d8a50eebafa02fedbd9f06fa226a5c7e *DESCRIPTION
4d65de3e551346f86f42acf5760af7ab *NAMESPACE
1876de4464c4db9ebcc74bc9ea40767e *R/PTM_MarkerFinder.R
edb55dbf703db5095ca2da3acd2b1510 *R/aa2mass.R
e474472ae1e9a38ba5d12c4f45fda68f *R/de_novo.R
9d1f99cdebb11e0b49c3b98b767b9879 *R/deisotoper.R
41c3a16acf4714c5186c481af8c34dfb *R/findNN.R
6c2bd5f48211be54d2ced5b6ec9ed88d *R/findNN_.R
2db37167c5a9c035f6a5152fa5fc2b92 *R/fragmentIon.R
451317ef11b6a2f96b8694a36552047c *R/genMod.R
383914886d1596b45fdde36cd38553ce *R/iTRAQ2GroupAnalysis.R
93c5f4f5632186564153d385761976e5 *R/lcmsmap.R
993b3c12670f50e58369779f11401e82 *R/mascot.R
6842712841339c3928f48636f8e54f7a *R/mdp.R
a952cd0c2a2c62d02c60c0a76e57f455 *R/parentIonMass.R
5f1b00772c810752b08e5ee4e6793a5a *R/peakplot.R
c36eba240126b1af709dad766791c406 *R/pgImporter.R
15ae159f85652a791453d182cc29bdb6 *R/pgLFQ.R
1bdb82885d61c7ee79332a277f5a2220 *R/pp.R
4cbb8fe6382aeb59c0d677174301f4a3 *R/psm.R
6e868aafc3269729b709119825b68f5a *R/ssrc.R
7593968ba9533e62fd8c752f2a8c01bb *R/sysdata.rda
774de031b4982995e5e88cec9f95dedd *R/zzz.R
322a806cc3fc421b44f42cc89f9754bf *README.md
b2bf0bab99afaf41863f48c1dbeed68f *build/vignette.rds
a4b835997fe3fe64238836eb5d979742 *data/AA.RData
a7d9cde11a9f003614841335f8e079e5 *data/HexNAc.RData
ce174ecc08dde8c7e9a20f639f366228 *data/averagine.RData
d508e0a9c898d0ae1334844776f38a24 *data/datalist
d587791a5c9d55fbf7a618be3d5cc75a *data/fetuinLFQ.RData
601922c525f1b02d7f3c2a3b33a43ba5 *data/iRTpeptides.RData
bf9c18b97846ca3619b7ceb5b2e46cf2 *data/iTRAQ.RData
8450919282665051d39daabe6aa183a9 *data/msms.RData
40467c3fd4bcc9388f58320db2e6a94d *data/pgLFQfeature.RData
d25756525079de04b8287ff934c8bd5a *data/pgLFQprot.RData
c234dff499abc2d9f61c97e3d7c4bf40 *data/pressureProfile.RData
daa9c303936ebe822c0bfbebf6bd6733 *demo/00Index
d553d739fc6b78566ed04444d0a461df *demo/PTM_MarkerFinder.R
f45c1b16c999f2c36134eecadb373909 *demo/peakplot.R
e8e6de925245a465d2ac421ee0628597 *demo/pressureProfile.R
950fc7588fa2221d07ea26e4eb46a116 *demo/quantification.R
2e96a497a8a8a6c6f07acbe14f30ac92 *exec/protViz_annotateSpecLib_with_protID.py
670d6468c76929c27cc04bea7df18825 *exec/protViz_annotateSpecLib_with_protID_split.bash
006d9ad3aca2c547707fb572255bb9ad *exec/protViz_bibliospec2RData.py
386ed045a439e0339d35262e9d719450 *exec/protViz_dat2R.bash
ca2fe9383a60b3c8a0d63481dbf38f9d *exec/protViz_extractPressureProfiles.bash
6e56290871832dfca27d85b031322397 *exec/protViz_fun.bash
7c4f3c80da1c09aa515923b10fc65776 *exec/protViz_mascotDat2RData.pl
61612465d8709a41239b82546bdf8876 *exec/protViz_mgf2RData.pl
43b1b837a44e4473528a37c7781d44cd *inst/CITATION
08d138ae6eb699915e169bf84192a420 *inst/Dockerfile
94ef0ab20e3d6dc4c01c1a9f672dd167 *inst/NEWS.Rd
a15942351a7fbebc2e462b34f080675b *inst/doc/PTM_MarkerFinder.R
7081fa3674d640602164d6e6a9bfd477 *inst/doc/PTM_MarkerFinder.Rnw
264cd31e2034f785ed7fb48eb8b078fd *inst/doc/PTM_MarkerFinder.pdf
1077d856468f1626727e23f4adec9731 *inst/doc/poster.R
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9ef75cc5adfffe9ced7ed50c03228872 *inst/doc/poster.pdf
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5e0158aecdec5b3201dd86191493af86 *inst/doc/protViz.Rnw
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4a55f4abeb61c0d63ed5021ce15e03f2 *inst/shiny-examples/PTM_MarkerFinder/ptm_marker_finder.R
a292341302241cbf4ffc1c19e8851771 *inst/shiny-examples/PTM_MarkerFinder/server.R
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77ec94c4f0e76139a081e98a27a1c5fe *inst/unitTests/test_aa2mass_main__verus__parentIonMass.R
160cd629849a1f616b961a0c51a9555a *inst/unitTests/test_deisotoper.R
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3e54b239107ead34b9c31ad712f05c44 *inst/unitTests/test_psm.R
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7c991c49284819c1e7e26fb98c8fdd50 *man/HexNAc.Rd
80a8597c9269a28dec428c005e85b5ea *man/PTM_MarkerFinder.Rd
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43308db08c425924502856cec0ab200c *man/aa2mass.Rd
d006d80ffcb7c447fc10c4aedd44e402 *man/as.psmSet.Rd
489d35474a3d7cada544fe83b0edcee4 *man/averagine.Rd
b164fa16c5abdbd02328de98905ef623 *man/de_novo.Rd
73f831a090be3033cd3a452a44067663 *man/deisotoper.Rd
a61b49e4c574c28df134635ad3d3b0a3 *man/fetuinLFQ.Rd
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8f40a136d0cbb23143b2a97c277aae27 *man/findNN_.Rd
d8272e6d01f4e1568087e91ecd3c3d5e *man/fragmentIons.Rd
3f2228152c2bb7caff29ea9e450bd78c *man/genMod.Rd
17dfd02637a460a2a333f75ca66e594c *man/iRTpeptides.Rd
2e31ca5b84385e4b4f73073444a22cda *man/iTRAQ.Rd
c849ce9d6aaac21264721286b0a618b1 *man/iTRAQ2GroupAnalysis.Rd
9ed87aaeae888c99d5ad34b893bdd6e6 *man/lcmsmap.Rd
31311057f3fd9850ada7770136048cef *man/mascot.rd
71c22b57ffb7789db6cb367f1e084d80 *man/mdp.Rd
3fa37904e15542a9d8047313c354b249 *man/msms.Rd
fd75f35f293a0e62ec5a2831daa3fe95 *man/parentIonMass.Rd
c76406cae65900285f77fecd7886417e *man/peakplot.Rd
a41003b07860d285e922dfbfaded7fff *man/pgImporter.Rd
94216a2c8bdf765e9c6a2acb305101cf *man/pgLFQaov.Rd
90160c4ae4961414e36744d72b8f83bb *man/pgLFQfeature.Rd
d5868088a1788699f969461527899b27 *man/pgLFQprot.Rd
57487772317b6f64a97db714173e7cb4 *man/pgLFQtNpq.Rd
8cee211c76eec2b80625377908f9316f *man/ppp.Rd
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4ca6d1cf44e7392671a03781f3887f2f *man/pressureProfile.Rd
e2fd6497f006c1236fc15809e5a45996 *man/psm.Rd
94a4430ee28b2091305d735a831b9763 *man/ssrc.Rd
99acd5c396b224ad45b52dc06752efe1 *src/Makevars
95839cb7a54933126578c8e51313b81a *src/aa2mass.cpp
7ed16d8640f6152e015319c911fb3a07 *src/base/chemistry/iisotopeenvelope.h
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77986b618519e5e1c413a7bca8040378 *src/computeFragmentIons.c
53b2688824c377621e1b8ae2b24afcb4 *src/computeParentIonMass.c
9007e5c3aba69100c454693baa6ff556 *src/deisotoper.cpp
08bf96dec9f8910f5e301d7fca7cc20f *src/fcat.c
285670e8f3bb12d7825d7591779e9432 *src/findNN.c
21f4f0607974821eb394b62d6eb52b26 *src/findNN_.cpp
2e35dea87627fbfa4bbca0cd161be4d8 *src/protMass.c
a0abcbe6b8f34dcebbc8339b1fc4b675 *src/protViz_init.c
75f3ba46f2e925198b12edf3a8d73f5d *src/rcppdeisotoperenvelope.h
42adb67f2cafa7634115ec6edcb8454d *src/tryptic-digest.c
e588ec0224c1f42429555e1958365ff8 *tests/runTests.R
7bd4cc5fff929b3db651894b7f02419a *vignettes/HexNAc_PTM_markerFinder.csv
7081fa3674d640602164d6e6a9bfd477 *vignettes/PTM_MarkerFinder.Rnw
a6354dfd36a92d4cf246a3c9df060205 *vignettes/graphics/FGCZ_Poster_Header_2014.pdf
0e186a7c05ec49853fdf4bb2e82a8110 *vignettes/graphics/protViz-016.pdf
419d67b644891646e3a1d468e7e87aa6 *vignettes/graphics/protViz-018.pdf
53c47c5fa38b3fb65c3cc64a102ac884 *vignettes/graphics/protViz-ANOVA.pdf
a5633480bc35b43e0222036c8f9c56f0 *vignettes/graphics/protViz-LFQtrellis.pdf
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1ec7e59a1ca83b22d53022513334e6b4 *vignettes/graphics/protViz-digest.pdf
a9d6fb39de203915647433dc100138ba *vignettes/graphics/protViz-featureDensityPlot.pdf
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cd175d650a8dce62b8e55f0aa408fb68 *vignettes/graphics/protViz-iTRAQboxplot2.pdf
fd0b01a1a0547d20faa1edeb7c540317 *vignettes/graphics/protViz-iTRAQqqnorm.pdf
20c5e070211b9e0b77901ed96367af80 *vignettes/graphics/protViz-image1.pdf
16fc0cfa5ceef725c42dfc94e37e26c7 *vignettes/graphics/protViz-image2.pdf
069e274d16fb8dcc02489156ec19889e *vignettes/graphics/protViz-insilico.pdf
aa88eb8659dbae1c28a67e42c0f621da *vignettes/graphics/protViz-peakplot.pdf
14d757679fa4b31b462dbbadd39181ad *vignettes/jss.dtx
88cc6b614e748c45aa30c0c703ccdb42 *vignettes/jss.pdf
b9564ddd59a06782310989e8f33db55e *vignettes/jsslogo.jpg
e290e4e9de78f777fda771e2dd79a9f4 *vignettes/poster.Rnw
5e0158aecdec5b3201dd86191493af86 *vignettes/protViz.Rnw
612de36ede11fddefc82ece52f3158a3 *vignettes/protViz.bib
