bd8dda76a83557381eb4b04fdedea60f *DESCRIPTION
bc13263f178de2543ca28f6e33f77779 *LICENSE
53a30ecccf0a8df2836d28e2c25e3097 *NAMESPACE
b4b718fc8ce82da6f6e9f3b69b81ad0b *NEWS.md
204cb329f871b769a607d5d3bf6bb7ea *R/backend_helpers.R
1fc5172248d21215ec7d91a601bff454 *R/data.R
9abb57f33c6a6ba0b4c6200d65e4aaa6 *R/dcst_landmark_pipeline.R
85757abf9c4daf153d0de78c3dd36658 *R/filter_asv.R
33cbb42e4cc8292b6e2a8eb7a1c4ccd5 *R/hypercube_embedding.R
cc9cc141f4627ba6fa21acc2526831df *R/imports.R
41e6dfcc3bb341d1f1a2c2c62b6d26b9 *R/label_format.R
df3f7aee90de310a390ec6a056e07fef *R/landmarks.R
13477efe393e4fca2d1ec5bbfe7dd71b *R/linf.R
6d6bdac2cbea0056f666be03b798f196 *R/transfer_dcsts.R
0c5182d9722c833c7e4f556c71717854 *README.md
38ab1962eec6eab5c520a4502634d7b6 *build/partial.rdb
1d310d6657208f0f34a82f6aab6cfba5 *build/vignette.rds
0381d35318e5cd2717900780d7d3fa8b *data/agp_gut.rda
1fc791ee84468682823b858c93d2d2c5 *data/valencia13k_dcst_depth2_merged.rda
6109c7078ecc46bcd5ada97122c54fed *data/valencia13k_dcst_depth3_merged.rda
36e0b98930465964342bfb62400d0b72 *data/valencia2k.rda
ac48dac215569ba9e0f6fbdd705ea7ff *data/valencia_linf_hypercube_1k.rda
218fbf4baa3571e547ab16dfe00623c8 *inst/CITATION
56dcad23d84472d572521fe2164938a6 *inst/DATA_PROVENANCE.md
3fea644ca88837f797e7aa8bf5b33bf1 *inst/WORDLIST
df4b47c39d8eaddfcc4c33a673b48e29 *inst/doc/linf-intro.R
37ad51034befdfca68412e85510546e0 *inst/doc/linf-intro.Rmd
20fd4bdeedf6b5df999e7559c2fe5b88 *inst/doc/linf-intro.html
ed0efc6320de4749461a40f1d8a241d1 *inst/doc/linf-vaginal.R
1a39e12f92e3142242b074e70ac44359 *inst/doc/linf-vaginal.Rmd
33aba9855ab1f2b8a9f95513d7cf94ba *inst/doc/linf-vaginal.html
891673b40894447bc31f3ef853d4c7a1 *inst/extdata/agp_gut_counts.csv.gz
46bf11b0b95ad39586b8d97506a1b458 *inst/extdata/agp_gut_meta.csv
456ee6a93f96893993f38776ac41f62d *inst/extdata/agp_gut_taxa.txt
2c031e80ff8d565f54d43b77e7b948a0 *man/agp_gut.Rd
a9c1564e5f2eb668cbdb4b2e2011e881 *man/asv.to.linf.csts.Rd
6a5cc9f702adaa1551316d6da278b308 *man/dcst.view.Rd
f78548175bed68ff4fb03742538b0bac *man/figures/readme-dcst-barplot.png
b2200fd5ec01fdcb1b356b227b43d226 *man/filter.asv.Rd
ee344f61e6e4d2e762ca1e87da2f17dc *man/latex.linf.csts.Rd
a84f53fa7f5e53ea4abe591c04fa75fc *man/linf.csts.Rd
b46567428227d6f17a1f5a043010e59b *man/linf.dcst.landmark.pipeline.Rd
0be4b58d5bbed4bea49c8188a06591c9 *man/linf.dominant.features.Rd
ebbdb5793689e2a61d171ef5b2343aa3 *man/linf.feature.labels.Rd
2f3e7f0e703c34cae8d2afb1c3399e8e *man/linf.hypercube.embedding.Rd
b9087b1bed8c13c982b283bec8ee96e7 *man/linf.landmarks.Rd
f2d58c00eee8f3143f9e9849d230e219 *man/normalize.linf.Rd
25d2373557704c9b8ba8648ecc221d73 *man/print.linf.csts.Rd
da9c9d11e5be352fe6aa1c4a425c463c *man/refine.linf.csts.Rd
0941d5932c0d66622413ea8431af423a *man/refine.linf.csts.iter.Rd
af8ea8ff8e15f3c2aaa14c2e50e10a66 *man/summary.linf.csts.Rd
1b68afe8f67264d05d49fc6e9125cedd *man/transfer.dcsts.Rd
cf6d4c759f2d6051ffcf80fc67265ab5 *man/valencia13k_dcst_depth2_merged.Rd
29acb64f3539963f9cdc66705cec6ef5 *man/valencia13k_dcst_depth3_merged.Rd
d0f9983528900cc41e40ff515e29815b *man/valencia2k.Rd
70cfcfb6a712a82aae4c4623722a5cc1 *man/valencia_linf_hypercube_1k.Rd
04a7502dbd35c73d550f280fc6cf4f3f *tests/testthat.R
0d18a038e65a1bf70274da647209c2d1 *tests/testthat/test-data-provenance.R
71c06de621303dea7e06049cb3eb51c0 *tests/testthat/test-dcst-landmark-pipeline.R
6be015fb51b601b405f676d1fe789ecd *tests/testthat/test-filter.asv.R
546d30ec33bd0786391a9b9bc187c684 *tests/testthat/test-hypercube-embedding.R
8c0a7a00913fe17d3e714d8fee11763e *tests/testthat/test-label-formatting.R
426066e11b56ca4d129624e817dadecc *tests/testthat/test-landmarks.R
0598de1dce26fe3d0231b97a0df51cce *tests/testthat/test-public-terminology.R
d484492403bcd1c5a598a701b71112eb *tests/testthat/test-sparse-backend.R
cf1c4ac86a386da9a0b65b9d1557f2cc *tests/testthat/test-transfer-dcsts.R
37ad51034befdfca68412e85510546e0 *vignettes/linf-intro.Rmd
1a39e12f92e3142242b074e70ac44359 *vignettes/linf-vaginal.Rmd
