e043cef7be1d4049b1f182052b200e1c *DESCRIPTION
1133d902079cec8e755205fed12fd380 *NAMESPACE
f9b7531f117d6b3ef3da9e9f752ca24e *R/F001.load10x.R
68bfaf691e6d39e129eba9d46208115d *R/F002.data.aggregation.R
7b94d4d5e0335b2f20e655ae17957dd6 *R/F003.make.obj.R
87466fc291d20a75fd2ce5bc2b480603 *R/F004.qc.stats.R
3feb66e2825f7bc87ee8c5784bcfd77d *R/F005.stats.plot.R
5cfddba09b371d6a3181f70aead5651f *R/F006.cell.filter.R
a1f5cb6f92d880381b56e48e10e7b5a3 *R/F007.down.sample.R
f0659a853f550f3ac89aba89cba9feb9 *R/F008.norm.data.R
88d62ee4eabb147dcc67e1b7190b34f3 *R/F009.data.scale.R
68c7b05da4358b5f1ebeb791da6e6a2c *R/F010.gene.stats.R
749e6fd0ae26c5d8034b30ff4ddcb60b *R/F011.make.gene.model.R
472061ae0c90721543d5f1694b8723d9 *R/F012.run.pca.R
63b4588564c68b0e39879c4da79888ce *R/F013.opt.pcs.plot.R
a3cf5d6f07c27afc43e1fef28a145a09 *R/F014.find.dim.genes.R
7bcb0c988aa50a6bde55348bf3717d3b *R/F015.run.clustering.R
91b6149f8c3330c1c022e688128754a9 *R/F016.clust.cond.info.R
78551e063f6c8e5a5fcd80cc51bf0e01 *R/F017.run.pc.tsne.R
a26517fe29bd827a16825f78e6c0b2ac *R/F018.run.umap.R
20046fde5a369e72bda205d4465989a4 *R/F019.run.diffusion.map.R
24a29f3d19d8110769b4c65927fbbf6e *R/F020.cluster.plot.R
618ad981bef2851b5486a6ba43733f0c *R/F021.clust.avg.exp.R
6a218b5bfa19d7f30c1766458bf66815 *R/F022.run.imput.R
3f4206a73aa5cc909dc1e38d3b765b88 *R/F023.cell.gating.R
9e95a42d0f3cea5e517093104953b26f *R/F024.gate.to.clust.R
0cb70093e9aa38e7a2e6a3c14db7f07e *R/F025.change.clust.R
fac115a69c0753e89afc781c0cf5655e *R/F026.clust.rm.R
ce5050ee3da1466395dfdb9f43212551 *R/F027.clust.stats.plot.R
fe8b697b34c3f27301946f504039a8ac *R/F028.findMarkers.R
ec4cd506284ecb28ca8f943d8e22cba5 *R/F029.top.markers.R
f5d406657c32c5459dea3c84c236389f *R/F030.heatmap.gg.plot.R
973de441deb6f8b59096c600313da33b *R/F031.gene.plot.R
31db1dfe262eb263254f493a1025b638 *R/F032.pseudotime.tree.R
17bf11116f5c2ea6008b2de01f58ce53 *R/F033.cell.type.pred.R
e09f630e608c057b89b0658a02ae97e8 *R/F034.diff.exp.R
b2a3aa2b0b0948a33000ada4bcf6342e *R/F035.volcano.ma.plot.R
7b1ad615a9c4f9195538c96ff652a450 *R/F036.add.adt.R
745d8f9b02d4edf17ffd657aa6a64193 *R/F037.norm.adt.R
cddb4c94090e0776aece156722429b54 *R/F038.adt.rna.merge.R
728578de940a97ac40b87a05070d7c8c *R/F039.prep.vdj.R
dcaa01da425f27abaffef7e07dac36a8 *R/F040.add.vdj.R
79425aa54324c8f2914d659b5ddb904e *R/F041.clono.plot.R
33aa72d09bcaaf296dbdc8da30016f03 *R/F042vdj.stats.R
15f1dbcf7b5e7246557f2dce64190974 *R/F043.run.tsne.R
d7c605771f6a712e0246d70be0ad9d1a *R/F044.myclass.R
e5bf9b47fd40ac13fe0a686e302f00da *R/F045.cc.R
39f62b0c49ca507f4c2e39d9e2d07f40 *R/RcppExports.R
e4d515557cb90decc2901e8d743b74fb *R/Rphenograph.R
910a35f460b4ebe6b09013abd883233a *R/cell.cycle.R
1cafd99eec68bbd68d66b920c66dde3b *R/clust.ord.R
94cafaaa6cd55259c425fcffd59f7638 *R/data.Sphase.R
14d8e5431ff5482a15bf5c1ea248ec7e *R/data.demo.obj.R
01ec88c6093c3b29cb7c8b3c4716da7f *R/data.g2m.R
9f95373c5f76078ff1ce30cb76330c95 *R/findKNN.R
28d1284b1ad8488fdc9df667ef5ca338 *R/gg.cor.R
031ad88bd947ac5921ecfea08db1eaea *R/globalVariables.R
39d2d3a8235487fca3121865164ee241 *R/hto.anno.R
ae13ae89677c46e1430d1b8c026f6cef *R/iNet.R
de33394fe73544f9c132f91437304a51 *R/iba.R
7db9b62240c8485378b537e638161b97 *R/iclust.R
e810b98bdf4c5d6566a944eb870c1d45 *R/k.myImp.R
d1e1c07fe92bcafb8ca3fda14d28b578 *R/k.pseudotime.R
395dba6b1863cae4fa45bad1881d4300 *R/k.run.cca.R
4fb164c49e403ce989063faebae7f47c *R/load.h5.R
f02a92e54bb073ee86e778259063ab59 *R/run.anchor.R
c90d4cdc705c99f7295eb8a801904778 *R/run.mnn.R
7398d54a3086eb17c28fd1d0658377d3 *R/run.phenograph.r
09f2a4653eb9fdfc69012b498d692a79 *data/demo.obj.rda
c8626f6a332dff8b9b29c2b8e24352aa *data/g2m.phase.rda
33a2facc7b2989ec2df1dd0b6db1fb37 *data/s.phase.rda
c7ca1dfc87cd89075d910b7f66352f21 *inst/CITATION
7f9381e1b04e135d3d6d0fc8a88403bc *inst/extdata/G0.txt
22e57f4569e132d13d201ac8f9f1d6b3 *inst/extdata/G1S.txt
15c2c58ff0bf7496bd98dd8d3d746d05 *inst/extdata/G2M.txt
3b6602c1fcbc77cafd60b5058d1a315b *inst/extdata/M.txt
bce1050595c4316cfc465165cf1ef4a7 *inst/extdata/MG1.txt
83c8c44fde25e7262a9f25d8df94c6ef *inst/extdata/S.txt
de78fb4613780372863753852fc03f48 *inst/extdata/all_contig_annotations.csv
06ced81080d1bae9d8f38a2ef20880fb *inst/extdata/demo_data.txt
805cfc956fe1b8445048f5f029738836 *inst/extdata/dense_umis.tsv
abdd67c8870e90c6478a8d72738e5730 *inst/extdata/filtered_gene_bc_matrices/barcodes.tsv.gz
14d4f657ac05179e2dfbacc5ea029dfa *inst/extdata/filtered_gene_bc_matrices/genes.tsv.gz
11ac1abe9f1f55dd29a2759ec0856ef3 *inst/extdata/filtered_gene_bc_matrices/matrix.mtx.gz
332c7db9689525461b991c5971f8a209 *man/Rphenograph.Rd
a7b290f1ae4c746a7a532455100fdd3d *man/add.adt.Rd
80da6b8cd84665d1bf3954da85685617 *man/add.vdj.Rd
64a10bb53a666936a8db09e6dbb4482b *man/adt.rna.merge.Rd
0839b9d631b22caed231481dbcb5b61f *man/cc.Rd
56469c710fec1fe522ea525ce0808aad *man/cell.cycle.Rd
4b03d2fddd6fd36ddc1ea31bc67a7c6a *man/cell.filter.Rd
ef18f3cd8aa83b020ed2fc9139d1a3d7 *man/cell.gating.Rd
c92add27de70523d0479c96e6a87430f *man/cell.type.pred.Rd
b5d8727bb2b114b28788e2f55e69b178 *man/change.clust.Rd
700f5022e955cabf872d7d2cdae5ad20 *man/clono.plot.Rd
664df925784c7883e88e1b64bf15d181 *man/clust.avg.exp.Rd
a33988936cb2d48ba3663d66940013dc *man/clust.cond.info.Rd
889692fa33a19b01b658ed35232fc48b *man/clust.ord.Rd
03b6cc38aa5d31431dc7c686c4ee73a5 *man/clust.rm.Rd
7eba209a66e7d73246b1738f99239537 *man/clust.stats.plot.Rd
442de0137e66a8b813bb8738d5ec70f2 *man/cluster.plot.Rd
8f147e1c444cfd2b2ff0397c83a9bc26 *man/data.aggregation.Rd
dc29192c345045221b39062631f7bbd2 *man/data.scale.Rd
65d2a66e8e5cf5810d145b231aeee24f *man/demo.obj.Rd
540d6b2945f9033097183a82900f992a *man/down.sample.Rd
4c02328ceef06729f2f3ef53c96cd469 *man/find.dim.genes.Rd
d96fd0c81484e0e5133fa1d5cd07ec8f *man/findMarkers.Rd
637e9584d222cbaee4808a673cc375d4 *man/find_neighbors.Rd
7d9beadbdc09f09462a45dd7ec73afa9 *man/g2m.phase.Rd
df5d432802765166c5752af3831547c6 *man/gate.to.clust.Rd
5eec24cb94e98727fb595a990dc5248f *man/gene.plot.Rd
45e6bbf729b285672e337a235454f698 *man/gene.stats.Rd
9dfd1dca863480fe5cf3b76db7ad2730 *man/gg.cor.Rd
25e272d7299dc3c6d69fa62d263c47ea *man/heatmap.gg.plot.Rd
69fafd1df8f1007cd1ec3ba0c3a3865d *man/hto.anno.Rd
d3f452b7e27b4d93bf66f00645c6bf5d *man/iba.Rd
fa8af9f2cdd138704f9c7b285c182f16 *man/iclust.Rd
82b2f795f5efdeeed1b8b7c566995763 *man/load.h5.Rd
184e0e7b1e0f3bbc51112412d43f8575 *man/load10x.Rd
5b48886568afe0e3e55c66c814cad0ad *man/make.gene.model.Rd
b94dff83dc8a2eb0c239d4b82745e1a1 *man/make.obj.Rd
d4ee33020af5294b554b29fd46eaf39c *man/myImp.Rd
d53c5d57c22686b99babc8b80010d463 *man/norm.adt.Rd
ce1f60f3c56c8af210e88ce162ffe31b *man/norm.data.Rd
41eec4a028f4f64c99c265214ae01acc *man/opt.pcs.plot.Rd
0db19136f09637f3ebc8c90e4dd39575 *man/prep.vdj.Rd
dd538401df061569a81237bde16ebf57 *man/pseudotime.Rd
233f56d0ef9ca4e54157e0dcf1a19d70 *man/pseudotime.tree.Rd
1461b0ac2e97e2c7ee88c04a29bf781d *man/qc.stats.Rd
701e259c12f9967f2cfa03906f626aed *man/run.anchor.Rd
9d27fe45c21b778770006238fec904ce *man/run.cca.Rd
17c4e3f61aec58bf7a2832c95ebd95ac *man/run.clustering.Rd
8ed5dc2d8140a56da3dc8198747d76d1 *man/run.diff.exp.Rd
2e76423121901ac131247aaded1347dc *man/run.diffusion.map.Rd
4de49a43c0d918bd042fa67940823026 *man/run.impute.Rd
99c969d525920ef06ec6d0575a5f6615 *man/run.knetl.Rd
108df91e67534e4ae2a38a11698beacf *man/run.mnn.Rd
95074741c38f915cd041d69a32fe5e0c *man/run.pc.tsne.Rd
e7cfb50a68128f9fe1207335e93fac40 *man/run.pca.Rd
551fb1b2d487353dd1d22e937a056cb6 *man/run.phenograph.Rd
009f62b3ee80e2d8f01fe4b3cdd2813d *man/run.tsne.Rd
3f1547f5a80760d0f70f97bd64249142 *man/run.umap.Rd
2847de1a8fe67de1b1b11a0d562e68ec *man/s.phase.Rd
34aa8e75cb478fa0beb66261ec557816 *man/stats.plot.Rd
07a6a62564b3514bdd5c91c0d93c1390 *man/top.markers.Rd
94d73c70d30372b8f43eeca50a56ec52 *man/vdj.stats.Rd
cc3d8d0276bb1961a41bf0d14d4563da *man/volcano.ma.plot.Rd
f5ef2119063d1b6162d39c392a447959 *src/RcppExports.cpp
0bab9c35614b4113f5fe4da7e1aa7245 *src/jaccard_coeff.cpp
