ded818193842492e77e69f2ef33e6d72 *DESCRIPTION
1abfec1a5f07444f50ba2fdb588bc305 *NAMESPACE
a8824483f943d2629d8732ffe087f23e *NEWS.md
a2069ca984e529163885189f9ee30102 *R/add_predictors.R
2452728103ed33072fbef82b41d92d98 *R/align_ids.R
03214fbd62b46a76073fa72fd8dde04a *R/big_cbind.R
d56955fd17353d94f3c1146c4ae01e4a *R/coef-cv-plmm.R
da3f9b8c40e313f998abf9ad69e988e4 *R/coef-plmm.R
aa4ff560f682a2d54324fb98818df1a2 *R/compute_blup.R
f9c0eb08c660165007fe38d534042f63 *R/construct_variance.R
eaa103a86d43e2d8793ce83a53288568 *R/count_constant_features.R
5fefe8eda24e07d5f8f3e0b42a90f537 *R/count_cores.R
5e2b37b585d64540e23d8ec626bc878e *R/create_design.R
119851ae0bc457716b4d3036a647d726 *R/create_design_filebacked.R
c0638fcb2f13483b95b6380da6feda25 *R/create_design_in_memory.R
411450a4b16698a0d3acf89eccf18b98 *R/create_log.R
fcd5fc408658ade2d6dcb112af631e9c *R/cv-plmm.R
1c2bc4417ec4317826d6ebacf03c0935 *R/cvf.R
b3a4d504e026325377265b6eed30b80c *R/data.R
50de2c411b784c7ffb426ff06ae737eb *R/eigen_K.R
37c463ee8a7c79d7037042c09dc1ae73 *R/estimate_eta.R
9e3f1b218530591c11e58b76d07e85dd *R/find_example_data.R
e72503f3e09f029e45248c555a77c28e *R/get_data.R
6348ddaf820a3756ce3e39a815b0e97b *R/impute_snp_data.R
e13196dfd99397c3e76870c045e9716a *R/index_samples.R
c112380bfdc12075fb704e802b5f4bd5 *R/lam_names.R
a76f00443d671e4f85cf838728b34f3d *R/log_lik.R
b9a0690278e96eeaa5015d7b7efadca8 *R/loss-plmm.R
447306c0f70eff87eab9f6faebf9b19a *R/name_and_count_bigsnp.R
fce6e174cf61e0629f4e4aa15952c705 *R/plmm.R
f52c544c1f2b400440aaaa87d00ae661 *R/plmm_checks.R
272fa6dc882ad089f4c7e43e86066241 *R/plmm_fit.R
21c33eb7662953a5f3b07495894d4c43 *R/plmm_format.R
2b1d16d8e8e244ef574d9b792658273c *R/plmm_prep.R
be1f166a3b0aee0f11124e684596e98c *R/plmmr-package.R
566945cc600575c13f3c33ebe373c1f6 *R/plot-cv-plmm.R
8f4e288982b69d9b8f889867c4b9efa3 *R/plot-plmm.R
e76103d7a91db889040aa45b4fd62346 *R/predict-cv-plmm.R
aa25b3267df54c26401bb825f1cabc2f *R/predict-plmm.R
61deaf93916c1d5f42f494bc8cb42680 *R/predict_within_cv.R
749869b0fd031f5ee5ba02dcdf609613 *R/pretty_time.R
d007a31787b686aec0d155f1ab87fa14 *R/print-summary-cv-plmm.R
ade3a8752d257d33294b06b1bffbf403 *R/print-summary-plmm.R
eed6185fd4d6e46d2fc4365739be0e2e *R/process_delim.R
0d4ef1d5096805414f16e5cd3c7869d4 *R/process_plink.R
f33e844ff103dc6855f0f4ebf817a17f *R/read_data_files.R
917b0e24c685adba98e2fe17e6b46c96 *R/read_plink_files.R
39032ef008d4020f10e20e15928a1d0a *R/relatedness_mat.R
efe3e429d6650f5d784412f0c6058498 *R/rotate_filebacked.R
85e5a8f19f3bc2d32ed7f232a8da02e4 *R/setup_lambda.R
c33d96a82464db55a467946c8ca36a81 *R/standardize_filebacked.R
6e077871a61ba4764d6533f250795852 *R/standardize_in_memory.R
fa47167da035a882a3ea652306335d57 *R/subset_filebacked.R
23152fde5887a6cf5c2f4631e78505a0 *R/summary-cv-plmm.R
7ef93a09db4cc578ee8da8776eaec211 *R/summary-plmm.R
0036c91acf799ce4f1c1df428477ae66 *R/untransform.R
a03a3b96b065f900b2fcf3f0b9b4225d *R/untransform_delim.R
c5222ebb808ac38984d3b0e5e7b48e11 *R/untransform_in_memory.R
ab7c39b164fe56e16fce10329e872951 *R/untransform_plink.R
63bdac50211569c2b8622bf4d48f50e0 *R/zzz.R
c4205450c9589bef97593a735cb0de19 *README.md
533839446f70bde34a1050627ce80586 *build/partial.rdb
340839462848b52c8b8fdb6076080b0f *build/vignette.rds
7121accff35c31ff88eee089bbfd72a7 *data/admix.rda
a16817adae99e64e84b3ddb76b857963 *inst/CITATION
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e758be36642c7c918a0dcb9dbb7d7725 *man/admix.Rd
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7464402245e5840166f5cd26d8a226af *man/big_cbind.Rd
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680a899465fc95854f13b6d484b92226 *man/count_constant_features.Rd
385b3d0f487b80dc16f9717993c6ad40 *man/count_cores.Rd
42bd568e108e17bd143e3382ed1093d5 *man/create_design.Rd
66bb6e9f9f20422d24e16cddc791b718 *man/create_design_filebacked.Rd
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2ddd653fd6dca117b346d438d6d0165a *man/create_log.Rd
93d26ee68dfdfbee34d637e895f59e81 *man/cv_plmm.Rd
d53e9062cdc35954b5532baebbde8a4f *man/cvf.Rd
cfc2f61d33ce0afb53e63e730ad3443c *man/eigen_K.Rd
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cdc4aad8b6e2ec629ee59faf65f68628 *man/figures/plmmr_hex_sticker.png
585aedd00673689a3eac8c8c4d4c717a *man/find_example_data.Rd
2673f9fc6780f1ed9715f6b79c696f9b *man/get_data.Rd
3aad5ba7d7db3571d103aabbc05e325a *man/impute_snp_data.Rd
532b45e98e30e3497081b303a1403b4b *man/index_samples.Rd
c1cbc20d112e818ddc166f7721c06a74 *man/lam_names.Rd
a49a938ec912e515d1ba877d1ea811c9 *man/log_lik.Rd
d8d13ab050b7be07ad6bf5596147a6a5 *man/name_and_count_bigsnp.Rd
e1e7024e9d486fd9e93e9a906134e0c7 *man/plmm.Rd
738d0ba5bf7122780bda0ad240957d6f *man/plmm_checks.Rd
79c58a8543618383a6e4de750aef2a13 *man/plmm_fit.Rd
9a80ba059500208439e7e53b068e1a62 *man/plmm_format.Rd
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88ef6f3565825df17ee8f9ab9941d8e2 *man/plmm_prep.Rd
c6f1e4b86300a4dd8dc2d4ac9d160fa7 *man/plmmr-package.Rd
7fede67432a0f3d55298f3cc975c0050 *man/plot.cv_plmm.Rd
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5209ff8426616b6a1c6e7bc9f50a8032 *man/predict.cv_plmm.Rd
4073412359f4b9b1d523dd254d66da57 *man/predict.plmm.Rd
37002a9487f5521b1b32c2871010fc15 *man/predict_within_cv.Rd
17873a288c38c517dd9e7a080e88bf4a *man/pretty_time.Rd
fcecc2c762bccf244382c76c70a444f8 *man/print.summary.cv_plmm.Rd
98814146168ff2b70792f076e6afb201 *man/print.summary.plmm.Rd
be9bf4ef3ef6683acb46f53898ce15ac *man/process_delim.Rd
15d44f9ad2c719dd8646599b977a2560 *man/process_plink.Rd
4ba19da830be8b51c603d4d2d62d4f26 *man/read_data_files.Rd
c1561bcdae3d2246a850059702ed420a *man/read_plink_files.Rd
2e97733c10690d1c4c44902bade7ef13 *man/relatedness_mat.Rd
3d2cc8831cf621fa595904f42e1f67a4 *man/rotate_filebacked.Rd
317ab63ae90a1b1a69d3644023296246 *man/setup_lambda.Rd
e20f02fd6455b7d4ad5569b4aa0b26fb *man/standardize_filebacked.Rd
dd3872d20427c4b5d789a480adcd009a *man/standardize_in_memory.Rd
7c1504956c58d72817076a1c02353697 *man/subset_filebacked.Rd
8f7372189742d5b2df49b616885bfc75 *man/summary.cv_plmm.Rd
04a57c3a13ffba862045f5670dcfbd3e *man/summary.plmm.Rd
02bc3eb094d6e16284fedb999b86c66d *man/untransform.Rd
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8bd91eb8af1350feaa3f620b8d312c03 *man/untransform_in_memory.Rd
f8ead2e1e163356eb5074fe64d0c425b *man/untransform_plink.Rd
bd880347a1ddf91d28133ad876c281cb *man/unzip_example_data.Rd
b133fd70ba101b2d946e653a48541482 *src/Makevars
7d63cfb73145573685f48855ec3a1356 *src/big_crossprod.cpp
3f3fb14167f4be94353964cc947a6de6 *src/big_sd.cpp
f41b14eba4a2c6ec4ea41be90eaead09 *src/big_standardize.cpp
11638bd377b58fa7af6b598db23113dc *src/defines.h
4427b8167d6c6d6c525b984c69ce1680 *src/plmm_init.c
f624a54f02444e5696d24e6b3c16554b *src/plmmr_omp.h
826ab7689496cca80932282b5942a3ff *src/standardize.cpp
ecb7b4f7ff9ba5a6c38510a99cb985bb *src/utilities.cpp
43153c0306acba4a9f2dbdce41971166 *src/utilities.h
e0e76ef36e5c58e44b726015641bd0ea *tests/test.R
93d5c7fbf96d2edbc8f7445544744623 *vignettes/getting-started.Rmd
