650 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-24 05:57:26.287799 gimli2 1420650 GPCERF find_optimal_nn INFO: Started finding optimal values ... starting worker pid=1445237 on localhost:11719 at 05:57:26.636 2025-12-24 05:57:31.265884 gimli2 1420650 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 4.976 s.} ... 2025-12-24 05:57:31.268247 gimli2 1420650 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=1447064 on localhost:11719 at 05:57:31.653 2025-12-24 05:57:35.08694 gimli2 1420650 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.818 s. 2025-12-24 05:57:35.089378 gimli2 1420650 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ... starting worker pid=1448188 on localhost:11719 at 05:57:35.553 2025-12-24 05:57:40.709281 gimli2 1420650 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 5.61999999999999 s. 2025-12-24 05:57:40.717003 gimli2 1420650 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 14.428 s. 2025-12-24 05:57:40.726354 gimli2 1420650 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-21 r89220), detected cores: 32 2025-12-24 05:57:40.737785 gimli2 1420650 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-24 05:57:40.777482 gimli2 1420650 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-21 r89220), detected cores: 32 2025-12-24 05:57:40.791359 gimli2 1420650 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-24 05:57:40.862303 gimli2 1420650 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-21 r89220), detected cores: 32 2025-12-24 05:57:40.873276 gimli2 1420650 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-24 05:57:40.902886 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-24 05:57:44.789201 gimli2 1420650 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-21 r89220), detected cores: 32 2025-12-24 05:57:44.801359 gimli2 1420650 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-24 05:57:44.827223 gimli2 1420650 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-21 r89220), detected cores: 32 2025-12-24 05:57:44.839198 gimli2 1420650 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-24 05:57:44.902013 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-estimate_gps-15.R 2025-12-24 05:57:50.86983 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-24 05:57:55.766333 gimli2 1420650 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=1452950 on localhost:11719 at 05:57:56.305 2025-12-24 05:58:00.225276 gimli2 1420650 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.459 s. 2025-12-24 05:58:00.227682 gimli2 1420650 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ... starting worker pid=1454140 on localhost:11719 at 05:58:00.569 2025-12-24 05:58:05.400198 gimli2 1420650 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 5.173 s. Saving _problems/test-estimate_mean_sd_nn-37.R 2025-12-24 05:58:05.539531 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-24 05:58:09.266581 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-24 05:58:13.639235 gimli2 1420650 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=1457585 on localhost:11719 at 05:58:14.165 2025-12-24 05:58:17.747804 gimli2 1420650 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.108 s. 2025-12-24 05:58:17.796478 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-24 05:58:23.435733 gimli2 1420650 GPCERF find_optimal_nn INFO: Started finding optimal values ... starting worker pid=1461182 on localhost:11719 at 05:58:23.837 2025-12-24 05:58:29.551028 gimli2 1420650 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 6.11199999999999 s.} ... [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ── Expected `deriv_val[1, 1]` to equal 1.558466. Differences: `actual`: -1.0 `expected`: 1.6 ── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ── Expected `weights[37]` to equal 3.307249e-05. Differences: `actual`: -0.00011 `expected`: 0.00003 ── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ── Expected `gp_cerf[10]` to equal 2.105425. Differences: `actual`: -6.1 `expected`: 2.1 ── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ───────────── Expected `weight$weight[28]` to equal 0.0002182767. Differences: `actual`: 0.00000 `expected`: 0.00022 ── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ─────── Expected `gps_m$gps[4, 1]` to equal 8.74310154. Differences: `actual`: 7.3 `expected`: 8.7 ── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ── Expected `val[10]` to equal 5.031225. Differences: `actual`: 5.067 `expected`: 5.031 [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ] Error: ! Test failures. Execution halted Flavor: r-patched-linux-x86_64

Version: 0.2.4
Check: tests
Result: ERROR Running ‘testthat.R’ [27s/34s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(GPCERF) > > test_check("GPCERF") 2025-12-13 05:44:57.923033 gimli2 260556 GPCERF estimate_gps INFO: Started estimating GPS values ... Loading required package: nnls Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Saving _problems/test-compute_deriv_nn-8.R 2025-12-13 05:45:00.416523 gimli2 260556 GPCERF estimate_gps INFO: Started estimating GPS values ... Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Saving _problems/test-compute_deriv_weights_gp-8.R 2025-12-13 05:45:01.93277 gimli2 260556 GPCERF estimate_gps INFO: Started estimating GPS values ... Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Saving _problems/test-compute_m_sigma-12.R 2025-12-13 05:45:03.526912 gimli2 260556 GPCERF estimate_gps INFO: Started estimating GPS values ... Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Saving _problems/test-compute_posterior_m_nn-10.R 2025-12-13 05:45:05.100099 gimli2 260556 GPCERF estimate_gps INFO: Started estimating GPS values ... Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Saving _problems/test-compute_posterior_sd_nn-10.R 2025-12-13 05:45:06.917073 gimli2 260556 GPCERF estimate_gps INFO: Started estimating GPS values ... Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Saving _problems/test-compute_rl_deriv_gp-8.R 2025-12-13 05:45:08.314523 gimli2 260556 GPCERF estimate_gps INFO: Started estimating GPS values ... Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Saving _problems/test-compute_rl_deriv_nn-8.R 2025-12-13 05:45:09.767577 gimli2 260556 GPCERF estimate_gps INFO: Started estimating GPS values ... Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Saving _problems/test-compute_sd_gp-17.R Saving _problems/test-compute_weight_gp-49.R 2025-12-13 05:45:13.986624 gimli2 260556 GPCERF estimate_gps INFO: Started estimating GPS values ... Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Saving _problems/test-estimate_cerf_gp-10.R 2025-12-13 05:45:15.681828 gimli2 260556 GPCERF estimate_gps INFO: Started estimating GPS values ... Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Saving _problems/test-estimate_cerf_nngp-10.R 2025-12-13 05:45:17.029967 gimli2 260556 GPCERF estimate_gps INFO: Started estimating GPS values ... Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Saving _problems/test-estimate_gps-10.R 2025-12-13 05:45:18.675501 gimli2 260556 GPCERF estimate_gps INFO: Started estimating GPS values ... Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Saving _problems/test-estimate_mean_sd_nn-10.R 2025-12-13 05:45:20.369581 gimli2 260556 GPCERF estimate_gps INFO: Started estimating GPS values ... Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Saving _problems/test-estimate_noise_gp-11.R 2025-12-13 05:45:22.178111 gimli2 260556 GPCERF estimate_gps INFO: Started estimating GPS values ... Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Saving _problems/test-estimate_noise_nn-10.R 2025-12-13 05:45:24.016171 gimli2 260556 GPCERF estimate_gps INFO: Started estimating GPS values ... Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Error in xgboost::xgboost(data = xgmat, objective = objective, nrounds = ntrees, : argument "y" is missing, with no default Saving _problems/test-find_optimal_nn-9.R [ FAIL 16 | WARN 752 | SKIP 0 | PASS 45 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-compute_deriv_nn.R:5:3'): compute_deriv_nn works as expected! ── Error in `SuperLearner::SuperLearner(Y = w_all, X = as.data.frame(cov_mt), SL.library = sl_lib)`: All algorithms dropped from library Backtrace: ▆ 1. └─GPCERF::estimate_gps(...) at test-compute_deriv_nn.R:5:3 2. └─SuperLearner::SuperLearner(...) ── Error ('test-compute_deriv_weights_gp.R:5:3'): compute_deriv_weights_gp works as expected! ── Error in `SuperLearner::SuperLearner(Y = w_all, X = as.data.frame(cov_mt), SL.library = sl_lib)`: All algorithms dropped from library Backtrace: ▆ 1. └─GPCERF::estimate_gps(...) at test-compute_deriv_weights_gp.R:5:3 2. └─SuperLearner::SuperLearner(...) ── Error ('test-compute_m_sigma.R:9:4'): compute_m_sigma works as expected! ──── Error in `SuperLearner::SuperLearner(Y = w_all, X = as.data.frame(cov_mt), SL.library = sl_lib)`: All algorithms dropped from library Backtrace: ▆ 1. └─GPCERF::estimate_gps(...) at test-compute_m_sigma.R:9:4 2. └─SuperLearner::SuperLearner(...) ── Error ('test-compute_posterior_m_nn.R:7:3'): compute_posterior_m_nn works as expected. ── Error in `SuperLearner::SuperLearner(Y = w_all, X = as.data.frame(cov_mt), SL.library = sl_lib)`: All algorithms dropped from library Backtrace: ▆ 1. └─GPCERF::estimate_gps(...) at test-compute_posterior_m_nn.R:7:3 2. └─SuperLearner::SuperLearner(...) ── Error ('test-compute_posterior_sd_nn.R:7:3'): compute_posterior_sd_nn works as expected. ── Error in `SuperLearner::SuperLearner(Y = w_all, X = as.data.frame(cov_mt), SL.library = sl_lib)`: All algorithms dropped from library Backtrace: ▆ 1. └─GPCERF::estimate_gps(...) at test-compute_posterior_sd_nn.R:7:3 2. └─SuperLearner::SuperLearner(...) ── Error ('test-compute_rl_deriv_gp.R:5:3'): compute_rl_deriv_gp works as expected! ── Error in `SuperLearner::SuperLearner(Y = w_all, X = as.data.frame(cov_mt), SL.library = sl_lib)`: All algorithms dropped from library Backtrace: ▆ 1. └─GPCERF::estimate_gps(...) at test-compute_rl_deriv_gp.R:5:3 2. └─SuperLearner::SuperLearner(...) ── Error ('test-compute_rl_deriv_nn.R:5:3'): compute_rl_deriv_nn works as expected! ── Error in `SuperLearner::SuperLearner(Y = w_all, X = as.data.frame(cov_mt), SL.library = sl_lib)`: All algorithms dropped from library Backtrace: ▆ 1. └─GPCERF::estimate_gps(...) at test-compute_rl_deriv_nn.R:5:3 2. └─SuperLearner::SuperLearner(...) ── Error ('test-compute_sd_gp.R:14:4'): compute_sd_gp works as expected. ─────── Error in `SuperLearner::SuperLearner(Y = w_all, X = as.data.frame(cov_mt), SL.library = sl_lib)`: All algorithms dropped from library Backtrace: ▆ 1. └─GPCERF::estimate_gps(...) at test-compute_sd_gp.R:14:4 2. └─SuperLearner::SuperLearner(...) ── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ───────────── Expected `weight$weight[28]` to equal 0.0002182767. Differences: `actual`: 0.00000 `expected`: 0.00022 ── Error ('test-estimate_cerf_gp.R:7:3'): estimate_cerf_gp works as expected! ── Error in `SuperLearner::SuperLearner(Y = w_all, X = as.data.frame(cov_mt), SL.library = sl_lib)`: All algorithms dropped from library Backtrace: ▆ 1. └─GPCERF::estimate_gps(...) at test-estimate_cerf_gp.R:7:3 2. └─SuperLearner::SuperLearner(...) ── Error ('test-estimate_cerf_nngp.R:7:3'): estimate_cerf_nngp works as expected! ── Error in `SuperLearner::SuperLearner(Y = w_all, X = as.data.frame(cov_mt), SL.library = sl_lib)`: All algorithms dropped from library Backtrace: ▆ 1. └─GPCERF::estimate_gps(...) at test-estimate_cerf_nngp.R:7:3 2. └─SuperLearner::SuperLearner(...) ── Error ('test-estimate_gps.R:7:3'): estimate_gps works as expected. ────────── Error in `SuperLearner::SuperLearner(Y = w_all, X = as.data.frame(cov_mt), SL.library = sl_lib)`: All algorithms dropped from library Backtrace: ▆ 1. └─GPCERF::estimate_gps(...) at test-estimate_gps.R:7:3 2. └─SuperLearner::SuperLearner(...) ── Error ('test-estimate_mean_sd_nn.R:7:3'): estimate_mean_sd_nn works as expected! ── Error in `SuperLearner::SuperLearner(Y = w_all, X = as.data.frame(cov_mt), SL.library = sl_lib)`: All algorithms dropped from library Backtrace: ▆ 1. └─GPCERF::estimate_gps(...) at test-estimate_mean_sd_nn.R:7:3 2. └─SuperLearner::SuperLearner(...) ── Error ('test-estimate_noise_gp.R:8:3'): estimate_noise_gp works as expected ── Error in `SuperLearner::SuperLearner(Y = w_all, X = as.data.frame(cov_mt), SL.library = sl_lib)`: All algorithms dropped from library Backtrace: ▆ 1. └─GPCERF::estimate_gps(...) at test-estimate_noise_gp.R:8:3 2. └─SuperLearner::SuperLearner(...) ── Error ('test-estimate_noise_nn.R:7:3'): estimate_noise_nn works as expected! ── Error in `SuperLearner::SuperLearner(Y = w_all, X = as.data.frame(cov_mt), SL.library = sl_lib)`: All algorithms dropped from library Backtrace: ▆ 1. └─GPCERF::estimate_gps(...) at test-estimate_noise_nn.R:7:3 2. └─SuperLearner::SuperLearner(...) ── Error ('test-find_optimal_nn.R:6:3'): find_optimal_nn works as expected! ──── Error in `SuperLearner::SuperLearner(Y = w_all, X = as.data.frame(cov_mt), SL.library = sl_lib)`: All algorithms dropped from library Backtrace: ▆ 1. └─GPCERF::estimate_gps(...) at test-find_optimal_nn.R:6:3 2. └─SuperLearner::SuperLearner(...) [ FAIL 16 | WARN 752 | SKIP 0 | PASS 45 ] Error: ! Test failures. Execution halted Flavor: r-release-linux-x86_64

Version: 0.2.4
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘A-Note-on-Choosing-Hyperparameters.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘A-Note-on-Choosing-Hyperparameters.Rmd’ --- re-building ‘Developers-Guide.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘Developers-Guide.Rmd’ --- re-building ‘GPCERF.Rmd’ using rmarkdown 2025-12-13 05:45:38.029637 gimli2 274017 GPCERF estimate_gps INFO: Started estimating GPS values ... Quitting from GPCERF.Rmd:38-45 [unnamed-chunk-4] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `SuperLearner::SuperLearner()`: ! All algorithms dropped from library --- Backtrace: ▆ 1. └─GPCERF::estimate_gps(...) 2. └─SuperLearner::SuperLearner(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'GPCERF.Rmd' failed with diagnostics: All algorithms dropped from library --- failed re-building ‘GPCERF.Rmd’ --- re-building ‘Nearest-neighbor-Gaussian-Processes.Rmd’ using rmarkdown 2025-12-13 05:45:48.80051 gimli2 275346 GPCERF estimate_gps INFO: Started estimating GPS values ... Quitting from Nearest-neighbor-Gaussian-Processes.Rmd:83-92 [unnamed-chunk-4] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `SuperLearner::SuperLearner()`: ! All algorithms dropped from library --- Backtrace: ▆ 1. └─GPCERF::estimate_gps(...) 2. └─SuperLearner::SuperLearner(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Nearest-neighbor-Gaussian-Processes.Rmd' failed with diagnostics: All algorithms dropped from library --- failed re-building ‘Nearest-neighbor-Gaussian-Processes.Rmd’ --- re-building ‘Standard-Gaussian-Processes.Rmd’ using rmarkdown 2025-12-13 05:45:58.960181 gimli2 277514 GPCERF estimate_gps INFO: Started estimating GPS values ... Quitting from Standard-Gaussian-Processes.Rmd:83-93 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `SuperLearner::SuperLearner()`: ! All algorithms dropped from library --- Backtrace: ▆ 1. └─GPCERF::estimate_gps(...) 2. └─SuperLearner::SuperLearner(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Standard-Gaussian-Processes.Rmd' failed with diagnostics: All algorithms dropped from library --- failed re-building ‘Standard-Gaussian-Processes.Rmd’ SUMMARY: processing the following files failed: ‘GPCERF.Rmd’ ‘Nearest-neighbor-Gaussian-Processes.Rmd’ ‘Standard-Gaussian-Processes.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-release-linux-x86_64

Version: 0.2.4
Check: tests
Result: ERROR Running 'testthat.R' [138s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(GPCERF) > > test_check("GPCERF") 2025-12-25 08:33:01.199294 CRANWIN3 60212 GPCERF estimate_gps INFO: Started estimating GPS values ... Loading required package: nnls Saving _problems/test-compute_deriv_nn-21.R 2025-12-25 08:33:07.024539 CRANWIN3 60212 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_deriv_weights_gp-17.R 2025-12-25 08:33:11.937008 CRANWIN3 60212 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_m_sigma-32.R 2025-12-25 08:33:20.064465 CRANWIN3 60212 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-25 08:33:25.342083 CRANWIN3 60212 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-25 08:33:31.009512 CRANWIN3 60212 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=44352 on localhost:11114 at 08:33:31.289 2025-12-25 08:33:33.847124 CRANWIN3 60212 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.84 s. 2025-12-25 08:33:33.892778 CRANWIN3 60212 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-25 08:33:39.233466 CRANWIN3 60212 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-25 08:33:44.455128 CRANWIN3 60212 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_weight_gp-49.R 2025-12-25 08:33:49.202268 CRANWIN3 60212 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-25 08:33:54.554352 CRANWIN3 60212 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96 2025-12-25 08:33:58.291519 CRANWIN3 60212 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-25 08:34:02.531434 CRANWIN3 60212 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96 2025-12-25 08:34:02.546589 CRANWIN3 60212 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-25 08:34:07.476551 CRANWIN3 60212 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96 2025-12-25 08:34:07.489989 CRANWIN3 60212 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96 2025-12-25 08:34:07.503764 CRANWIN3 60212 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96 2025-12-25 08:34:07.517425 CRANWIN3 60212 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96 2025-12-25 08:34:07.530628 CRANWIN3 60212 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96 2025-12-25 08:34:07.544543 CRANWIN3 60212 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96 2025-12-25 08:34:07.557938 CRANWIN3 60212 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96 2025-12-25 08:34:07.572853 CRANWIN3 60212 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-25 08:34:12.581795 CRANWIN3 60212 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96 starting worker pid=5404 on localhost:11114 at 08:34:12.822 starting worker pid=57236 on localhost:11114 at 08:34:12.822 2025-12-25 08:34:19.355519 CRANWIN3 60212 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-25 08:34:24.377593 CRANWIN3 60212 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96 2025-12-25 08:34:24.37955 CRANWIN3 60212 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-25 08:34:24.382322 CRANWIN3 60212 GPCERF find_optimal_nn INFO: Started finding optimal values ... starting worker pid=9780 on localhost:11114 at 08:34:24.588 2025-12-25 08:34:27.155695 CRANWIN3 60212 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 2.77 s.} ... 2025-12-25 08:34:27.158647 CRANWIN3 60212 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=55060 on localhost:11114 at 08:34:27.424 2025-12-25 08:34:30.117091 CRANWIN3 60212 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.97 s. 2025-12-25 08:34:30.11991 CRANWIN3 60212 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ... starting worker pid=59088 on localhost:11114 at 08:34:30.369 2025-12-25 08:34:33.554232 CRANWIN3 60212 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.43000000000001 s. 2025-12-25 08:34:33.556535 CRANWIN3 60212 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 9.17 s. 2025-12-25 08:34:33.560453 CRANWIN3 60212 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96 2025-12-25 08:34:33.562647 CRANWIN3 60212 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-25 08:34:33.573921 CRANWIN3 60212 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96 2025-12-25 08:34:33.576141 CRANWIN3 60212 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-25 08:34:33.605175 CRANWIN3 60212 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96 2025-12-25 08:34:33.607311 CRANWIN3 60212 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-25 08:34:33.617287 CRANWIN3 60212 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-25 08:34:38.044012 CRANWIN3 60212 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96 2025-12-25 08:34:38.047219 CRANWIN3 60212 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-25 08:34:38.061077 CRANWIN3 60212 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96 2025-12-25 08:34:38.064136 CRANWIN3 60212 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-25 08:34:38.099569 CRANWIN3 60212 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-estimate_gps-15.R 2025-12-25 08:34:43.338492 CRANWIN3 60212 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-25 08:34:48.860389 CRANWIN3 60212 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=50872 on localhost:11114 at 08:34:49.116 2025-12-25 08:34:51.657825 CRANWIN3 60212 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.8 s. 2025-12-25 08:34:51.660725 CRANWIN3 60212 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ... starting worker pid=94728 on localhost:11114 at 08:34:51.933 2025-12-25 08:34:54.640841 CRANWIN3 60212 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 2.98 s. Saving _problems/test-estimate_mean_sd_nn-37.R 2025-12-25 08:34:54.70722 CRANWIN3 60212 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-25 08:34:58.978188 CRANWIN3 60212 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-25 08:35:04.271481 CRANWIN3 60212 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=36152 on localhost:11114 at 08:35:04.499 2025-12-25 08:35:06.926677 CRANWIN3 60212 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.64999999999999 s. 2025-12-25 08:35:06.960321 CRANWIN3 60212 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-25 08:35:12.28961 CRANWIN3 60212 GPCERF find_optimal_nn INFO: Started finding optimal values ... starting worker pid=92136 on localhost:11114 at 08:35:12.558 2025-12-25 08:35:15.800009 CRANWIN3 60212 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 3.5 s.} ... [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ── Expected `deriv_val[1, 1]` to equal 1.558466. Differences: `actual`: -1.0 `expected`: 1.6 ── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ── Expected `weights[37]` to equal 3.307249e-05. Differences: `actual`: -0.00011 `expected`: 0.00003 ── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ── Expected `gp_cerf[10]` to equal 2.105425. Differences: `actual`: -6.1 `expected`: 2.1 ── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ───────────── Expected `weight$weight[28]` to equal 0.0002182767. Differences: `actual`: 0.00000 `expected`: 0.00022 ── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ─────── Expected `gps_m$gps[4, 1]` to equal 8.74310154. Differences: `actual`: 7.3 `expected`: 8.7 ── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ── Expected `val[10]` to equal 5.031225. Differences: `actual`: 5.067 `expected`: 5.031 [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ] Error: ! Test failures. Execution halted Flavor: r-release-windows-x86_64

Version: 0.2.4
Check: tests
Result: ERROR Running 'testthat.R' [209s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(GPCERF) > > test_check("GPCERF") 2025-12-24 12:06:17.070682 CRANWIN2 18568 GPCERF estimate_gps INFO: Started estimating GPS values ... Loading required package: nnls Saving _problems/test-compute_deriv_nn-21.R 2025-12-24 12:06:25.362538 CRANWIN2 18568 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_deriv_weights_gp-17.R 2025-12-24 12:06:34.214186 CRANWIN2 18568 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_m_sigma-32.R 2025-12-24 12:06:46.55157 CRANWIN2 18568 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-24 12:06:54.717796 CRANWIN2 18568 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-24 12:07:03.106524 CRANWIN2 18568 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=77584 on localhost:11821 at 12:07:03.429 2025-12-24 12:07:06.868679 CRANWIN2 18568 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.76 s. 2025-12-24 12:07:06.923477 CRANWIN2 18568 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-24 12:07:14.941586 CRANWIN2 18568 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-24 12:07:23.619206 CRANWIN2 18568 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_weight_gp-49.R 2025-12-24 12:07:31.908482 CRANWIN2 18568 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-24 12:07:39.457051 CRANWIN2 18568 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56 2025-12-24 12:07:44.745028 CRANWIN2 18568 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-24 12:07:51.583295 CRANWIN2 18568 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56 2025-12-24 12:07:51.607923 CRANWIN2 18568 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-24 12:07:59.630206 CRANWIN2 18568 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56 2025-12-24 12:07:59.647258 CRANWIN2 18568 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56 2025-12-24 12:07:59.665016 CRANWIN2 18568 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56 2025-12-24 12:07:59.682822 CRANWIN2 18568 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56 2025-12-24 12:07:59.700961 CRANWIN2 18568 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56 2025-12-24 12:07:59.719322 CRANWIN2 18568 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56 2025-12-24 12:07:59.737843 CRANWIN2 18568 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56 2025-12-24 12:07:59.759488 CRANWIN2 18568 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-24 12:08:07.845885 CRANWIN2 18568 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56 starting worker pid=74904 on localhost:11821 at 12:08:08.184 starting worker pid=37976 on localhost:11821 at 12:08:08.205 2025-12-24 12:08:17.116369 CRANWIN2 18568 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-24 12:08:25.390601 CRANWIN2 18568 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56 2025-12-24 12:08:25.39417 CRANWIN2 18568 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-24 12:08:25.471506 CRANWIN2 18568 GPCERF find_optimal_nn INFO: Started finding optimal values ... starting worker pid=94484 on localhost:11821 at 12:08:25.852 2025-12-24 12:08:29.743076 CRANWIN2 18568 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 4.27000000000001 s.} ... 2025-12-24 12:08:29.746608 CRANWIN2 18568 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=46964 on localhost:11821 at 12:08:30.019 2025-12-24 12:08:33.247613 CRANWIN2 18568 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.5 s. 2025-12-24 12:08:33.251011 CRANWIN2 18568 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ... starting worker pid=29156 on localhost:11821 at 12:08:33.609 2025-12-24 12:08:38.290541 CRANWIN2 18568 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 5.05000000000001 s. 2025-12-24 12:08:38.292491 CRANWIN2 18568 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 12.91 s. 2025-12-24 12:08:38.295923 CRANWIN2 18568 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56 2025-12-24 12:08:38.298036 CRANWIN2 18568 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-24 12:08:38.308549 CRANWIN2 18568 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56 2025-12-24 12:08:38.310745 CRANWIN2 18568 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-24 12:08:38.352045 CRANWIN2 18568 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56 2025-12-24 12:08:38.355327 CRANWIN2 18568 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-24 12:08:38.372038 CRANWIN2 18568 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-24 12:08:45.158441 CRANWIN2 18568 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56 2025-12-24 12:08:45.16208 CRANWIN2 18568 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-24 12:08:45.180947 CRANWIN2 18568 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56 2025-12-24 12:08:45.184941 CRANWIN2 18568 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-24 12:08:45.226221 CRANWIN2 18568 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-estimate_gps-15.R 2025-12-24 12:08:53.359796 CRANWIN2 18568 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-24 12:09:01.497112 CRANWIN2 18568 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=41520 on localhost:11821 at 12:09:01.784 2025-12-24 12:09:05.249726 CRANWIN2 18568 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.75 s. 2025-12-24 12:09:05.253028 CRANWIN2 18568 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ... starting worker pid=96540 on localhost:11821 at 12:09:05.529 2025-12-24 12:09:09.192135 CRANWIN2 18568 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.94999999999999 s. Saving _problems/test-estimate_mean_sd_nn-37.R 2025-12-24 12:09:09.260614 CRANWIN2 18568 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-24 12:09:16.007441 CRANWIN2 18568 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-24 12:09:24.201847 CRANWIN2 18568 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=95384 on localhost:11821 at 12:09:24.524 2025-12-24 12:09:28.180538 CRANWIN2 18568 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.99000000000001 s. 2025-12-24 12:09:28.211805 CRANWIN2 18568 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-24 12:09:36.632002 CRANWIN2 18568 GPCERF find_optimal_nn INFO: Started finding optimal values ... starting worker pid=60404 on localhost:11821 at 12:09:36.915 2025-12-24 12:09:41.357486 CRANWIN2 18568 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 4.72 s.} ... [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ── Expected `deriv_val[1, 1]` to equal 1.558466. Differences: `actual`: -1.0 `expected`: 1.6 ── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ── Expected `weights[37]` to equal 3.307249e-05. Differences: `actual`: -0.00011 `expected`: 0.00003 ── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ── Expected `gp_cerf[10]` to equal 2.105425. Differences: `actual`: -6.1 `expected`: 2.1 ── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ───────────── Expected `weight$weight[28]` to equal 0.0002182767. Differences: `actual`: 0.00000 `expected`: 0.00022 ── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ─────── Expected `gps_m$gps[4, 1]` to equal 8.74310154. Differences: `actual`: 7.3 `expected`: 8.7 ── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ── Expected `val[10]` to equal 5.031225. Differences: `actual`: 5.067 `expected`: 5.031 [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ] Error: ! Test failures. Execution halted Flavor: r-oldrel-windows-x86_64