fb50c8a02531d15dd990e3306760967e *DESCRIPTION
f13e7c01210fd46b1d2cfe9e61ff1270 *NAMESPACE
936ee704d7e52a6d9223111b639d7cbb *R/ISOpure.model_optimize.cg_code.rminimize.R
79e074c017f05cd36f5b1b1b55c4675b *R/ISOpure.model_optimize.vv.vv_deriv_loglikelihood.R
950161c7a8bddba0f0bd11fbad622688 *R/ISOpure.model_optimize.vv.vv_loglikelihood.R
0590a6fc2d4e39696b66bff0f9c163c1 *R/ISOpure.util.logsum.R
da1750a01c19ff4109a2969066a66a3b *R/ISOpure.util.matlab_greater_than.R
38bbb0c5ceb2887cf17dbc9a1973cf84 *R/ISOpure.util.matlab_less_than.R
4bc9ca6f7416f344bb4eb886c8f2098b *R/ISOpure.util.matlab_log.R
b7096b8cea6ae5ad16bc7d140348c497 *R/ISOpure.util.repmat.R
832c301d922da2040237fda811c6a163 *R/ISOpureS1.model_core.compute_loglikelihood.R
2c1684c19ab8065c5eb41d78ece505a4 *R/ISOpureS1.model_core.learnmodel.R
e6b7b1344f1a6039153a2e13291ff183 *R/ISOpureS1.model_core.new_model.R
a8042ef67e21199ad6cef43346dd52ba *R/ISOpureS1.model_core.optmodel.R
17e61bb8d34e26751f69d133cb43132f *R/ISOpureS1.model_optimize.kappa.kappa_compute_loglikelihood.R
82b3252189f0fd3d6ea6673ddb9b8b46 *R/ISOpureS1.model_optimize.kappa.kappa_deriv_loglikelihood.R
e2903e9a483bbb6e5926a490c6742fd6 *R/ISOpureS1.model_optimize.kappa.kappa_loglikelihood.R
a15b9ea1cc2cec8558a99c2757b078ce *R/ISOpureS1.model_optimize.mm.mm_deriv_loglikelihood.R
44572357a36289da01dd734deb9010c4 *R/ISOpureS1.model_optimize.mm.mm_loglikelihood.R
9de770d5077531276d66a25c3da71579 *R/ISOpureS1.model_optimize.omega.omega_compute_loglikelihood.R
2b58787acfd3d480c39d3afe8a31b278 *R/ISOpureS1.model_optimize.omega.omega_deriv_loglikelihood.R
84b867f54f29790a70d852d959231d21 *R/ISOpureS1.model_optimize.omega.omega_loglikelihood.R
d012e1f6ca7c32364d5d67eff0f3c822 *R/ISOpureS1.model_optimize.opt_kappa.R
dfbc92b7fa506329cf377e6e1b73dfe8 *R/ISOpureS1.model_optimize.opt_mm.R
c0dba4081b67edd708cc1a3ed359396a *R/ISOpureS1.model_optimize.opt_omega.R
e723590b5233d4888eb6e3d243077ca2 *R/ISOpureS1.model_optimize.opt_theta.R
1c290fc9aef2faffe97aea9ba1fbd4f4 *R/ISOpureS1.model_optimize.opt_vv.R
0bd8067c15c2b74cb2fa78acdfe591a1 *R/ISOpureS1.model_optimize.theta.theta_deriv_loglikelihood.R
430826eeaa96b9caaff447d05165cc72 *R/ISOpureS1.model_optimize.theta.theta_loglikelihood.R
16154e677a18a3ce458a749737e94d0f *R/ISOpureS1.model_optimize.vv.vv_compute_loglikelihood.R
d56369dae58ca44359de1c176501856a *R/ISOpureS2.model_core.compute_loglikelihood.R
0f256045b3d1d0146ff2d90dcf115fb0 *R/ISOpureS2.model_core.learnmodel.R
b8092e41b220dc53575e6cb7fb7d1939 *R/ISOpureS2.model_core.new_model.R
7ea4ed7f47d42c52bebbfcdd38cb5d75 *R/ISOpureS2.model_core.optmodel.R
17e063aa4e8402e527d70a56d45d9cca *R/ISOpureS2.model_optimize.cc.cc_deriv_loglikelihood.R
5eeb0096562d6986490d8c5429eeedfe *R/ISOpureS2.model_optimize.cc.cc_loglikelihood.R
8713612138b985f30c694ca940c19c7c *R/ISOpureS2.model_optimize.kappa.kappa_compute_loglikelihood.R
a72e5cb7de744e80767ada1e164fcc46 *R/ISOpureS2.model_optimize.kappa.kappa_deriv_loglikelihood.R
6797af12c7ee417e706f396f5b04bda9 *R/ISOpureS2.model_optimize.kappa.kappa_loglikelihood.R
a4728651a5333d7bf6b1bcec30d6db46 *R/ISOpureS2.model_optimize.opt_cc.R
34dadb17b288cfddf04388963df1a312 *R/ISOpureS2.model_optimize.opt_kappa.R
59957134ab8dec2849bc78f03a57e884 *R/ISOpureS2.model_optimize.opt_theta.R
4bf8191fa23f6ebd285a1189ac229eb1 *R/ISOpureS2.model_optimize.opt_vv.R
b1817fd2a972afa6e762a2c0a31ce007 *R/ISOpureS2.model_optimize.theta.theta_deriv_loglikelihood.R
827c10dc9969d553da6242591888b714 *R/ISOpureS2.model_optimize.theta.theta_loglikelihood.R
5dd8cd6e292e7b58571d60e632f48eb6 *R/ISOpureS2.model_optimize.vv.vv_compute_loglikelihood.R
356ae45f6c9108c2ace0e34ce3e8bb77 *build/vignette.rds
4334dd430dc42fed7c7a288aa90da923 *inst/doc/ISOpureRGuide.Rnw
07f92adbee52860189ed9607712a427b *inst/doc/ISOpureRGuide.pdf
400274be6ed37b8f782ffc0f7592e27f *inst/extdata/Beer/beer.ISOpureS1model.2500.transcripts.43.patients.RData
99b40019d00dfac02793b45ce73f375c *inst/extdata/Beer/beer.ISOpureS2model.2500.transcripts.43.patients.rounded.RData
f859ee014bf19ee25e7d0f3c0baf758a *inst/extdata/Beer/beer.normaldata.2500.transcripts.RData
29e129a6bfd53ec889e772a056bac62b *inst/extdata/Beer/beer.tumordata.2500.transcripts.43.patients.RData
e87210d788c6f3d68075f2db7857bd59 *inst/tests/test_ISOpure_step1_beer.R
294ce88e64ffad5ff3c0d398fd7cb957 *inst/tests/test_ISOpure_step2_beer.R
d050b17238026ab13637ef556eab5645 *man/ISOpure.model_optimize.cg_code.rminimize.Rd
ee0c8da1a87d175aca0872e261cc0327 *man/ISOpure.model_optimize.vv.vv_deriv_loglikelihood.Rd
17653d485416a066a947fa4565fd43b0 *man/ISOpure.model_optimize.vv.vv_loglikelihood.Rd
4d21d611eedbd5af9e83d6a6d58372ad *man/ISOpure.util.logsum.Rd
771de52e1b56c7cb30312a91c1c71754 *man/ISOpure.util.matlab_greater_than.Rd
023855cad2e5f444c336455df9dc88a1 *man/ISOpure.util.matlab_less_than.Rd
50cdefb90050d24534680bc09d36680f *man/ISOpure.util.matlab_log.Rd
1cee07c99eacd82954465b0ef6f9bede *man/ISOpure.util.repmat.Rd
8f56b42d9f1333a16bf7f7a8d52c3a7f *man/ISOpureS1.model_core.compute_loglikelihood.Rd
774ed88d6aa166d7a5136c5b6ceb8df2 *man/ISOpureS1.model_core.learnmodel.Rd
bd7b36271e80ac288ae5909c7ac3ee8a *man/ISOpureS1.model_core.new_model.Rd
1e60534bedb55148606fe50c5f31af42 *man/ISOpureS1.model_core.optmodel.Rd
7a5aa214393e9265a330fdb6e1e28712 *man/ISOpureS1.model_optimize.kappa.kappa_compute_loglikelihood.Rd
ed3032ecb8b45426b9e2658a4621af4e *man/ISOpureS1.model_optimize.kappa.kappa_deriv_loglikelihood.Rd
0ea5241cf6caff57b1360589ac41b5af *man/ISOpureS1.model_optimize.kappa.kappa_loglikelihood.Rd
20c506e90e34d09e0dca4743f168ab97 *man/ISOpureS1.model_optimize.mm.mm_deriv_loglikelihood.Rd
b6eafaee806ca44de6c05e8efd9bfb0d *man/ISOpureS1.model_optimize.mm.mm_loglikelihood.Rd
6694da8e660b06fb675f83da71b329dd *man/ISOpureS1.model_optimize.omega.omega_compute_loglikelihood.Rd
25c4e22cb5bf1c645058e0fd7abc5ca9 *man/ISOpureS1.model_optimize.omega.omega_deriv_loglikelihood.Rd
5490e7b492dd4aaa8f5f67565bb8282d *man/ISOpureS1.model_optimize.omega.omega_loglikelihood.Rd
ce410b26b31f3ad595fdb5ab77676bb4 *man/ISOpureS1.model_optimize.opt_kappa.Rd
8301440e368657bb4f4ad61805d2cb07 *man/ISOpureS1.model_optimize.opt_mm.Rd
e1c4701455fb0671c872d83680451636 *man/ISOpureS1.model_optimize.opt_omega.Rd
6d7d510b9ac16e6464c1d8f4e24aa353 *man/ISOpureS1.model_optimize.opt_theta.Rd
94e233ede30f83fc006d0f770b2dd213 *man/ISOpureS1.model_optimize.opt_vv.Rd
d5bbeaff5c9566b37cb24c418938bfeb *man/ISOpureS1.model_optimize.theta.theta_deriv_loglikelihood.Rd
402a4ab5620ec52a72c8909738043bdf *man/ISOpureS1.model_optimize.theta.theta_loglikelihood.Rd
ffa0c6e8e173a9819b07f47c3cc15a88 *man/ISOpureS1.model_optimize.vv.vv_compute_loglikelihood.Rd
8f089f6903a2bcaac748ce7fde9a7506 *man/ISOpureS2.model_core.compute_loglikelihood.Rd
0207303afbcd2b19d19308833dcabe32 *man/ISOpureS2.model_core.learnmodel.Rd
054cf0d5b31d8e6be9afdd37972dbb4b *man/ISOpureS2.model_core.new_model.Rd
53e063804381d13bfc95969906d7bd4e *man/ISOpureS2.model_core.optmodel.Rd
ab4b28893c2b4808ffa62a44caa71341 *man/ISOpureS2.model_optimize.cc.cc_deriv_loglikelihood.Rd
889c6a1b610f78afcca5176d1881996a *man/ISOpureS2.model_optimize.cc.cc_loglikelihood.Rd
c4b5e182423c1511ebe0096de6b360c0 *man/ISOpureS2.model_optimize.kappa.kappa_compute_loglikelihood.Rd
f50e204fce169d7b171c4cb3b44943d9 *man/ISOpureS2.model_optimize.kappa.kappa_deriv_loglikelihood.Rd
bc501225a9869eab08476e900cc45cd4 *man/ISOpureS2.model_optimize.kappa.kappa_loglikelihood.Rd
eb621389eb9af3fd3dc41ca7c1595f8f *man/ISOpureS2.model_optimize.opt_cc.Rd
f3571204562208487257512c76cfc227 *man/ISOpureS2.model_optimize.opt_kappa.Rd
7df4f06b9eba84189a0054c5f4866fb4 *man/ISOpureS2.model_optimize.opt_theta.Rd
3c6cb07b153da9bb7f0f57a22074c47e *man/ISOpureS2.model_optimize.opt_vv.Rd
1376a66dc5d0deaf797e9b816c123f3d *man/ISOpureS2.model_optimize.theta.theta_deriv_loglikelihood.Rd
45618406174634a634dfc1f54f3cf857 *man/ISOpureS2.model_optimize.theta.theta_loglikelihood.Rd
44e5ab39d414948d039309c67c825ec1 *man/ISOpureS2.model_optimize.vv.vv_compute_loglikelihood.Rd
51d9946618e7f1e4d09bd4803caffa90 *tests/test.ISOpureS1.model_optimize.kappa_vv_omega_functions.R
949171e4ce5d03aa6ca47ea0442a05c9 *tests/test.ISOpureS1.model_optimize.mm_functions.R
9cb73d78b9b7de37ef1d27e870fbee75 *tests/test.ISOpureS1.model_optimize.theta_functions.R
f9f3908fb1d26afe11eecb0c4c755626 *tests/test.ISOpureS2.model_optimize.cc_functions.R
142bc35f6159bdc1377ed7bd6dc515c8 *tests/test.ISOpureS2.model_optimize.kappa_vv_functions.R
067078820d72e122312c185be3fb94d9 *tests/test.ISOpureS2.model_optimize.theta_functions.R
4334dd430dc42fed7c7a288aa90da923 *vignettes/ISOpureRGuide.Rnw
