Last updated on 2024-05-11 07:51:24 CEST.
Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
---|---|---|---|---|---|---|
r-devel-linux-x86_64-debian-clang | 2.3.0 | 13.50 | 138.76 | 152.26 | OK | |
r-devel-linux-x86_64-debian-gcc | 2.3.0 | 12.01 | 103.19 | 115.20 | OK | |
r-devel-linux-x86_64-fedora-clang | 2.3.0 | 200.06 | OK | |||
r-devel-linux-x86_64-fedora-gcc | 2.3.0 | 186.29 | OK | |||
r-devel-windows-x86_64 | 2.3.0 | 13.00 | 124.00 | 137.00 | OK | |
r-patched-linux-x86_64 | 1.4.0 | 14.67 | 122.61 | 137.28 | ERROR | |
r-release-linux-x86_64 | 1.4.0 | 12.27 | 121.71 | 133.98 | ERROR | |
r-release-macos-arm64 | 2.3.0 | 55.00 | OK | |||
r-release-macos-x86_64 | 2.3.0 | 7.00 | ERROR | |||
r-release-windows-x86_64 | 2.3.0 | 15.00 | 126.00 | 141.00 | OK | |
r-oldrel-macos-arm64 | 2.3.0 | 15.00 | ERROR | |||
r-oldrel-macos-x86_64 | 2.3.0 | 8.00 | ERROR | |||
r-oldrel-windows-x86_64 | 2.3.0 | 1.00 | 9.00 | 10.00 | ERROR |
Version: 1.4.0
Check: examples
Result: ERROR
Running examples in ‘CleanBSequences-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: DNAStringSetOPR
> ### Title: Curing of biological sequences
> ### Aliases: DNAStringSetOPR
>
> ### ** Examples
>
> SEQs = readDNAStringSet(system.file("sequences","SeqInputOPR.fasta", package = "CleanBSequences"))
> PrimerR= DNAString ("GACTGCGTACCATGC")
> DNAStringSetOPR (SEQs,PrimerR)
DNAStringSet object of length 2:
width seq names
[1] 116 GCCTCGCCTCCCTCTTTGATCAG...CCTTTGCAATCTTCACAAGGTGG 170522-033_K03_11...
[2] 113 GTCTACTCGATCGTGATCCGGTA...CCTTTGCAATCTTCACAAGGTGG 170522-033_C05_15...
Error in .load_package_gracefully("pwalign", "starting with BioC 3.19, ", :
Could not load package pwalign. Is it installed?
Note that starting with BioC 3.19, calling pairwiseAlignment() requires
the pwalign package. Please install it with:
BiocManager::install("pwalign")
Calls: DNAStringSetOPR ... pairwiseAlignment -> .call_fun_in_pwalign -> .load_package_gracefully
Execution halted
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64
Version: 2.3.0
Check: package dependencies
Result: ERROR
Package required but not available: ‘pwalign’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavors: r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64