ab35db38ce54de0be03bfaadc972b7b0 *DESCRIPTION
b168f05dc744e218ed770c0f535ef7a5 *NAMESPACE
1d99715f21d97396c431d90c3c32a37f *NEWS.md
2b76ca7c55032e39391df14fb1da5d60 *R/RcppExports.R
b67f660009fb2fd57fb13fcc85b018c6 *R/cor_phylo.R
21a3e6bbda83b72b88addc458ce3801a *R/data.R
81910bccdc7e42c5d237c58a793ec00b *R/pcd.R
9f79816e6a783931352ebf45b0820d2f *R/pglmm-plot.R
8f12c20ac8aaba2fe600be08a928bafe *R/pglmm-utils.R
6f27f675eabd53de6cc73744f95ff052 *R/pglmm.R
155d745db74bb82f5d9fa927a181e12d *R/pglmm_compare.R
1805c3f7952379e37e63e18cdcfe3b5e *R/psv.R
eac4d56e33527d3950641b860cae8123 *R/utils.R
0e5915af1d998b5400f1ddd40779d52c *README.md
5a0bfeefcd3dd1d100dac98544af9c4d *build/vignette.rds
8cbc3b84764ad5105fc337bf285c6142 *data/comm_a.rda
cce1ec27d3f2bd9f240a53b608538f88 *data/comm_b.rda
908f84c1572ac5bd56af139b1a373c35 *data/envi.rda
8cc99dad492fc0788d2756c12c0d0cfc *data/oldfield.rda
c1bdb3e75ef65ec1ef9a335f15c442d3 *data/phylotree.rda
45d35b84402439bfe5595f8190ec2fae *data/traits.rda
63462820df1eabcb553c29b3ca95503a *inst/doc/benchmarks.R
1d541b32a49acfde83c137c78c0dc4d4 *inst/doc/benchmarks.Rmd
70d4d5fce61bfb3f7ea619f7b1cffcc8 *inst/doc/benchmarks.html
8777c4d3c256b4bfbdb1f5b3468847b2 *inst/doc/pglmm.R
aa13e51a169ef77f574c9cd46c943a26 *inst/doc/pglmm.Rmd
d632ee6c4fb28e313c9808f023e72c21 *inst/doc/pglmm.html
e4b5498c8c6bd85a83cf4a15e09038cb *inst/doc/plot-re.R
9fd97ec90d3323203e33ef5fdef2130e *inst/doc/plot-re.Rmd
1b1b65c307611bcaa1f6845ca5664e95 *inst/doc/plot-re.html
64439e1cc8cbf205a1db3d98cb98d940 *inst/extra_data/comm_large.rds
d3d7d2586a7482dd012b150179a16309 *inst/extra_data/phylotree_large.rds
030895e69a7b6c0d93e1912563446849 *man/align_comm_V.Rd
7d32c93906092404924b7a0abedc69ac *man/boot_ci.Rd
5fa08cf738a841daaba55922d5ed8221 *man/comm_a.Rd
04cca3fac09c97603615ba8217b1d765 *man/comm_b.Rd
15d2a9b288763aa6afabf9f7e7584911 *man/cor_phylo.Rd
723403634376c21cc7c60c2bb9b0f9dd *man/envi.Rd
c01029b9bac44f5f41b16ef1dff0df69 *man/family.communityPGLMM.Rd
b0f975113e9ec9a27f43097fa625fac7 *man/figures/logo.png
7313145eccb6ec9fbf1c2a5757fb2d80 *man/fitted.communityPGLMM.Rd
ae6dd6487b74f87f251842da3d1e2ce3 *man/fixef.Rd
bb8fe32112aeb5c25b49aace94710dc6 *man/get_design_matrix_pglmm.Rd
e6dee794f33f4c9eef3fe3d3174cb8ae *man/match_comm_tree.Rd
3b15ba6980bc2f4ae77980bbfaecf218 *man/model.frame.communityPGLMM.Rd
273fa1ac15f8940c83a5113c34833afd *man/nin.Rd
c44a133b1abdf34ed237ab2f26fb6c22 *man/nobs.communityPGLMM.Rd
5e9a23ea52870613ad3c53e6a984e861 *man/oldfield.Rd
8bd69f80a576403d7eb4781a732e5ffc *man/pcd.Rd
1578e52ac5cae74c1f095227f5e57b56 *man/pcd_pred.Rd
6478101f0613fe2fd18d322f124cd7f8 *man/pglmm-matrix-structure.Rd
bfd26860336cd53844b2db40080fec51 *man/pglmm-plot-data.Rd
cf6d642fef74845ccdcb15ec0ecb9575 *man/pglmm-plot-re.Rd
1f525b22846d65dd597528198477da03 *man/pglmm-predicted-values.Rd
de1da40723ff6fed2b7f6c3415bb2471 *man/pglmm-profile-LRT.Rd
82da39fea04f9a100b07c48d3931bb09 *man/pglmm.Rd
a7b0d4b962e97aa17fbe2feaa9985d3d *man/pglmm_compare.Rd
f55daa52550870c99601be2034831f29 *man/phylotree.Rd
14c2f226a66c48ec8589a32fa0283e85 *man/plot_bayes.Rd
82868fd08747cfbf363733e96372d63c *man/predict.communityPGLMM.Rd
781e55be7a22cdffb91a8d8c1b401141 *man/prep_dat_pglmm.Rd
1aabdd0ee98dde51489a98dbd2d654de *man/print.communityPGLMM.Rd
847b3d1c486a39949382954c6e509b7e *man/print.pglmm_compare.Rd
d7dfeedb58bfa970b566d54056d294c5 *man/psd.Rd
5e1ad192f75e218768bdd3ea0ddf38f9 *man/ranef.Rd
cdbc4d9cd9eb1aacc46de5879c44a9d1 *man/refit_boots.Rd
3fdf3e886ed3a401a02715158f6bfb65 *man/residuals.communityPGLMM.Rd
80cd7b5282dd857e6b0eb7a67d5134f4 *man/rm_site_noobs.Rd
ffe12c492e98f52d64bc456eb893eb16 *man/rm_sp_noobs.Rd
bf9b57b33a0e7792ba7e3a90f25d45fe *man/simulate.communityPGLMM.Rd
76efe0c884f0b20a6f992ce88e9fc51e *man/summary.communityPGLMM.Rd
c3a47fd0ab9d50b880a3bb6b6cf0fc17 *man/summary.pglmm_compare.Rd
f2a638d2f1c6f758945c0d5ad165a304 *man/traits.Rd
3a6a9329f18f5c23b63ecec8d699f62a *man/vcv2.Rd
2a6f9e9e044a78154d3cfda5936d6f48 *src/Makevars
3b91159514caccada8d8805fe3c969ed *src/Makevars.win
1630e7352e1522571be3edbd1b2acc28 *src/RcppExports.cpp
6747d03f142661266b3a007b0fdb992d *src/binaryPGLMM.cpp
2b62eec43d215c09b54d5b7d5cecaf18 *src/cor_phylo.cpp
f7c9e8acb39cb536a476078af79a4316 *src/cor_phylo.h
cfdb906749af1ac1af38731d914ed2a9 *src/pcd.cpp
c866c6db2f4b4e22871b9f66556e709a *src/pglmm_binary.cpp
db9b869bc0012b0d9e507662cb182fcb *src/pglmm_gaussian.cpp
10229aab29bea61e2cb549d787c7cf77 *src/psv.cpp
9d6339a494d3b9cffda8ee383bf0f0ae *tests/testthat.R
7d013969467dc2cc6874bfd7c6028f82 *tests/testthat/test-cor_phylo.R
946cfc6fe780419d82b40cd5f011a015 *tests/testthat/test-pcd.R
4a6fc4278e2084324f54aecc54d0160e *tests/testthat/test-pglmm.R
8c5fad32eab16eef0e968b8cc336aa8c *tests/testthat/test-pglmm_compare.R
424e6aac6e8794f31eaa7e3f97912e33 *tests/testthat/test-psv.R
45a45dfcbb3bea4afafb232ccffeb2b9 *tests/testthat/test-utils.R
375d717db076e610f0e6e06e75c57626 *tests/testthat/test_pglmm_utils.R
1d541b32a49acfde83c137c78c0dc4d4 *vignettes/benchmarks.Rmd
aa13e51a169ef77f574c9cd46c943a26 *vignettes/pglmm.Rmd
9fd97ec90d3323203e33ef5fdef2130e *vignettes/plot-re.Rmd
