Last updated on 2026-08-01 07:51:30 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.0 | 9.48 | 77.98 | 87.46 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.0.0 | 5.82 | 55.38 | 61.20 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.0 | 14.00 | 121.21 | 135.21 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.0 | 61.37 | ERROR | |||
| r-devel-windows-x86_64 | 1.0.0 | 11.00 | 83.00 | 94.00 | ERROR | |
| r-patched-linux-x86_64 | 1.0.0 | 8.61 | 73.59 | 82.20 | ERROR | |
| r-release-linux-x86_64 | 1.0.0 | 8.88 | 74.37 | 83.25 | ERROR | |
| r-release-macos-arm64 | 1.0.0 | 2.00 | 24.00 | 26.00 | OK | |
| r-release-macos-x86_64 | 1.0.0 | 6.00 | 179.00 | 185.00 | OK | |
| r-release-windows-x86_64 | 1.0.0 | 13.00 | 83.00 | 96.00 | ERROR | |
| r-oldrel-macos-arm64 | 1.0.0 | OK | ||||
| r-oldrel-macos-x86_64 | 1.0.0 | 5.00 | 79.00 | 84.00 | OK | |
| r-oldrel-windows-x86_64 | 1.0.0 | 15.00 | 108.00 | 123.00 | ERROR |
Version: 1.0.0
Check: DESCRIPTION meta-information
Result: NOTE
Author field differs from that derived from Authors@R
Author: ‘Marwan El Homsi [aut, cre, cph] (<https://orcid.org/0000-0002-5782-6757>, Desbrest Institute of Epidemiology and Public Health, Univ Montpellier, INSERM, Montpellier, France.), Isabella Annesi-Maesano [ctb, ths, fnd] (<https://orcid.org/0000-0002-6340-9300>, Desbrest Institute of Epidemiology and Public Health, Univ Montpellier, INSERM, Montpellier, France., Department of Allergic and Respiratory Diseases, Montpellier University Hospital, Montpellier.)’
Authors@R: ‘Marwan El Homsi [aut, cre, cph] (ORCID: <https://orcid.org/0000-0002-5782-6757>, affiliation: Desbrest Institute of Epidemiology and Public Health, Univ Montpellier, INSERM, Montpellier, France.), Isabella Annesi-Maesano [ctb, ths, fnd] (ORCID: <https://orcid.org/0000-0002-6340-9300>, affiliation1: Desbrest Institute of Epidemiology and Public Health, Univ Montpellier, INSERM, Montpellier, France., affiliation2: Department of Allergic and Respiratory Diseases, Montpellier University Hospital, Montpellier.)’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.0.0
Check: examples
Result: ERROR
Running examples in ‘Elja-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ELJAglm
> ### Title: Generalized Linear Models regression for EnvWAS/EWAS analysis
> ### Aliases: ELJAglm
>
> ### ** Examples
>
> ### Loading the PIMA dataset contained in the mlbench package
>
> library(mlbench)
> data(PimaIndiansDiabetes)
Warning in data(PimaIndiansDiabetes) :
data set ‘PimaIndiansDiabetes’ not found
>
> ### Using ELJAlinear to perform EWAS analysis
>
> ELJAglm(var = 'diabetes',data = PimaIndiansDiabetes,
+ family = binomial(link = "logit"), manplot = TRUE, Bonferroni = TRUE,
+ FDR = TRUE, nbvalmanplot = 30, manplotsign = FALSE)
Error: object 'PimaIndiansDiabetes' not found
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.0.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘Elja.Rmd’ using rmarkdown
Quitting from Elja.Rmd:63-67 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! object 'PimaIndiansDiabetes' not found
---
Backtrace:
▆
1. └─utils::head(PimaIndiansDiabetes)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Elja.Rmd' failed with diagnostics:
object 'PimaIndiansDiabetes' not found
--- failed re-building ‘Elja.Rmd’
SUMMARY: processing the following file failed:
‘Elja.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.0.0
Check: for new files in some other directories
Result: NOTE
Found the following files/directories:
‘~/tmp/scratch/Rtmp0PcCit’ ‘~/tmp/scratch/Rtmp1nuk3Z’
‘~/tmp/scratch/Rtmp2OrRgM’ ‘~/tmp/scratch/Rtmp4BQmRN’
‘~/tmp/scratch/Rtmp5Hs56f’ ‘~/tmp/scratch/Rtmp5SyfHV’
‘~/tmp/scratch/Rtmp5TFYaG’ ‘~/tmp/scratch/Rtmp5Uk3oZ’
‘~/tmp/scratch/Rtmp64nl77’ ‘~/tmp/scratch/Rtmp6NiL6m’
‘~/tmp/scratch/Rtmp6aalCx’ ‘~/tmp/scratch/Rtmp6mO092’
‘~/tmp/scratch/Rtmp7dRdl1’ ‘~/tmp/scratch/Rtmp98ooEq’
‘~/tmp/scratch/Rtmp9Fisy8’ ‘~/tmp/scratch/Rtmp9Sfl1d’
‘~/tmp/scratch/Rtmp9rZC46’ ‘~/tmp/scratch/RtmpA8xPNJ’
‘~/tmp/scratch/RtmpAG3wpR’ ‘~/tmp/scratch/RtmpAJWlGB’
‘~/tmp/scratch/RtmpAZ4Dws’ ‘~/tmp/scratch/RtmpB7j7sl’
‘~/tmp/scratch/RtmpB95SsC’ ‘~/tmp/scratch/RtmpBaVmjN’
‘~/tmp/scratch/RtmpBhoJSe’ ‘~/tmp/scratch/RtmpBsS82v’
‘~/tmp/scratch/RtmpCgl1LB’ ‘~/tmp/scratch/RtmpCp4l23’
‘~/tmp/scratch/RtmpDMnfqE’ ‘~/tmp/scratch/RtmpDVjnEF’
‘~/tmp/scratch/RtmpDbXUTZ’ ‘~/tmp/scratch/RtmpDo0qTq’
‘~/tmp/scratch/RtmpEWshWn’ ‘~/tmp/scratch/RtmpEasCQR’
‘~/tmp/scratch/RtmpEvccmd’ ‘~/tmp/scratch/RtmpG6OgFJ’
‘~/tmp/scratch/RtmpGIbJ8X’ ‘~/tmp/scratch/RtmpGm0HYA’
‘~/tmp/scratch/RtmpHcM9OW’ ‘~/tmp/scratch/RtmpHfgD4i’
‘~/tmp/scratch/RtmpI8wSIq’ ‘~/tmp/scratch/RtmpIdkOmQ’
‘~/tmp/scratch/RtmpIoccFo’ ‘~/tmp/scratch/RtmpJ0sVAq’
‘~/tmp/scratch/RtmpJ2tX1u’ ‘~/tmp/scratch/RtmpJrsSkm’
‘~/tmp/scratch/RtmpJucdES’ ‘~/tmp/scratch/RtmpKEPsws’
‘~/tmp/scratch/RtmpKJIMH6’ ‘~/tmp/scratch/RtmpKRvhs5’
‘~/tmp/scratch/RtmpKjUXeU’ ‘~/tmp/scratch/RtmpL1KcuD’
‘~/tmp/scratch/RtmpLXDWpI’ ‘~/tmp/scratch/RtmpLYzg3P’
‘~/tmp/scratch/RtmpM2cK8l’ ‘~/tmp/scratch/RtmpMS9Jjw’
‘~/tmp/scratch/RtmpOkTYfB’ ‘~/tmp/scratch/RtmpOzqDuG’
‘~/tmp/scratch/RtmpP1mE1g’ ‘~/tmp/scratch/RtmpPbbnqV’
‘~/tmp/scratch/RtmpQ4TjbF’ ‘~/tmp/scratch/RtmpQFYtB6’
‘~/tmp/scratch/RtmpQcNxB9’ ‘~/tmp/scratch/RtmpQkA1JT’
‘~/tmp/scratch/RtmpRk5tC2’ ‘~/tmp/scratch/RtmpRqJN1p’
‘~/tmp/scratch/RtmpSdNX9q’ ‘~/tmp/scratch/RtmpSvKNeI’
‘~/tmp/scratch/RtmpTLjPoU’ ‘~/tmp/scratch/RtmpTaxpf5’
‘~/tmp/scratch/RtmpUHFXYk’ ‘~/tmp/scratch/RtmpUklhXI’
‘~/tmp/scratch/RtmpUmibwj’ ‘~/tmp/scratch/RtmpUrW3Z7’
‘~/tmp/scratch/RtmpV1HOhI’ ‘~/tmp/scratch/RtmpVfNh62’
‘~/tmp/scratch/RtmpYfdc4B’ ‘~/tmp/scratch/RtmpZLSOrl’
‘~/tmp/scratch/Rtmpa0boXN’ ‘~/tmp/scratch/RtmpaZqUM7’
‘~/tmp/scratch/Rtmpak0ABv’ ‘~/tmp/scratch/RtmpbPbiNu’
‘~/tmp/scratch/RtmpbdceYL’ ‘~/tmp/scratch/Rtmpcp8HnX’
‘~/tmp/scratch/Rtmpd1RAVs’ ‘~/tmp/scratch/Rtmpdjpc8E’
‘~/tmp/scratch/RtmpdsEMtR’ ‘~/tmp/scratch/RtmpduHsaZ’
‘~/tmp/scratch/Rtmpfd71hR’ ‘~/tmp/scratch/RtmpfdSIZ8’
‘~/tmp/scratch/RtmpgZTZGl’ ‘~/tmp/scratch/RtmpgqboL9’
‘~/tmp/scratch/RtmphFERfb’ ‘~/tmp/scratch/RtmphLb0eo’
‘~/tmp/scratch/RtmphV8MZ8’ ‘~/tmp/scratch/RtmpiOjl6U’
‘~/tmp/scratch/Rtmpjcqwhm’ ‘~/tmp/scratch/Rtmpjjuomg’
‘~/tmp/scratch/RtmpkMxfrc’ ‘~/tmp/scratch/RtmpkOxVok’
‘~/tmp/scratch/RtmpkV5Puw’ ‘~/tmp/scratch/RtmplVbWTR’
‘~/tmp/scratch/Rtmpla73k0’ ‘~/tmp/scratch/RtmplvJb0k’
‘~/tmp/scratch/RtmpmwuGfu’ ‘~/tmp/scratch/Rtmpn7xcaW’
‘~/tmp/scratch/RtmpnWvYqh’ ‘~/tmp/scratch/RtmpnpZJ4u’
‘~/tmp/scratch/Rtmpnu2qK1’ ‘~/tmp/scratch/RtmpoPpzoK’
‘~/tmp/scratch/RtmpofRK2D’ ‘~/tmp/scratch/RtmppPpVeO’
‘~/tmp/scratch/RtmpqBZncs’ ‘~/tmp/scratch/RtmpqLYoOk’
‘~/tmp/scratch/RtmprXIJAs’ ‘~/tmp/scratch/RtmpsJNSwK’
‘~/tmp/scratch/RtmptYmjyq’ ‘~/tmp/scratch/Rtmptif3Fj’
‘~/tmp/scratch/Rtmpux78xw’ ‘~/tmp/scratch/RtmpvXMrUG’
‘~/tmp/scratch/Rtmpw0kH8R’ ‘~/tmp/scratch/Rtmpwlxsud’
‘~/tmp/scratch/RtmpyNeZkT’ ‘~/tmp/scratch/RtmpzFmKDn’
‘~/tmp/scratch/RtmpznRaVk’ ‘~/tmp/scratch/Rtmpzvnnec’
‘~/tmp/scratch/xvfb-run.0W2oUG’ ‘~/tmp/scratch/xvfb-run.2IQUIe’
‘~/tmp/scratch/xvfb-run.5jkzkd’ ‘~/tmp/scratch/xvfb-run.62duFs’
‘~/tmp/scratch/xvfb-run.7UMaoq’ ‘~/tmp/scratch/xvfb-run.7ihiSx’
‘~/tmp/scratch/xvfb-run.AG1S0I’ ‘~/tmp/scratch/xvfb-run.CAdqRN’
‘~/tmp/scratch/xvfb-run.D6qUcg’ ‘~/tmp/scratch/xvfb-run.EJzCiH’
‘~/tmp/scratch/xvfb-run.EUCxzW’ ‘~/tmp/scratch/xvfb-run.GQ1QBW’
‘~/tmp/scratch/xvfb-run.GVoaRM’ ‘~/tmp/scratch/xvfb-run.HqOgLK’
‘~/tmp/scratch/xvfb-run.IY2EBl’ ‘~/tmp/scratch/xvfb-run.JOdi08’
‘~/tmp/scratch/xvfb-run.Je6Wvp’ ‘~/tmp/scratch/xvfb-run.JtBE7g’
‘~/tmp/scratch/xvfb-run.Jua8e9’ ‘~/tmp/scratch/xvfb-run.L5ULpz’
‘~/tmp/scratch/xvfb-run.M4dp22’ ‘~/tmp/scratch/xvfb-run.MwglXJ’
‘~/tmp/scratch/xvfb-run.NKu2TR’ ‘~/tmp/scratch/xvfb-run.UxNCm7’
‘~/tmp/scratch/xvfb-run.VXx6Pf’ ‘~/tmp/scratch/xvfb-run.WpIPCG’
‘~/tmp/scratch/xvfb-run.XDcmKs’ ‘~/tmp/scratch/xvfb-run.YC8Ypj’
‘~/tmp/scratch/xvfb-run.YD2i6o’ ‘~/tmp/scratch/xvfb-run.YDJzGl’
‘~/tmp/scratch/xvfb-run.YJov4Z’ ‘~/tmp/scratch/xvfb-run.dmM75D’
‘~/tmp/scratch/xvfb-run.eGutCM’ ‘~/tmp/scratch/xvfb-run.mhMel0’
‘~/tmp/scratch/xvfb-run.px1HXL’ ‘~/tmp/scratch/xvfb-run.qtzNur’
‘~/tmp/scratch/xvfb-run.rw4YVI’ ‘~/tmp/scratch/xvfb-run.s1VnLf’
‘~/tmp/scratch/xvfb-run.szOZaO’ ‘~/tmp/scratch/xvfb-run.t2p4pA’
‘~/tmp/scratch/xvfb-run.trWTgj’ ‘~/tmp/scratch/xvfb-run.wOcOP1’
‘~/tmp/scratch/xvfb-run.wPqKWk’ ‘~/tmp/scratch/xvfb-run.wUgteb’
‘~/tmp/scratch/xvfb-run.yyeuQb’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.0
Check: examples
Result: ERROR
Running examples in ‘Elja-Ex.R’ failed
The error most likely occurred in:
> ### Name: ELJAglm
> ### Title: Generalized Linear Models regression for EnvWAS/EWAS analysis
> ### Aliases: ELJAglm
>
> ### ** Examples
>
> ### Loading the PIMA dataset contained in the mlbench package
>
> library(mlbench)
> data(PimaIndiansDiabetes)
Warning in data(PimaIndiansDiabetes) :
data set ‘PimaIndiansDiabetes’ not found
>
> ### Using ELJAlinear to perform EWAS analysis
>
> ELJAglm(var = 'diabetes',data = PimaIndiansDiabetes,
+ family = binomial(link = "logit"), manplot = TRUE, Bonferroni = TRUE,
+ FDR = TRUE, nbvalmanplot = 30, manplotsign = FALSE)
Error: object 'PimaIndiansDiabetes' not found
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 1.0.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘Elja.Rmd’ using rmarkdown
Quitting from Elja.Rmd:63-67 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! object 'PimaIndiansDiabetes' not found
---
Backtrace:
▆
1. └─utils::head(PimaIndiansDiabetes)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Elja.Rmd' failed with diagnostics:
object 'PimaIndiansDiabetes' not found
--- failed re-building ‘Elja.Rmd’
SUMMARY: processing the following file failed:
‘Elja.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64