4b2b6fb0a63ef89dbfbf3762bd06f88f *DESCRIPTION
d9c2d56b08ec4ad730418c5de1c75310 *LICENSE
704b2787a960a74e161d92be5ffe74f8 *NAMESPACE
001fd2e414a97af73c44e567a518453b *NEWS.md
23fb46d6fc1a925e464e8f5d92a14295 *R/adjust.R
68e6758d1fbf491ca268a84956acc064 *R/data.R
c4ef77f9692812455738067f84214e1f *R/dist.R
dd882764f6df9386e2409a830c717b68 *R/epinow.R
2e39550ee522b7618abf614093a35882 *R/estimate_infections.R
c739f357a3e099a44801135a91812bc5 *R/forecast_infections.R
5bdb8d75d77c09070c71cfe7d8707b35 *R/get.R
df08ee46c2829db33542d1aff95ebc46 *R/map.R
0041c5cf660ffda2e4bf4ef6f9e52c82 *R/plot.R
7528ce71971a0fde0e8f5513fb28d55a *R/report.R
17d5662c9456ebc5996381d5bbae1edd *R/simulate.R
9ef5015f20fc1eabdbb3dfbd34d277b0 *R/stanmodels.R
29a0db6fb7abc6e98f20215ee7c2287f *R/summarise.R
809f456df997cde944ac92b4e23746fd *R/utilities.R
a0cae6bbc9c7b6c61f3cdb7b085ee444 *README.md
dab47179bcaa9a85a03a470a7220fe28 *data/covid_generation_times.rda
654618ef65f5fd529cf7ed6aea83d469 *data/covid_incubation_period.rda
ebffce243a666b5141bfed5aad2010ac *data/covid_serial_intervals.rda
b7d6e27c9b9b35367d6214b8b66a079b *data/example_confirmed.rda
2f77fb2a9a0d9bfbe84ff150ec8b29ad *inst/WORDLIST
855c064dbf8deaff96c8dc8a87169109 *inst/include/stan_meta_header.hpp
1a69e3b47f30b59fcf5cff9beeb58729 *inst/stan/estimate_infections.stan
c6e9f4b8baf58e811af6193703d14f75 *inst/stan/exp.stan
569c37c0db6ce40a203f7cceaa43337b *inst/stan/functions/approximate_gp_functions.stan
9e5a17446b055e5c7e050035834d4135 *inst/stan/functions/convolve.stan
c23178ff295d08670c6e01713e617fc2 *inst/stan/functions/discretised_gamma_pmf.stan
111598739c88672661f2de61d5246290 *inst/stan/functions/discretised_lognormal_pmf.stan
0db00a9333df0ac5a313f2bae6721a6a *inst/stan/gamma.stan
4a4e476cadf37a7da530161716941473 *inst/stan/include/license.stan
15a527b35c3387906eb6a9ef74783a72 *inst/stan/lnorm.stan
592a041185f7231f76ae888a6f6c1731 *inst/templates/_add-region-reports.Rmd
1924657b1130ad6fde74f13fdd655927 *inst/templates/_all-region-summary.Rmd
94577d9f6ca4b7dc93c3132c35e1c31a *inst/templates/_region-report.Rmd
12679c69feb3319ae670764034942fee *inst/templates/_regional-summary.Rmd
fc183534084b72b6eed0ac70ffa6be2f *man/R_to_growth.Rd
d9d7a04472347c1a638f7304d088437b *man/adjust_infection_to_report.Rd
c8b6d0db42e100b7703bc7a24e73a97c *man/bootstrapped_dist_fit.Rd
f619a3d36089dac38b3a2a9ef67421a9 *man/clean_nowcasts.Rd
c79ab9f9544ece9996ea4984b4975c8c *man/country_map.Rd
3bf50e1ddeed4f22a90aa05eed913175 *man/covid_generation_times.Rd
040139c2a75c87042f1734cb1dcc309f *man/covid_incubation_period.Rd
093c4eeae35f3d2dbfdce8835837b462 *man/covid_serial_intervals.Rd
d08ac75865a1fa4f661a609ea13f4df6 *man/dist_fit.Rd
55af2512da5110abfdd031121213b049 *man/dist_skel.Rd
0bed375de65b595ea8febb9d619b0c39 *man/epinow.Rd
a923844c39c338024a5ad5134d8ae53b *man/estimate_infections.Rd
4bfc7431a017d66d91ad5dd21158ef7e *man/example_confirmed.Rd
f10f5b66624d247f522d319a79af7e11 *man/figures/unnamed-chunk-11-1.png
ca420d1739029ede09a73d3e00274a85 *man/figures/unnamed-chunk-12-1.png
bda0b19bc96ab29bac455fbd64627af4 *man/figures/unnamed-chunk-15-1.png
318baa6d19f0474858ce9724df40df2b *man/figures/unnamed-chunk-16-1.png
c5c5db762eb090354ddc6a9a18e88c0d *man/forecast_infections.Rd
c12bd14c9e928c9d36613d387d4f692c *man/gamma_dist_def.Rd
254d72e6904c5b2034ea49492d2a482f *man/get_raw_result.Rd
30c073e4040a8d84f0a90ac0882f1537 *man/get_regional_results.Rd
22f3645cae20611375b991f3f580e477 *man/get_regions.Rd
5ae70fa8f3cfb032b570bd4eec4332a9 *man/global_map.Rd
79e01e2d54f5646465fe7d96db9bc4d7 *man/growth_to_R.Rd
6878ccc183c693d044540ca2f614a331 *man/lognorm_dist_def.Rd
8f42b6958265a93e716b3d3a52a2aa28 *man/make_conf.Rd
40146fc23d890be69f6df9478ee5b27a *man/map_prob_change.Rd
fa83be2fbdd62949402db182dbdede10 *man/plot_estimates.Rd
8d3fa0f82623201780d090e2535b44eb *man/plot_summary.Rd
a54160bfc468d2689b73e182865b0bf9 *man/regional_epinow.Rd
7d50e834ca5d697a7a5f4297cea0b205 *man/regional_summary.Rd
f92065051d405ef947e307db108cc51f *man/report_cases.Rd
01909d692b91b95466c98eddb6e511a4 *man/report_plots.Rd
8cd0073a1b72ea629c2c66f481af6fc4 *man/report_summary.Rd
b1919c21fe3c152c44d32fbcc87aa55d *man/sample_approx_dist.Rd
1e0a32a04ed3e497fb7bcbe4b706a222 *man/simulate_cases.Rd
0415516f847203430bab9577bd5e8b76 *man/summarise_key_measures.Rd
43cb62876b85a97655be820ea11cc6db *man/summarise_results.Rd
aa032eb9b27081fbb78b63ebcc149171 *man/theme_map.Rd
ec1f7adc46f14d6b1c5481244554415e *src/Makevars
cebeb8bdd5adb558f381741990eb1085 *src/Makevars.win
444edba493d15007f601412bb8e3a44b *src/RcppExports.cpp
0baa6f69735ee186e27e556a4737a72e *src/stanExports_estimate_infections.cc
eefc45916c0b07319e71f478424faac2 *src/stanExports_estimate_infections.h
fcdc275e01dfdea9f7ed4e9bafe6e780 *src/stanExports_exp.cc
b5844f96ca644bfb9b0d2be26a6c4d8e *src/stanExports_exp.h
e827f0d0f45e87fe6e35a8dab42fa749 *src/stanExports_gamma.cc
684e0ba22b01e3a45c8d73224fe84034 *src/stanExports_gamma.h
efd0614f139864691a73bec46f10e740 *src/stanExports_lnorm.cc
801e54c83ca3425000918a3b56960926 *src/stanExports_lnorm.h
0622a97a2aaa3c342f09636052c2d7f5 *tests/spelling.R
