7ecbcf21ab538bcfeba8a81262649df6 *DESCRIPTION
3f844d097a257470b1861afd31cd61fb *LICENSE
eeec704722ad2d6e1a0e1e93c03edb15 *NAMESPACE
1e1507bd8bc57c4981a7115109e5f960 *NEWS.md
bb309d7cebfd1f6407e549caff4e7ed2 *R/Celltype_Annotation.R
6fa49c3ac85626e8ff78b841d986e782 *R/Celltype_Annotation_Combined.R
88a01776f8255c8a7394166f46a8cf1f *R/Celltype_Annotation_Features.R
af73f2b963033439735d53815757f699 *R/Celltype_Annotation_Heatmap.R
5f0f50e37166f0dd6565c2f76e03b72c *R/Celltype_Annotation_PerCell.R
df79d69b359899f34d85ebcfbb8d1384 *R/Celltype_Calculate.R
421a7580a194bcae729abfb8bd7c2dc3 *R/Celltype_Calculate_PerCell.R
9a279032eda0da3410cf36309a21780e *R/Celltype_Compare.R
a469184f07bf8a9e8a932f7e2425c938 *R/Celltype_Verification.R
70818b083878d4ea005185c2ab541c36 *R/Celltype_Verification_PerCell.R
c29689de0749719e0689b0e1cfa32899 *R/Celltype_annotation_Cellmarker2.R
971bdeef1d6cbaeac9b331c4b00e42ed *R/Celltype_annotation_Excel.R
2b9798de1c4da4b93011ce3b494e35e7 *R/Celltype_annotation_PanglaoDB.R
32d34f1377c207de47129678b16c9f12 *R/Celltype_annotation_Seurat.R
47719c23254d2c726a3b924758f6bff6 *R/Compute_Gene_AUC_ROC.R
54875c1dfea1e270f58cd5c0b22faa42 *R/Database_CellTypist.R
4a2bd3485d6027bb88b0e73580a99832 *R/Database_Cellmarker2.R
fbfe6dd83eca07337a41d34542ee4f85 *R/Database_Cellmarker2_raw.R
640c41d5fa88e10bcb618d9a842be952 *R/Database_Cellmarker2_table.R
530f08275d578f2755218e52451d4c14 *R/Database_Markers_list_PCTAM.R
ebef057f7b275790b4d8b43ba0d11192 *R/Database_Markers_list_PCTIT.R
a0f6a5fee94574560bec83b1a722cd8d *R/Database_Markers_list_TCellSI.R
f6e7a41fd65bcd0d66ea768119b94141 *R/Database_Markers_list_scIBD.R
e584390bde1401bdd8bd90bdd9d37dbf *R/Database_PanglaoDB.R
85d7005a77111abda43a43a9ff2a1a25 *R/Database_PanglaoDB_raw.R
421bec9dcaf9fd0f5077dd3ce1c878a3 *R/Database_PanglaoDB_table.R
3d94824691a8c57428a6154fa726dd95 *R/Database_ScType.R
b4748de3fd8023c7018590d2fed2309f *R/Expression_calculate.R
29d2f7cf18a7bef50343e08d25675e01 *R/Markers_filter_Cellmarker2.R
98118fab79689ff68869b78fdf87540c *R/Markers_filter_PanglaoDB.R
a9f9c858d1d3986410982bab28094daa *R/Markers_filter_ScType.R
cd263314d4730bc80c16053735f63093 *R/PerCell_Workflow_Example.R
c217ae2c5639a5586d884e4be27866f1 *R/Plot_Hierarchy_Proportion.R
6b4966f9b9cc3df1e51cfff9898f51f1 *R/Plot_Voronoi_Diagram.R
b20f05aa45278cab4a5ce2d9a216a727 *R/Plot_pheatmap.R
d6f2a79548fcc8a0090c2cfd9ebeafa0 *R/Probability_calculate.R
b367d874291b6a635ac30d8eb61a5ca3 *R/Probability_parameter.R
50ce13dd7b246f7d1d515b7b164fbe46 *R/Read_excel_markers.R
07ac2041a7fb729511ee046032a38f9d *R/Read_seurat_markers.R
700c2914d40853aac685c651dd6a6075 *R/globals.R
9902cd98b3618307e43b9e6efa771616 *R/onattach.R
233bec8a3c18119099a5c51db64e8cc5 *R/paletteDiscrete.R
7ff24d9e9330ef2d0bb26cada35c14cd *README.md
24bc7c3f5a645905c53152bd3d0b8f61 *build/partial.rdb
8693e98aa80f66ccaa8b8f6c4f462e4d *data/CellTypist.rda
b8994e3ff532d7b66143a255ca7b8e8e *data/Cellmarker2.rda
a0c419857f8c97d4cadbb51e3292c0b5 *data/Cellmarker2_raw.rda
e68b7b464c83ab446e36d67877bc3bbe *data/Cellmarker2_table.rda
4866b1dd9bf983d008d839ec31fc7ea2 *data/Markers_list_PCTAM.rda
77602adb3067350893e5cf374fe939cd *data/Markers_list_PCTIT.rda
ae68fab70fba3f9335f5e8fd226e33d8 *data/Markers_list_TCellSI.rda
3d6d2bc6c6afa4fe78497613f105bde3 *data/Markers_list_scIBD.rda
941dd2389f9b832130222014c6a2fc17 *data/PanglaoDB.rda
583d86278649c7fd086494928a05301c *data/PanglaoDB_raw.rda
397659e2c819352ee9c4444f9e765b47 *data/PanglaoDB_table.rda
f3a888e600d7e4f6395bcbb5a598a628 *data/ScType.rda
64f02180c9debe8c6d15cbd22fa94ebf *data/ScType_raw.rda
c5f87067dff05872413d81ab0807e069 *data/ScType_table.rda
69cd3ad1c83c2ad58032c0cac1c88338 *man/ArchRPalettes.Rd
9d8eba51c496c78db5e80d77a240edd2 *man/CellTypist.Rd
6c604cfd9b88ab63307d6a21578c5247 *man/Cellmarker2.Rd
35bbaca5032c8e163d6c5d733e7ebd49 *man/Cellmarker2_raw.Rd
ca91e306efc1e52ba77d89d627be2478 *man/Cellmarker2_table.Rd
c214fed969e358057333aea342753288 *man/Celltype_Annotation.Rd
0a2be3768e3c71cb5172d3c69d99dd47 *man/Celltype_Annotation_Combined.Rd
91c09b486eaa66e80824caa98958f5fd *man/Celltype_Annotation_Features.Rd
c2921f6a976308da97316f74e063ad0b *man/Celltype_Annotation_Heatmap.Rd
63eb9208d05fc9ddcc7ef9b9b432ed0c *man/Celltype_Annotation_PerCell.Rd
dde538387038bf57bb3ede5dc48487fa *man/Celltype_Calculate.Rd
d39556429870b0c8775b01d1cf7123d0 *man/Celltype_Calculate_PerCell.Rd
f6b170fb2388cb17ecccf57fc11ea81f *man/Celltype_Compare.Rd
23c8d40e2a868158c2ec610e74a91d54 *man/Celltype_Verification.Rd
9de3dbd7d95a1e14c272d15dfa7391d7 *man/Celltype_Verification_PerCell.Rd
80b4920e814fd4f601e40537de9344a7 *man/Celltype_annotation_Cellmarker2.Rd
e4c01e3925dec9cd380941292ffbbcc9 *man/Celltype_annotation_Excel.Rd
ed1b1aa341331eff6d824e62764e6531 *man/Celltype_annotation_PanglaoDB.Rd
9e2f29fabcf10228a1861b6d260e91fa *man/Celltype_annotation_Seurat.Rd
cceb0e0e1ddafbcb360a6b84e71b767b *man/Compute_Gene_AUC_ROC.Rd
7ed3d6e20ab87803c9b2a18388aa698e *man/Markers_filter_Cellmarker2.Rd
0fc1d94ddcc627f6815f5f91137030c4 *man/Markers_filter_PanglaoDB.Rd
882f41c198f2d9ed4a3b967df6586de7 *man/Markers_filter_ScType.Rd
cb47e5ff73446c6b5fe8c03c48cc6cd0 *man/Markers_list_PCTAM.Rd
90c8dee2328050ef6d1cbd3cf6c19ab8 *man/Markers_list_PCTIT.Rd
74eba5cac1cbe58e45804e112278d94d *man/Markers_list_TCellSI.Rd
e7956c7b328c080cdd5bafae56ae2b5b *man/Markers_list_scIBD.Rd
ddc8db0c40b56b7b35325f3b0eedc5e7 *man/PanglaoDB.Rd
c632f168096fab6b458fdad20a64bf0d *man/PanglaoDB_raw.Rd
bbb471a6ac5332f631bd9d7680b62940 *man/PanglaoDB_table.Rd
8fd81eaa32ced6f8ee97163b157a9bb8 *man/Parameter_Calculate.Rd
5aa2a721244bf18c70ee8b7a1103432c *man/Plot_Hierarchy_Proportion.Rd
f1736226f2518ccac79cb79e119dcc9b *man/Plot_Voronoi_diagram.Rd
72180d4ff6c168227ebe9e9b6d8e6775 *man/Read_excel_markers.Rd
fb3c8354764a4184b0584ca99cb00bd8 *man/Read_seurat_markers.Rd
6fd6d4a21f3c19101074c50de87a4615 *man/ScType.Rd
b7f98a0f8bd2baf710a7bbae21d44c54 *man/ScType_raw.Rd
6e8a0e159d60d0c81afe1481483e8bb3 *man/ScType_table.Rd
c18d5d58ceca562cd8bb40610cc36420 *man/calculate_cluster_variability.Rd
68e5f4f612d2f4323f7d37399a4a806b *man/calculate_expression.Rd
a793d762667d1b8a2d83cca68417a2fb *man/calculate_expression_skewness.Rd
c6525c1d2a7c9a934c2f1e997141d980 *man/calculate_probability.Rd
035e4f6fe190ab52f355a825bcbabff2 *man/compute_adaptive_parameters.Rd
ec830f4a503798ab139b51139ee75c1c *man/dot-apply_umap_smoothing.Rd
4e3204739e9ae323f87c5fb2f84630a5 *man/dot-compute_aucell_scores.Rd
d0656c312ed46fa8ac0f3015f31844e4 *man/dot-compute_weighted_scores.Rd
27d9c08b1c720d5d98950e539f1cb4f3 *man/estimate_batch_effect.Rd
6c791ef7c90103fc5bf00f769e4c7442 *man/extract_dataset_features.Rd
5139046bfc36048f9c19b26b0452a7a7 *man/paletteDiscrete.Rd
b610739ed0259173ac2adbd0251c48b9 *man/percell_workflow.Rd
b367e6541389bccebc4f768adfb53c86 *man/plot.pheatmap.Rd
56952a77a420047fa0997d92ac8a5e93 *tests/README.md
f9eac85bf1e555b82d85e1fca8aa08f3 *tests/testthat.R
4864eb50d211e17bbc93a25c964bdb31 *tests/testthat/Rplots.pdf
832d0429f88f1c23177b0a2fbb2b67be *tests/testthat/helper-test_data.R
2333b0e23c71c7dd9fc682e83a4903ab *tests/testthat/test-cluster-annotation.R
f3230eb5292612bbd9236815f76dc6c6 *tests/testthat/test-internal-functions.R
5505c621c9aa5a8a9a1e920a4ae5c5bc *tests/testthat/test-marker-functions.R
1c0ba43063a750c3e1a53bc18d9df2c7 *tests/testthat/test-percell-annotation.R
3ba8264e0d57b8f55b1a114407371cf1 *tests/testthat/test_percell_integration.R
