69fb1e5ed020cfd92d8c4177aa11b9ce *DESCRIPTION
9933de5bb9f0f94b542e56f6c29dd541 *LICENSE
ddb7d57a0a7416c26f0277880fde9c0a *NAMESPACE
426db623ddfa5a12173cba8767b38ea0 *NEWS.md
2575ecd2ad368753fbaec82da043ad01 *R/assessModelQuality.R
d57c869fd6606ab4c76f8f7421dd332d *R/assessModelStability.R
fd4c2fa078261d85cd10723a4731bdf8 *R/calculateFMS.R
77fc247b27b3de983d305b0ebf90bbb9 *R/calculateSparsity.R
93dc672b57a5362c00cc9b29326d3bc7 *R/calculateVarExp.R
eb97030cccf1fd28629c22058f624384 *R/corcondia.R
cf876fb8fad21a964e0cb295f18db16c *R/data.R
9aed96f43c9f80bcfe85fe5f1bc53f2e *R/importMicrobiotaProcess.R
5c7f86cd515d1944906eaac7c1ed1018 *R/importPhyloseq.R
5804f77cbc49ba3b7be111b416b6266c *R/importTreeSummarizedExperiment.R
76ccb4a8ae959824ae2ad6434bd1fba0 *R/initializePARAFAC.R
bbd26517016faf159133ff0c54d67414 *R/multiwayCLR.R
856f44cbcbb0aefaa6628c9b6582c395 *R/multiwayCenter.R
33599a5d99528f0b6305e4558164a697 *R/multiwayScale.R
eb82ef4e063657bb51e53c780893cab8 *R/parafac.R
e043777e46a94d011dbf42c74c1ce252 *R/parafac4microbiome-package.R
257df2a7f0005b280bd1e4f050caebbd *R/parafac_core_als.R
296b531814f5880a52dca33e7c701a86 *R/parafac_fun.R
cf280ef1ea31d2bb4cb031eedf9bf470 *R/parafac_gradient.R
f9dc38431543bd2c8664fae2f246d7d1 *R/plotModelMetric.R
c18a6925de9d82ce6ff73b1e45ce6c40 *R/plotModelStability.R
74181128a6befb6c5f64bf4fb1dceda5 *R/plotModelTCCs.R
4c310212c8e945c2c52631329224184e *R/plotPARAFACmodel.R
569e2511b6daff423ddd4e45b558e8aa *R/processDataCube.R
562501787dbdfccc6c5aeee199a4b267 *R/transformPARAFACloadings.R
cf794928715019cf81bd51d467156178 *R/utils-pipe.R
b601deb2f47f42605b5718b7e187e095 *R/utils.R
13a0a284a33641d35e829833ace6d934 *README.md
b54db8794555342c4feee5fe0b1b8f5b *build/partial.rdb
c92be66f92c454c3e463b7520dd19544 *build/vignette.rds
b6a35f575db7eb930ed3b222d19a959e *data/Fujita2023.rda
4c34e6ca261287f406ec83c163af0f71 *data/Shao2019.rda
1e28c415d47906f23e13fe8c6dc32cc3 *data/vanderPloeg2024.rda
a3dde39dfc267cf6a3a5a8aa2d5d0423 *inst/doc/Fujita2023_analysis.R
4ab65887ff5be7af6ee8e6a92eda5a60 *inst/doc/Fujita2023_analysis.Rmd
a53451293e2e61fffbbf11fcdc60df0d *inst/doc/Fujita2023_analysis.html
ee275242f673788bb1d54d70189418ea *inst/doc/PARAFAC_introduction.R
f0c086d203756064356d4195c2e860b6 *inst/doc/PARAFAC_introduction.Rmd
8a297fa032812b10bc0bf4e472d90f16 *inst/doc/PARAFAC_introduction.html
ca3a308e5f1d10aa731170e89809eeda *inst/doc/Shao2019_analysis.R
08ccd73716099b83b9d4799e20bb966a *inst/doc/Shao2019_analysis.Rmd
a70f3f3192c4af35a2afaec3089b71b8 *inst/doc/Shao2019_analysis.html
cc9a0a10bb9cf0d2a4e5ff6943e490f2 *inst/doc/vanderPloeg2024_analysis.R
ac213bbaf8a26bf7d4176de37f472e81 *inst/doc/vanderPloeg2024_analysis.Rmd
dc739c34cad17bfc0e57117dfe1bd49e *inst/doc/vanderPloeg2024_analysis.html
6b13a8b636829677001fbd97f71c2dc8 *man/Fujita2023.Rd
4cddf8d669cb9da2288ba75aa2bdfa5a *man/Shao2019.Rd
ba4a7d71232c68cf22b30381c2fdb117 *man/assessModelQuality.Rd
dc54bb7c1a67f7f9a7814d010c2ee2a8 *man/assessModelStability.Rd
b2a68b89ef6adc57cac8051798527c9d *man/calcVarExpPerComponent.Rd
cc823f79842f7e47b39e4a9c9359bd1b *man/calculateFMS.Rd
cd2ce7d427e6c6197bcd3631c12736bc *man/calculateSparsity.Rd
690bc90e933bf235c1963da33aa0dd06 *man/calculateVarExp.Rd
e2743556a4819744a74f7aa052eadb0e *man/corcondia.Rd
100dd2dfc4e7ccf83ff62e3729e6ba26 *man/fac_to_vect.Rd
f29864b16a04ba69366c913c7897efd9 *man/figures/README-usage-1.png
8b9317939d546a8bd0ae4da30c658f78 *man/figures/lifecycle-deprecated.svg
e1c8d33150e179ed17231c575895092b *man/figures/lifecycle-experimental.svg
383d1a195cfb97ae7af9a37a877b88eb *man/figures/lifecycle-stable.svg
6920593141a53e9e05a9d7c6fd393650 *man/figures/lifecycle-superseded.svg
e28a4110071911d9c6335d2be8fdd0c7 *man/figures/logo.png
bc5db79143ac783766415d49222b6806 *man/figures/logo_backup.png
c54e806ce83cc230b1fb2e2654186edd *man/flipLoadings.Rd
f6a08172c6391f3954339308ea769d53 *man/importMicrobiotaProcess.Rd
3e527cd79974d6f65fd622c0cd38c19e *man/importPhyloseq.Rd
e31faf8f3fa0b224140fda6ed982e898 *man/importTreeSummarizedExperiment.Rd
02b3a28aa38a9ab9c3a974ac817d4d59 *man/initializePARAFAC.Rd
94b7513370270d96a6ff9531315d253f *man/multiwayCLR.Rd
edb54c9ab498505946bff035eb4a6af3 *man/multiwayCenter.Rd
6f07868ff2236186eb3a54fd10135e92 *man/multiwayScale.Rd
83000174b5f91f3f7f233ec57cb18dd5 *man/parafac.Rd
77f3b66cab487f1ba78dfad6d9002bf4 *man/parafac4microbiome-package.Rd
3c9159f9993e1b47d45b74f9a39d4704 *man/parafac_core_als.Rd
ec90b58f58bfa37a052b71f9e9bc2ca7 *man/parafac_fun.Rd
1dc0416c2c215da8a8bce43a4d716972 *man/parafac_gradient.Rd
29ee7383caa7fc8c14f52bd035509064 *man/pipe.Rd
dbb0da5d428b2e827b2fcf58f0eea7fd *man/plotModelMetric.Rd
d3b7f5fe3596d538974d199c20643f6e *man/plotModelStability.Rd
4e0742ec51eea743299ea88435c72c0d *man/plotModelTCCs.Rd
370b598152ba82f3769574b6c897109d *man/plotPARAFACmodel.Rd
12f62a7a13779154f748d9b78f0e3eb1 *man/processDataCube.Rd
b8751bde37fdee5cdfbbdf2a18e84ef0 *man/reinflateFac.Rd
0f00e08bd6077ddd11bd9bea5aba91c4 *man/reinflateTensor.Rd
8e0c4697b7223cd7931d0afbc857755a *man/sortComponents.Rd
971ecb2f205a742b3cc9b9af71a087af *man/transformPARAFACloadings.Rd
90f6680116072433bfb12af4324de199 *man/vanderPloeg2024.Rd
0744b3a40d1cf54912ab7579d4ad1569 *man/vect_to_fac.Rd
eab76a30383249009cc5ec9c50f36157 *tests/testthat.R
16e84b86640602d19cd29fea2cf567a2 *tests/testthat/test-assessModelQuality.R
049366412604cb054490cacccbac4833 *tests/testthat/test-assessModelStability.R
43759bc7b5cc6a5496083d397168665d *tests/testthat/test-calculateFMS.R
4a514292cae0b08e25a9550cff104b03 *tests/testthat/test-calculateSparsity.R
7ce9452b3d7a3066f69134690220f6f0 *tests/testthat/test-calculateVarExp.R
5ac5ff9a0014c2814d2a892a86e1b876 *tests/testthat/test-corcondia.R
4b06d4d7b911888dfb7a232b64d2672c *tests/testthat/test-importMicrobiotaProcess.R
70f6fb773f915be8a84bca599fb80f96 *tests/testthat/test-importPhyloseq.R
f4b2edd2a51416dc8304aca390c3a130 *tests/testthat/test-importTreeSummarizedExperiment.R
4a932b616ca367a9e249f227d37e25a8 *tests/testthat/test-initializePARAFAC.R
77c33f4f9ac80c981645ca5e3652765c *tests/testthat/test-multiwayCLR.R
08a6de12f8aef15f0c8c3b30d522b0de *tests/testthat/test-multiwayCenter.R
93c49c8ba828903010e0b358e2ae346f *tests/testthat/test-multiwayScale.R
f35ec659c04704c26b4d2112ff7f55b1 *tests/testthat/test-parafac.R
69008a25ed6b8668727ef22e45393a72 *tests/testthat/test-parafac_core_als.R
15f58795615ced23de9ffd189ead21b8 *tests/testthat/test-parafac_fun.R
67b50c4b4f002078e1fdcf33334d0b70 *tests/testthat/test-parafac_gradient.R
f7b3cce40bff926535d56aaa5c088d18 *tests/testthat/test-plotModelMetric.R
14698bf27e10670779d5360199a241ae *tests/testthat/test-plotModelStability.R
9c1f432c76c32b748e01dd968e652485 *tests/testthat/test-plotModelTCCs.R
3014da56e6bed1b57f556ba5c60a62b5 *tests/testthat/test-plotPARAFACmodel.R
225e3812b897786befc574f805c96dc2 *tests/testthat/test-processDataCube.R
ee6123d29e0e375288e969e079d69dd0 *tests/testthat/test-transformPARAFACloadings.R
cedcd35bd7a5ea4135433c4eba104b11 *tests/testthat/test-utils.R
4ab65887ff5be7af6ee8e6a92eda5a60 *vignettes/Fujita2023_analysis.Rmd
f0c086d203756064356d4195c2e860b6 *vignettes/PARAFAC_introduction.Rmd
08ccd73716099b83b9d4799e20bb966a *vignettes/Shao2019_analysis.Rmd
ac213bbaf8a26bf7d4176de37f472e81 *vignettes/vanderPloeg2024_analysis.Rmd
