8e0acbecb366fbc9f4eed246e2135de2 *DESCRIPTION
798411c9314aede944c2b9d0f6286207 *NAMESPACE
f2d87cf6b8d8512e1cc603f0e4bdf879 *R/RcppExports.R
4f4f30816f46517bf91f32d7c3c0a290 *R/plotting.R
198ff40d44f7674db5391db6248d3cdd *R/scregclust-package.R
0fcf8f48d3a56146c83a2f3e8efe24e6 *R/scregclust.R
843a04d7b45510ddf567ba4ac0fbf224 *R/sysdata.rda
d074e0bdc9afa3a4fc909fd6be789eda *R/utils.R
c11c0930f71aac78f560f5d6c659977b *README.md
76161b65639451c966be75488458b3c3 *build/partial.rdb
3c7149e4ea17d7b40d4168bf3b96862a *build/vignette.rds
1379e5d5e1eba842de58d8c8a75acefd *inst/CITATION
42dd425999234b15544cbb09fda7b1a2 *inst/doc/pbmc.R
d73e92b20690469560d710eab91469a3 *inst/doc/pbmc.Rmd
e3e2b84757dc750d0945f99f6b4fddaf *inst/doc/pbmc.html
50e9784001dabce479a7ce46320d3757 *man/alloc_array.Rd
009b3651cf3df29b7f664c34000454be *man/available_results.Rd
9379126b0132e16f76b25aeaf7a845e6 *man/cluster_overlap.Rd
ffb4c5c5c5c60023fb6e7a9da0fc319c *man/coef_nnls.Rd
b5484ae6e75f1e1a634112e3fcce32cd *man/coef_ols.Rd
56af61ab5f8b0754ef8710e3be53d417 *man/coef_ridge.Rd
8fafdd1387b55f358ded35f2d9b84982 *man/compute_adjusted_rand_index.Rd
95cc38e4803aa4d26145015f2d318614 *man/compute_rand_index.Rd
a6f6fc02f71fb07741d335a81d96cbcf *man/coop_lasso.Rd
35f48beb68405c31081e48ef14b2c203 *man/count_table.Rd
8233e5b90cd070c17e8048cf5776aca6 *man/fast_cor.Rd
ad8b53011367cfa5c04a1a5514a7a253 *man/figures/overview_fig1A_bg.png
0081dd84daf079e4e52b3a3d01134613 *man/find_module_sizes.Rd
4e8900cbb40072f707c2e007cc131cd8 *man/get_avg_num_regulators.Rd
d2573422f3ceb9fb37f5256e79113b6d *man/get_num_final_configs.Rd
e2cdaae52ed0c36747901e6b2c21688d *man/get_rand_indices.Rd
f4ea7c1a0776119643969ab616e160bd *man/get_regulator_list.Rd
9682ea9802f41a3b84ca9ec76cd7b0c5 *man/get_target_gene_modules.Rd
4580e9d854549538643b9f31b2be782b *man/jaccard_indicator.Rd
8e229e547a06c88e2a1bbe61904f42ec *man/jaccard_indicator_comp.Rd
ddea64e9a10408e1d847850d4ef56ca0 *man/kmeanspp.Rd
ce6dc72d5b734d4a45fb9ab4aad7710a *man/kmeanspp_init.Rd
835ebdad8e822fc4ecf1467289b22494 *man/plot_module_count_helper.Rd
bfdf03020c5680ec4f3540444e642174 *man/plot_regulator_network.Rd
af72a711fe21616bbebdf8328214627a *man/plot_silhouettes.Rd
313e9a982f62b5571d156a7c76e1e875 *man/progstr.Rd
a908076cdcd39d28aa8d1062fa1b1b46 *man/remove_empty_modules.Rd
09df6bfb6c810f0af0520164702bc918 *man/reset_array.Rd
e0c30557e15469718942ec9b3dacd375 *man/scregclust-package.Rd
118f4f9a7a06cce9b73ced1fc053d623 *man/scregclust.Rd
125ad5e5b9bbffcfe31c777a54f1e9b4 *man/scregclust_format.Rd
daa97c010bf2e676ae525aade3454b3c *man/split_sample.Rd
e2d347f9ad519d45dd6bcf3703472671 *src/Makevars
e2d347f9ad519d45dd6bcf3703472671 *src/Makevars.win
3d4da518e218882c5a0c80cb77e40031 *src/RcppExports.cpp
3bee511e6e9890f7c5e17c3daff9332d *src/allocation.cpp
95c3b20efb6de8e2878e93ce3ceb05ff *src/jaccard.cpp
9df48fa067c8f16ff3505c47126e878a *src/optim.cpp
684303994921b5c16c2abca403b03a44 *src/utils.cpp
be5a77a02ae42b9045a260be21913615 *tests/testthat.R
4489782d9a0017d017f148fcb253f8b0 *tests/testthat/test-constant-genes.R
be4f1397b757d581a67b233e89c20e12 *tests/testthat/test-fast-cor.R
d73e92b20690469560d710eab91469a3 *vignettes/pbmc.Rmd
