CRAN Package Check Results for Package CohortConstructor

Last updated on 2024-11-23 07:50:14 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.3.2 9.24 1162.76 1172.00 OK
r-devel-linux-x86_64-debian-gcc 0.3.2 5.78 843.82 849.60 OK
r-devel-linux-x86_64-fedora-clang 0.3.2 1877.72 ERROR
r-devel-linux-x86_64-fedora-gcc 0.3.2 1779.92 ERROR
r-devel-windows-x86_64 0.3.2 11.00 699.00 710.00 OK
r-patched-linux-x86_64 0.3.2 9.38 1107.45 1116.83 OK
r-release-linux-x86_64 0.3.1 5.52 1291.22 1296.74 OK
r-release-macos-arm64 0.3.2 307.00 NOTE
r-release-macos-x86_64 0.3.2 434.00 NOTE
r-release-windows-x86_64 0.3.2 11.00 750.00 761.00 NOTE
r-oldrel-macos-arm64 0.3.2 410.00 NOTE
r-oldrel-macos-x86_64 0.3.2 513.00 NOTE
r-oldrel-windows-x86_64 0.3.2 15.00 984.00 999.00 NOTE

Check Details

Version: 0.3.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘a00_introduction.Rmd’ using rmarkdown --- finished re-building ‘a00_introduction.Rmd’ --- re-building ‘a01_building_base_cohorts.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/GiBleed.zip' Content type 'application/zip' length 6754786 bytes (6.4 MB) ================================================== downloaded 6.4 MB --- finished re-building ‘a01_building_base_cohorts.Rmd’ --- re-building ‘a02_cohort_table_requirements.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/GiBleed.zip' Content type 'application/zip' length 6754786 bytes (6.4 MB) ================================================== downloaded 6.4 MB ** Processing: /data/gannet/ripley/R/packages/tests-clang/CohortConstructor.Rcheck/vign_test/CohortConstructor/vignettes/a02_cohort_table_requirements_files/figure-html/unnamed-chunk-15-1.png 288x288 pixels, 8 bits/pixel, 255 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 3779 bytes Input file size = 4634 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3377 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3377 Output IDAT size = 3377 bytes (402 bytes decrease) Output file size = 3455 bytes (1179 bytes = 25.44% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CohortConstructor.Rcheck/vign_test/CohortConstructor/vignettes/a02_cohort_table_requirements_files/figure-html/unnamed-chunk-16-1.png 288x288 pixels, 8 bits/pixel, 252 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 3614 bytes Input file size = 4460 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3284 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3284 Output IDAT size = 3284 bytes (330 bytes decrease) Output file size = 3362 bytes (1098 bytes = 24.62% decrease) --- finished re-building ‘a02_cohort_table_requirements.Rmd’ --- re-building ‘a03_require_demographics.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/GiBleed.zip' Content type 'application/zip' length 6754786 bytes (6.4 MB) ================================================== downloaded 6.4 MB --- finished re-building ‘a03_require_demographics.Rmd’ --- re-building ‘a04_require_intersections.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/GiBleed.zip' Content type 'application/zip' length 6754786 bytes (6.4 MB) ================================================== downloaded 6.4 MB --- finished re-building ‘a04_require_intersections.Rmd’ --- re-building ‘a05_update_cohort_start_end.Rmd’ using rmarkdown --- finished re-building ‘a05_update_cohort_start_end.Rmd’ --- re-building ‘a06_concatanate_cohorts.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/GiBleed.zip' Content type 'application/zip' length 6754786 bytes (6.4 MB) ================================================== downloaded 6.4 MB --- finished re-building ‘a06_concatanate_cohorts.Rmd’ --- re-building ‘a07_filter_cohorts.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/GiBleed.zip' Content type 'application/zip' length 6754786 bytes (6.4 MB) ================================================== downloaded 6.4 MB --- finished re-building ‘a07_filter_cohorts.Rmd’ --- re-building ‘a08_split_cohorts.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/GiBleed.zip' Content type 'application/zip' length 6754786 bytes (6.4 MB) ================================================== downloaded 6.4 MB --- finished re-building ‘a08_split_cohorts.Rmd’ --- re-building ‘a09_combine_cohorts.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/GiBleed.zip' Content type 'application/zip' length 6754786 bytes (6.4 MB) ================================================== downloaded 6.4 MB --- finished re-building ‘a09_combine_cohorts.Rmd’ --- re-building ‘a10_match_cohorts.Rmd’ using rmarkdown --- finished re-building ‘a10_match_cohorts.Rmd’ --- re-building ‘a11_benchmark.Rmd’ using rmarkdown Quitting from lines 124-137 [unnamed-chunk-5] (a11_benchmark.Rmd) Error: processing vignette 'a11_benchmark.Rmd' failed with diagnostics: The size of `nm` (2) must be compatible with the size of `x` (0). --- failed re-building ‘a11_benchmark.Rmd’ SUMMARY: processing the following file failed: ‘a11_benchmark.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.3.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘a00_introduction.Rmd’ using rmarkdown --- finished re-building ‘a00_introduction.Rmd’ --- re-building ‘a01_building_base_cohorts.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/GiBleed.zip' Content type 'application/zip' length 6754786 bytes (6.4 MB) ================================================== downloaded 6.4 MB --- finished re-building ‘a01_building_base_cohorts.Rmd’ --- re-building ‘a02_cohort_table_requirements.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/GiBleed.zip' Content type 'application/zip' length 6754786 bytes (6.4 MB) ================================================== downloaded 6.4 MB ** Processing: /data/gannet/ripley/R/packages/tests-devel/CohortConstructor.Rcheck/vign_test/CohortConstructor/vignettes/a02_cohort_table_requirements_files/figure-html/unnamed-chunk-15-1.png 288x288 pixels, 8 bits/pixel, 255 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 3779 bytes Input file size = 4634 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3377 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3377 Output IDAT size = 3377 bytes (402 bytes decrease) Output file size = 3455 bytes (1179 bytes = 25.44% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CohortConstructor.Rcheck/vign_test/CohortConstructor/vignettes/a02_cohort_table_requirements_files/figure-html/unnamed-chunk-16-1.png 288x288 pixels, 8 bits/pixel, 252 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 3614 bytes Input file size = 4460 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3284 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3284 Output IDAT size = 3284 bytes (330 bytes decrease) Output file size = 3362 bytes (1098 bytes = 24.62% decrease) --- finished re-building ‘a02_cohort_table_requirements.Rmd’ --- re-building ‘a03_require_demographics.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/GiBleed.zip' Content type 'application/zip' length 6754786 bytes (6.4 MB) ================================================== downloaded 6.4 MB --- finished re-building ‘a03_require_demographics.Rmd’ --- re-building ‘a04_require_intersections.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/GiBleed.zip' Content type 'application/zip' length 6754786 bytes (6.4 MB) ================================================== downloaded 6.4 MB --- finished re-building ‘a04_require_intersections.Rmd’ --- re-building ‘a05_update_cohort_start_end.Rmd’ using rmarkdown --- finished re-building ‘a05_update_cohort_start_end.Rmd’ --- re-building ‘a06_concatanate_cohorts.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/GiBleed.zip' Content type 'application/zip' length 6754786 bytes (6.4 MB) ================================================== downloaded 6.4 MB --- finished re-building ‘a06_concatanate_cohorts.Rmd’ --- re-building ‘a07_filter_cohorts.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/GiBleed.zip' Content type 'application/zip' length 6754786 bytes (6.4 MB) ================================================== downloaded 6.4 MB --- finished re-building ‘a07_filter_cohorts.Rmd’ --- re-building ‘a08_split_cohorts.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/GiBleed.zip' Content type 'application/zip' length 6754786 bytes (6.4 MB) ================================================== downloaded 6.4 MB --- finished re-building ‘a08_split_cohorts.Rmd’ --- re-building ‘a09_combine_cohorts.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/GiBleed.zip' Content type 'application/zip' length 6754786 bytes (6.4 MB) ================================================== downloaded 6.4 MB --- finished re-building ‘a09_combine_cohorts.Rmd’ --- re-building ‘a10_match_cohorts.Rmd’ using rmarkdown --- finished re-building ‘a10_match_cohorts.Rmd’ --- re-building ‘a11_benchmark.Rmd’ using rmarkdown Quitting from lines 124-137 [unnamed-chunk-5] (a11_benchmark.Rmd) Error: processing vignette 'a11_benchmark.Rmd' failed with diagnostics: The size of `nm` (2) must be compatible with the size of `x` (0). --- failed re-building ‘a11_benchmark.Rmd’ SUMMARY: processing the following file failed: ‘a11_benchmark.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.3.2
Check: installed package size
Result: NOTE installed size is 10.1Mb sub-directories of 1Mb or more: doc 9.4Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64