c82a979ae992a28042494a1d9e8cbac7 *DESCRIPTION
fb5c1670924a9ff80d05908806b7964a *LICENSE
6bb7858dc9820d400cde1e4f1b10d2af *NAMESPACE
438d5d7fa3fa1ff71a36e7f0c817fa29 *NEWS.md
0fdad6d6caa6d63de681bd7a978eafb6 *R/gp3sequences-package.R
ae99cfbde422f5658d41672ef27e3c90 *R/sequence-adapters.R
8224943b035f56fb0500ba8653a6764d *R/sequence-advanced-internals.R
9674d52dee8ed2da5120028eef774a28 *R/sequence-analysis-audit.R
759e6faac282e9a7cbdb84957d9cd291 *R/sequence-capabilities.R
aa2738428e896047dfbdfb97d1f245e5 *R/sequence-consensus-groups.R
f56943f7eae4f042863e75b016bd7ff7 *R/sequence-contracts.R
3fef7e5bdb2d9306458e9a0c74058de7 *R/sequence-covariate-hmm.R
7a2c2785e902bdc61cc0bd5409133c9b *R/sequence-data.R
d8989fc8216cb92044a616697a8d7a6e *R/sequence-distances-clustering.R
217b63cfcb5ae5873f164c9b58c479e5 *R/sequence-encoding-summaries.R
d4c8d8148a266bac542d0f1eacc0ae04 *R/sequence-extension-internals.R
08ddec802550efeaa2b8ec3116ff846a *R/sequence-inference.R
294e273cdf7bcb0f3242978d693be5a6 *R/sequence-latent-models.R
97911226020aae6f9a439110936f780f *R/sequence-motif-visualisation.R
5692a65f1df9059b080637f9cfac1a7f *R/sequence-motifs.R
98e52f75870f829b94a337e2dae46ea1 *R/sequence-multichannel-hmm.R
9c9a05ea9aed30911b79f02b0d8cc50e *R/sequence-networks.R
fb2e3d23ddeddb5cbe4431493492dd2b *R/sequence-panel.R
d77ce81762ecd24a83cfb6a4644a61ca *R/sequence-subsequences.R
8aa5c0cc76e1f343b7eaaae28dc1e63b *R/sequence-test-cases.R
1e7d2c151b75be97be54878703c234fb *R/sequence-time-models.R
5030d91a80d7695af516dc91678edabc *R/sequence-visualisations-extended.R
7d07a2a89b321be3c24ee0f494570229 *README.md
d73fd3458308f99d52268ef33653e214 *build/vignette.rds
739ef2a9959e36dd032ede3d92703dfa *inst/CITATION
7747247e35b79137e35fafd33ab0f23a *inst/doc/choosing-a-sequence-analysis-method.R
35ddbe6a1596e9efa2c21ffdaebc80ef *inst/doc/choosing-a-sequence-analysis-method.Rmd
397705d10dfd3833af9f52ee8a69a1c8 *inst/doc/choosing-a-sequence-analysis-method.html
b7642972f74a695d6e2b1a5f7586b2fb *inst/doc/consensus-and-group-comparisons.R
f98b2e459d6285a58b5904135ab58f97 *inst/doc/consensus-and-group-comparisons.Rmd
14c45a1d26ff1dabf201f3bee164fe7b *inst/doc/consensus-and-group-comparisons.html
0d0d926299ef49677df5155dbbc68687 *inst/doc/contiguous-motif-workflow.R
ae01c987b286850022dc7b2c3116f3d6 *inst/doc/contiguous-motif-workflow.Rmd
3b1be0f85a3da4fccc74ad65dbe070de *inst/doc/contiguous-motif-workflow.html
99763d238edae8b0e1e1b97114af3bfc *inst/doc/distances-clustering-and-stability.R
38435a2e403bc16f9bd1e24f388b44f8 *inst/doc/distances-clustering-and-stability.Rmd
e4c29f3ee80ccc6a046a80d0fb7a4954 *inst/doc/distances-clustering-and-stability.html
428c09faf134ecef760134b43a4f1b53 *inst/doc/extended-sequence-visualisations.R
d5be3153aceada881774a316d4f5475a *inst/doc/extended-sequence-visualisations.Rmd
f216de147e08c614545df8ba01c96377 *inst/doc/extended-sequence-visualisations.html
db1db4700db0a691aad87ca74073e7d5 *inst/doc/getting-started-with-gp3sequences.R
4d99ab56d3ba44d60d2745114b3e331b *inst/doc/getting-started-with-gp3sequences.Rmd
4e40190e0ef5ed5fcd2a42d32d497f5f *inst/doc/getting-started-with-gp3sequences.html
05defbff92cdc3dde336aa2b914153a8 *inst/doc/latent-models-and-optional-adapters.R
5bf17ea911f8d4d50e284406e4e90540 *inst/doc/latent-models-and-optional-adapters.Rmd
b98e7ad621b485860d25dc2f37cedc16 *inst/doc/latent-models-and-optional-adapters.html
48a53011f9c7dc3812eaf874343e570c *inst/doc/longitudinal-panel-sequences.R
b83ad704921cf4ff4b52757e69ceff75 *inst/doc/longitudinal-panel-sequences.Rmd
5ac442a1f2343587edf68b357487110c *inst/doc/longitudinal-panel-sequences.html
47e3803026ae7cace2c6626ff881e213 *inst/doc/multichannel-and-covariate-hmms.R
e47bb1ff3802ad8fcd52afe68cbfd27c *inst/doc/multichannel-and-covariate-hmms.Rmd
35fdf8b132d3ab5e06a624d72679a1b1 *inst/doc/multichannel-and-covariate-hmms.html
478ceccc17f6e8fc96ee52aaa04f0fa2 *inst/doc/noncontiguous-subsequence-mining.R
7f665de689e794fa83f30aba8864b000 *inst/doc/noncontiguous-subsequence-mining.Rmd
38462fd6d38271f57de040e4c476551a *inst/doc/noncontiguous-subsequence-mining.html
9381c6797506ba5cc7cb7737f3aebadd *inst/doc/reproducible-sequence-analysis-case-study.R
7f6b653c08df4be069d38a1cf437ca53 *inst/doc/reproducible-sequence-analysis-case-study.Rmd
e2be2975b8da2002543ceeec702a5663 *inst/doc/reproducible-sequence-analysis-case-study.html
5035b8ee84769ca6043cade5529c73ec *inst/doc/sequence-data-validation-and-preparation.R
86283a1086f307ab90a005302a64b36f *inst/doc/sequence-data-validation-and-preparation.Rmd
c6550a1c27fd02f48c05f280992a26c7 *inst/doc/sequence-data-validation-and-preparation.html
f67ee6f75817b2e7b18328022fe28783 *inst/doc/sequence-inference-and-randomization.R
470761960535687738ec9d7d220e424f *inst/doc/sequence-inference-and-randomization.Rmd
e359c8b4bc9a869abc63c1e7dd359f51 *inst/doc/sequence-inference-and-randomization.html
dd7215a921a4fc1b7331b3a53029ba1d *inst/doc/time-varying-condition-models.R
b18741eb1026a20fab383e9f99ae831c *inst/doc/time-varying-condition-models.Rmd
b8b97dee4f8ad5f048559abcd4bd8028 *inst/doc/time-varying-condition-models.html
047f5306c45862ef4ffd5817ce1ce535 *inst/doc/transition-networks-and-higher-order-models.R
cf8679cf654bfa344852ac5691d4e269 *inst/doc/transition-networks-and-higher-order-models.Rmd
62448f1019aefa0b5f3adba36568ceec *inst/doc/transition-networks-and-higher-order-models.html
315d3d153243db7cba60fb5e2b4f7c91 *inst/validation/gp3sequences-validation.csv
4985618249e8f58f4eb71c164337cfb4 *man/as_arules_sequences.Rd
44d4ee92a22aa9b64fc644711b176f7d *man/as_grpstring_data.Rd
d1b1bd55bbd6e37e84441c788d26b7b7 *man/as_igraph_transition_network.Rd
0f501d5590108f6abe4777c1aa5188d6 *man/as_seqhmm_sequences.Rd
3c24e7b3aff9526e5b424cc2ef8b5aa2 *man/as_traminer_sequences.Rd
e0130cf49b28fcc606236f8786baf768 *man/audit_sequence_analysis.Rd
2cc455833036251b7778b5b0984c86e3 *man/audit_sequence_data.Rd
345ac99f3a3bc0b22f3bdfd9aa94f28a *man/bootstrap_sequence_clusters.Rd
e7f5b454dd5fb5785f22e02f2d36bf53 *man/bootstrap_sequence_group_difference.Rd
1661aeb9281c268375340e0f221467bf *man/bootstrap_transition_network.Rd
731eb7d6d1f08f9590cb5b9b9cab3aaa *man/cluster_sequences.Rd
d300f12fae37a0e29e5a6a3072b3097a *man/compare_sequence_analysis_results.Rd
e8c1ed368526132ce53abd489041cf0b *man/compare_sequence_groups.Rd
cbd49fe4ea3abb5d72d49a29909c44b1 *man/compare_sequence_hmms.Rd
1bf418ec74a793cdb2a5ed44b713e521 *man/compare_sequence_panel_changes.Rd
c379d44e77fb248aee0c8c6705cff3ff *man/compare_sequence_subsequences.Rd
499d3f360e2b3ccf83d957128c81e740 *man/compute_sequence_distance.Rd
f898ade067410f6dd44fb6a46f6c8aff *man/create_consensus_sequence.Rd
171ce7ba67f1bf23cd83230b995b7298 *man/create_sequence_cluster_ensemble.Rd
1217c5c9d84eb3f68fef8b132e1f22d6 *man/create_transition_network.Rd
07b1dd1f47882904d2e904e8c44450c1 *man/declare_sequence_comparison_design.Rd
44a79fbf49e8f9637d2cda2db38a762b *man/decode_covariate_sequence_states.Rd
0005a8016b1790d1bb3d5c9ea3fdd23d *man/decode_multichannel_sequence_states.Rd
d54bc6652f6358e079ccfd92b337f05b *man/decode_sequence_states.Rd
ba466907337bdc5674d130fe7662d1da *man/detect_transition_communities.Rd
2c9b82759251bcdb2dc1b3ebc3400fa3 *man/encode_sequence_data.Rd
5d9a0cfb28a277d3133dd91a5284c438 *man/extract_representative_sequences.Rd
5327e702d3be9ad0df5b5db39fca6d1b *man/extract_sequence_ngrams.Rd
5c8cd13734fa1d30542c0e856acf9935 *man/extract_sequence_subsequences.Rd
ebcf2738c03426b18858b7d96e49ef6e *man/figures/logo.png
59647a005b03debc2f8682b4af0aaa3d *man/figures/logo.svg
25fef6b43c91a01fb1cbc5ee8b1a00a8 *man/filter_sequence_motifs.Rd
8986bc2a6fc7b11ef6cddb0930f0a0d5 *man/filter_sequence_subsequences.Rd
a1c1f25457afa40635d96b57b380c21f *man/fit_covariate_sequence_hmm.Rd
2240b32ac093e0102526e4a6c209fe78 *man/fit_higher_order_transition_model.Rd
c348cbf4962e4c1a9c5b14fb1580fe06 *man/fit_multichannel_sequence_hmm.Rd
24a1b49e431349730004da9798ffa54f *man/fit_sequence_hmm.Rd
de8fdaccaaa54e2b5767f371f3735c7c *man/fit_sequence_hmm_mixture.Rd
ef37c2359b28443e75689c7fdd41d7e1 *man/fit_time_varying_sequence_model.Rd
bbf04bd05a4344ffb9a690a29a61b944 *man/format_consensus_sequence.Rd
cc58f3dc3adc6e7b5fc0a04a5585f53a *man/format_sequence_motif_positions.Rd
c66a3ab19df829f75f9f764e1ee38d1b *man/format_sequence_motifs.Rd
537be45fd8ac570e9eb8f4de6698fd77 *man/format_sequence_paths.Rd
bee0233ac67f8c4e78b450ee54579c34 *man/gp3sequences-package.Rd
6857e7da014665057e9fa0514ae7b3cb *man/plot_consensus_sequence.Rd
8e4e0837444fc1c0ddbb4a6b4156e062 *man/plot_multichannel_sequence_hmm.Rd
f796f31449198dcda4a432a3516463e2 *man/plot_sequence_cluster_silhouette.Rd
8b87d85e90a982ed3ec48846c4c23ccf *man/plot_sequence_distance_heatmap.Rd
424e44c245d30aa37a69135345b61fd2 *man/plot_sequence_entropy.Rd
07daff1d8de997077ceec245ce803456 *man/plot_sequence_group_comparison.Rd
01a97cf0b3b7e5c43b58d8adf7455a4f *man/plot_sequence_group_inference.Rd
301d1435ffb104700a2e04b0e4836ed9 *man/plot_sequence_index.Rd
c8cc8d07fa806a0a2872443a1835c9de *man/plot_sequence_motif_positions.Rd
ec18308b1df3e7b5e6c3d5bc0d0a61cf *man/plot_sequence_motifs.Rd
dfa9a8aebeca9a434500cd2061b802ca *man/plot_sequence_panel_changes.Rd
f3b0d6f8d83acaa46e454958db9c556c *man/plot_sequence_state_distribution.Rd
e136d9c3182c9bda88dabc96ac774533 *man/plot_sequence_subsequences.Rd
4ff3c6c36fb5b950ab1acc6e18924d40 *man/plot_time_varying_sequence_model.Rd
d1c458657a0061f4a5fde856c1b28552 *man/plot_transition_network.Rd
1cfb366f6b16143010ac738d2f231786 *man/predict_covariate_transition_probabilities.Rd
1ca4dccbe63464817c0209481870f695 *man/predict_next_state.Rd
35542525cfd9a9c4f0af6e2d6d4361f5 *man/predict_time_varying_sequence_model.Rd
762e7f5288fb44eeaf7a7dc4c2c8efd3 *man/prepare_gp3tools_sequences.Rd
d935e4a4670a650440b4593c5f8b5edf *man/prepare_sequence_data.Rd
a7fc06cfbb261bdc96ee5df37a3e7ae3 *man/prepare_sequence_panel.Rd
07e9edf35d20bb9a5cbf4d727a7e9800 *man/sequence_capabilities.Rd
8063fd36fcf1b12eea5fef979d57cf1a *man/summarise_consensus_agreement.Rd
bc1fa2691ec03186b77cb92834f29267 *man/summarise_covariate_sequence_hmm.Rd
affc4284248a82bece211e009dfd29c0 *man/summarise_multichannel_sequence_hmm.Rd
6981944c7b593ce560a4b4ec53b5580b *man/summarise_sequence_cluster_stability.Rd
dfa03339b1dbe98eadd56eb3db066dfd *man/summarise_sequence_distance.Rd
d6469767c42bc11ac009cec9fc66cdf1 *man/summarise_sequence_group_inference.Rd
6955139617756b1c292aef1c7899d4c4 *man/summarise_sequence_hmm.Rd
0bcdca757e211f70f577f34d137543de *man/summarise_sequence_motif_positions.Rd
23fc2525571b5f0467cfaea7d9775ed8 *man/summarise_sequence_motifs.Rd
d33e05295f10f206146deed8fe9e6c41 *man/summarise_sequence_panel.Rd
824602afbe9c8d92eae04ffbf608776c *man/summarise_sequence_states.Rd
fcd99240720f8cf148964be050b88222 *man/summarise_sequence_subsequences.Rd
4f9767b6c7fe60822f06f94987d91357 *man/summarise_sequence_transitions.Rd
c57395a8282d254b9a54f692750c6c8f *man/summarise_time_varying_sequence_model.Rd
1e69a6c43f83e229e5041aa8254bcbad *man/summarise_transition_centrality.Rd
1d53c4c6c06df94a27ae8f566c542836 *man/test_sequence_group_difference.Rd
6b2effd04d5ebf3e015c9d9bbabe427d *man/validate_sequence_clusters.Rd
85a8d0fb880b10888451219a0cf8f7fa *man/validate_sequence_data.Rd
8cdef1cf2347eeb19bea6748a333fcc5 *tests/testthat.R
2f34fef68bf2b823f5839b9e55510989 *tests/testthat/helper-advanced-sequences.R
db03825ebf246c5116edee7d569a5f40 *tests/testthat/helper-sequence-extensions.R
c5c216270d9791dc429b563e53464097 *tests/testthat/test-adversarial-inputs.R
17dff2fe670d39f8cb148a94b956aafb *tests/testthat/test-analysis-audit.R
29974e2fc3b28cf814b93131170b737a *tests/testthat/test-capabilities.R
3321093ba458a5db58228a1b3e11f12f *tests/testthat/test-contract-invariants.R
ec61d15e855676d2eeb7f13a7a34bac5 *tests/testthat/test-metamorphic-invariants.R
e690399695d7f03f4e0236a35a7e3ef0 *tests/testthat/test-package.R
ad33ce09037ffe78f785959e61c72d4c *tests/testthat/test-sequence-adapters.R
6c7a2e7404598218cb9448d8caa03433 *tests/testthat/test-sequence-consensus-groups.R
9c7c54dfd079e17e5fd9d74a59c24401 *tests/testthat/test-sequence-covariate-hmm.R
cf7cfd5b9222fc73e068b9eacb09682d *tests/testthat/test-sequence-data.R
07f21ee9bf707e45246093f71441451d *tests/testthat/test-sequence-distances-clustering.R
e9a6ac4b54751deb1050a48a8d28f121 *tests/testthat/test-sequence-encoding-summaries.R
a851742daacc8a38b04791fc17850914 *tests/testthat/test-sequence-inference.R
4045be288278482c9a9aeed3f6f9ae9c *tests/testthat/test-sequence-latent-models.R
8cba5749f14d23f11ef5b7b963a7a58c *tests/testthat/test-sequence-motif-visualisation.R
c0097e70abc7ebb1402ddcc3b468a8f8 *tests/testthat/test-sequence-motifs.R
d447a2a8904b935968c6c0f83e41cdbf *tests/testthat/test-sequence-multichannel-hmm.R
952ca5157b384b7c6cd5a12bc2f6f28b *tests/testthat/test-sequence-networks.R
1929dbd32db9fc4f2cadfcff88b493d6 *tests/testthat/test-sequence-panel.R
c9ab6a93a2086f760ca91914e6ce98cc *tests/testthat/test-sequence-subsequences.R
d083eea2fec47179c1ff60ecdd4cac52 *tests/testthat/test-sequence-time-models.R
371410f58a073742af4dceef33f7a1d2 *tests/testthat/test-sequence-visualisations-extended.R
35ddbe6a1596e9efa2c21ffdaebc80ef *vignettes/choosing-a-sequence-analysis-method.Rmd
f98b2e459d6285a58b5904135ab58f97 *vignettes/consensus-and-group-comparisons.Rmd
ae01c987b286850022dc7b2c3116f3d6 *vignettes/contiguous-motif-workflow.Rmd
38435a2e403bc16f9bd1e24f388b44f8 *vignettes/distances-clustering-and-stability.Rmd
d5be3153aceada881774a316d4f5475a *vignettes/extended-sequence-visualisations.Rmd
4d99ab56d3ba44d60d2745114b3e331b *vignettes/getting-started-with-gp3sequences.Rmd
5bf17ea911f8d4d50e284406e4e90540 *vignettes/latent-models-and-optional-adapters.Rmd
b83ad704921cf4ff4b52757e69ceff75 *vignettes/longitudinal-panel-sequences.Rmd
e47bb1ff3802ad8fcd52afe68cbfd27c *vignettes/multichannel-and-covariate-hmms.Rmd
7f665de689e794fa83f30aba8864b000 *vignettes/noncontiguous-subsequence-mining.Rmd
7f6b653c08df4be069d38a1cf437ca53 *vignettes/reproducible-sequence-analysis-case-study.Rmd
86283a1086f307ab90a005302a64b36f *vignettes/sequence-data-validation-and-preparation.Rmd
470761960535687738ec9d7d220e424f *vignettes/sequence-inference-and-randomization.Rmd
b18741eb1026a20fab383e9f99ae831c *vignettes/time-varying-condition-models.Rmd
cf8679cf654bfa344852ac5691d4e269 *vignettes/transition-networks-and-higher-order-models.Rmd
