3ef2f9d4ff023c9be0a81d2eabfc1628 *DESCRIPTION
10974fe74f71757adb472bda00075d89 *NAMESPACE
267d9ee031ccae5c4466a50228b5eb85 *R/Hstats.R
b6acc7614a84abd17ae0c09c859f25fa *R/LDgenepop.R
2ad65cba01c3e14d60fd5e62d7b986bf *R/RcppExports.R
111c259be4d650ccfda8867594ab0954 *R/TiTvRatio.R
6028853d1bee67c8fce38a19a0c0f356 *R/alleleFreqFormat.R
a9f67d745615c2bf6321253c32ccc297 *R/alleleFreqs.R
2dd87890344cd6c83fc33c9d502967c0 *R/alleleSplit.R
cf902eb005c2f52243fb63d04488d0c2 *R/allelicRichness.R
bcabca7ed89a06a9fac9cb5453f65b9e *R/as.data.frame.gtypes.R
5f0a486498b6ea489983e2bbeffc950f *R/as.matrix.gtypes.R
0476bfff3bffcc34c4b1ab75d9820604 *R/as.multidna.R
a3770a80045c6fbf04187de9e01dbb73 *R/baseFreqs.R
3cbc27ba668e18affbe0e79f3ac40a19 *R/clumpp.R
8ee98e6211e37904e31a787ef776a28c *R/createConsensus.R
b0797f969fd1192391841fa93653f69a *R/df2gtypes.R
9c477351564a37106f7629d3808f97ae *R/dupGenotypes.R
5c841ae25b1f826bd0ddae4bd1720118 *R/evanno.R
c87e3ab2b4c278fae59750e0b2001178 *R/expectedNumAlleles.R
ba72cf2481432426470a36513f413ea1 *R/fasta.R
49c8fee02e2a322cf2500ffdfed4d3fd *R/fastsimcoal.R
30432b40d41fbfec7514ae5745a5f7cd *R/fastsimcoal.input.R
045ff123d06006b03fc73b01cb129482 *R/fixedDifferences.R
8b5ac96fa48b53cc4fddc670299465f4 *R/fixedSites.R
5062e644c07c87234d8e1f5a27b27be6 *R/freq2GenData.R
2ed250014c7de56e92ef32cc9d334ab4 *R/fstToNm.R
f7b474aa539c681cd32ae64420d4f6ce *R/fusFs.R
b39fa652d99766e240f3910389aa440e *R/gelato.R
abeeffe1f9b7a8301a03f9008cd5a007 *R/genepop.R
be0de9a7fe89b0f3471746a50540b110 *R/gtypes.accessors.R
34797dbf2be89ec85e134d051dd76bca *R/gtypes.class.R
5623ecf812707df3b9a84c2ca64a72a0 *R/gtypes2genind.R
ade214100f0519f490f38a9b8ba64106 *R/gtypes2loci.R
ae7f2d82adde5936f603c79bb2a0e719 *R/gtypes2phyDat.R
907a18c8c2cda19ab6e8f92febb211f9 *R/haplotypeLikelihoods.R
06f87112ea25ab27967e5e534f738d44 *R/heterozygosity.R
c75aab6842c48dc79ec350fe2d92933f *R/hweTest.R
d88d634c7a223ec32ec89ba34e0790ed *R/idRows.R
97d0b621f86edd801e871b6689eb3eb4 *R/initialize.gtypes.R
0a1b09f6aec22d0f3d0478a4a310313c *R/is.gtypes.R
f781fcfb1a636399150490bb1de77148 *R/iupacCode.R
1eb309dd4064571b8a570abf412c5dc5 *R/jackHWE.R
d9ad3538a838ac8c78b6365812cf9970 *R/labelHaplotypes.R
18990727396437e6bc84fdb26461be19 *R/lowFreqSubs.R
110a06609f97c39c4f314b936073f0c9 *R/mRatio.R
e3283710dd714321fe0f4de55e44ff7b *R/mafft.R
a0c7c8cee6c886afb1c4a8e6f80a01e7 *R/mega.R
f5eeefbd9bcc1bbbd9cc42d45633cf8d *R/mostDistantSequences.R
a59ce6f57225523668ad8fd00a50232d *R/mostRepresentativeSequences.R
313512b526c44c29a6fd020691f94a9c *R/neiDa.R
a870fbd4a11aee060f843376d16d9af7 *R/nucleotideDivergence.R
35098d04ad074cc1c9e44f4a7f890d6e *R/nucleotideDiversity.R
5e90faeef3994322205f082a3151b191 *R/numAlleles.R
4931b3d76351895a7a16ba038875aeee *R/numGensEq.R
6912a837d4228f89bfc9569a5e0b8638 *R/numMissing.R
76eb3d53bdf8264f1c71c7836d4afcfc *R/permuteStrata.R
192230352bcd5704857f28877c417477 *R/phase.R
e3af56221db043264f1c49edd4ad95e3 *R/popStructStat.R
9d48bb721ae79ba346e81afc630b7001 *R/popStructTest.R
403aebc072ef1040b4bf80e5b658a7bc *R/privateAlleles.R
95efad11e613ec1270504d83c99d2f98 *R/propUniqueAlleles.R
788c637da0f9aba88d9bf1a3079ac29c *R/qaqc.R
bc943a59130ddc801cac5921e42b466d *R/readGenData.R
d98438bc112df723c6c764e5f23ee80e *R/removeSequences.R
d5584b6038037a5df6558b6c87a312b1 *R/sequence2gtypes.R
5d520d089fd5c1be34630040f1592616 *R/sharedLoci.R
88851ec1167f5084ac8241a732be98c0 *R/show.gtypes.R
726dcb4bffbb985eaf3ea7243d591bd9 *R/simGammaHaps.R
c37809e26569ad4b14e7be5cbab1a5fb *R/statChi2.R
f871ffcf1214e78435a6089272167cdc *R/statFis.R
8d4a7abb8243c0f92ecacca2df3f3d2d *R/statFst.R
096b5916d3c4833c724aed30e38e2100 *R/statGst.R
49f38984e42f588bfaeeec0c52f64b6f *R/statJostD.R
43c19f35eec7cd5d33545d7cd95936a9 *R/statPhist.R
2bfa9c61561c815941609b2fcdb4e147 *R/strataG-internal.R
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1f16ae78f6ab84b0dbde2a3587d4a5ac *R/strataSplit.R
33b86092d45a5d3533fac08f89f5276f *R/stratify.R
2a528ea81380e150c828a96db80ec965 *R/structure.R
41e44c6afe3228bf7f3aa56592209865 *R/structurePlot.R
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39d9902758c89b1f7188dd3ce504ccc7 *R/summarizeSeqs.R
f7e7ca6aee35e4e54a2e8bb9cee99747 *R/summary.gtypes.R
8d8afb2117cbea4a518e84d301bccb3a *R/sysdata.rda
ad6f5acf56b06f452795cf27d1f1c80f *R/tajimasD.R
b498a3b35478dd7c2a2af5a0ed43e1fc *R/theta.R
7ef02500f898b82b43e9f9346972ba65 *R/trimNs.R
ece5976086119e9e9d97b6d80d3237fc *R/validIupacCodes.R
9cc43127e46e9798a76582e6239e84e8 *R/variableSites.R
9505b7327e4ed6c83ee2ee579df9b855 *R/wrightFst.R
103b3ef91b60b090408d86c51018ed4a *R/write.arlequin.R
3d60919b755859e47e22ff2a45096cc6 *R/write.gtypes.R
80d3b3276439b88255cee04eff1e0cbd *R/write.nexus.snapp.R
f2395b361e7844cd8f19927571109423 *README.md
747a934c464ab6e9291ba44aeaa2b378 *build/vignette.rds
b8004902e8119cb280936d2b9a5f28b2 *data/bowhead.snp.position.rda
299da693a2182f1c7543eda228c6b40f *data/bowhead.snps.rda
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7cb1efe9b6653210e027c45e908907d3 *data/dolph.haps.rda
4904910e4cde59d300caf6661fae7311 *data/dolph.msats.rda
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4b71ae67f58c70f7265065c63ea231a3 *data/dolph.strata.rda
42dd41ee6cf514d4f3003fdc12ccac2a *data/msats.g.rda
2fe4612e6176d7203bb2953fd2f3bb10 *inst/doc/external.programs.Rmd
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58b7d1ba1e5c314db11f47024a287096 *inst/doc/population.structure.html
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f8a99915f16880f7df48be827a269849 *inst/extdata/dolph.seqs.fasta
78e5d7220ceaaca3a5e0cd02e6b5528d *man/LDgenepop.Rd
333e85b96f630e7df6d395f5fc9a8ed3 *man/TiTvRatio.Rd
8f0b1871b5267b4551f692fea984ad92 *man/alleleFreqFormat.Rd
127e51ebb1fb8557e609b58380a6cc82 *man/alleleFreqs.Rd
4f9eab93672c412aaa230b4179005cff *man/alleleSplit.Rd
3c8168b3d3590a0ceffba7784a7947c7 *man/allelicRichness.Rd
e1a5cdc81d80d1ebe6822cc9bcad9835 *man/as.data.frame.gtypes.Rd
89df18d50fcf331f4f5f3ae85f88fb9b *man/as.matrix-gtypes-method.Rd
baa3bd730becaeab3525660550ce5d1d *man/as.multidna.Rd
9de65cb08ff13f1dd65c234eb081cb3a *man/baseFreqs.Rd
583ce641b28360dd679e5154b8bdb505 *man/bowhead.snp.position.Rd
b4660575e76778d497db48fd1af60ed2 *man/bowhead.snps.Rd
2fd5ed225eca5c3a4a104337928b88a7 *man/clumpp.Rd
8e506a7bff5a78b25fa6816c5a6aee21 *man/createConsensus.Rd
0b7c60d4e2957e34f41da2891b5cd7c4 *man/df2gtypes.Rd
49a0b3f81ee4d7035b71b24a1a2d61a0 *man/dloop.g.Rd
ce8097ea53fab1b9feb0c9de6c69272f *man/dolph.haps.Rd
01433e7ea5282d856f91bba47e87ce7b *man/dolph.msats.Rd
1a2bf4e3647b43ede5483ccc11f4aa34 *man/dolph.seqs.Rd
17d0e31f4e466f9608a859f9c53e3467 *man/dolph.strata.Rd
0ee74cf633625f5699236695beeebb81 *man/dupGenotypes.Rd
3cdb98778ced5d7163e57ef78267a946 *man/evanno.Rd
b618a493d30ecb0299e6ef1c62b25153 *man/expectedNumAlleles.Rd
973fb0d9e7bc7b97e784ababcf8c1ece *man/fasta.Rd
2564141424a084f656a612999d595266 *man/fastsimcoal.Rd
cfcba2428575db8db8fb3b25e9ab3ed6 *man/fastsimcoal.input.Rd
e0091df712cbe71c8d54c285c9d31876 *man/fixedDifferences.Rd
4cab5e62b21e601499db436ef6f4551a *man/fixedSites.Rd
a3d8a53ad70213492d74f2bad0ae0bd0 *man/freq2GenData.Rd
1a3f788cf7c2160595cccd240af75845 *man/fstToNm.Rd
c279a01ac3d2c6d6da455f86578de6fa *man/fusFs.Rd
27c0b3790dfc6797035baf914e7e4c34 *man/gelato.Rd
11c17381b2f5872aa023c66707e908c8 *man/genepop.Rd
06ba44ec1883370b21ad45bdf35b40fd *man/gtypes-class.Rd
94fc9eeb948f7e3c21858509e712b609 *man/gtypes.accessors.Rd
c63565e838218294716c4f90eb024f3b *man/gtypes2genind.Rd
d3b7a503dd52202ea1f138aecc3cb799 *man/gtypes2loci.Rd
f09818cea9076bcd8c6ae84e6b224113 *man/gtypes2phyDat.Rd
2d02de852a7f5617f4d5a9de2333296f *man/haplotypeLikelihoods.Rd
21ff5d8362dcc412ce4a3b96589138cf *man/heterozygosity.Rd
f6e987a34426b9aafeca0b3de53f8349 *man/hweTest.Rd
89933ee4c60b479437de42addc41c6a6 *man/idRows.Rd
c89b1ce30da54163b19bc4f9f3528a84 *man/initialize-gtypes-method.Rd
946a4acc211bda649e03624870487673 *man/is.gtypes.Rd
c863a98fff42cbaccf9bd0f8b83c2b2d *man/iupacCode.Rd
62bec95f74428fd6ae458cef3bdd5cc9 *man/jackHWE.Rd
5fa8ddc42ee7cadc61b543cf5e91f8b6 *man/labelHaplotypes.Rd
19b4ce42005faa53232edbece5aa2417 *man/lowFreqSubs.Rd
28598417344380816e2a0b4bd686ce6c *man/mRatio.Rd
da565435d79d28d124ddd425df0ae166 *man/mafft.Rd
10c5429e01954781d53a61c868d2a0ff *man/mega.Rd
53212bbfd5c47a1b4c469816b2899702 *man/mostDistantSequences.Rd
bb26a1b857d7a3b611045d23253a3b9d *man/mostRepresentativeSequences.Rd
cd9b31b3a997edd02f68418142c02b5e *man/msats.g.Rd
1351d703b9fc4d6fc9d28d23a071ec86 *man/neiDa.Rd
18e68cae832cbd1a555bb30b2cce3620 *man/nucleotideDivergence.Rd
7d4403ef40f81567af55d8f7b8b17316 *man/nucleotideDiversity.Rd
d7d21f6110dfad6fb8280471e1624199 *man/numAlleles.Rd
7a8b723b995963a50b30581a03b64676 *man/numGensEq.Rd
9816208c85cf3e360a8a1a6478028e5c *man/numMissing.Rd
35ddb509fad0cc71cf538e0dfbc91e83 *man/permuteStrata.Rd
f5293249fb20da53258be7c3c2dda4bf *man/phase.Rd
519087de01d1341e0a4afda91cc6781f *man/popStructStat.Rd
cca56d5c832f4e7d13a4778851227326 *man/popStructTest.Rd
4ab5b2b381e21858c8e83918558472e5 *man/privateAlleles.Rd
ed440024ccbbf43f40e5f660a07f2776 *man/propUniqueAlleles.Rd
c0d30af911f15227780b4750091b70be *man/qaqc.Rd
e8d8eda5fc7e85233f5984f47a20a353 *man/readGenData.Rd
1bafc12f5e0a607eb0c71df9aa3e5793 *man/removeSequences.Rd
f14f8b853c71a422cceed65091a89eb2 *man/sequence2gtypes.Rd
2f49b86cb959eb13ec6559b3a9acadd3 *man/sharedLoci.Rd
eacb3c882027684cb3ab4f31c51e09ab *man/show-gtypes-method.Rd
2701af6c6fe16dfc481edab7921f4eb3 *man/simGammaHaps.Rd
f80a6f717ca8334b05c7159461532f60 *man/strataG-internal.Rd
c042dc0dd2169fb7c166e8e6d451b3cc *man/strataG-package.Rd
8d710367de7d3464ee7c270442d9007e *man/strataSplit.Rd
d57c866bc94b474e31cae01878b084e6 *man/stratify.Rd
d20b00e0d4cc589cfdfad3472bf15045 *man/structure.Rd
672922e97b10a716857f3a4c340959dd *man/structurePlot.Rd
778539e81ddbc7b75554d84144d21c09 *man/summarizeLoci.Rd
0e96229f8fc975ce6db564a9f35b2017 *man/summarizeSeqs.Rd
8a286e8bde4d0121695ca78f41c5ab7f *man/summary-gtypes-method.Rd
3693a97ce64e06f086a18859d95408fb *man/tajimasD.Rd
4dbab09f446fb1ad910d094864f768bc *man/theta.Rd
1d0b3dc4b54f552bb67cd7144ce0fa46 *man/trimNs.Rd
6e47333b70bfdfffb8668149fe22368a *man/validIupacCodes.Rd
482f5d9e7858dd68de7ba51f4846ea01 *man/variableSites.Rd
02ea27a1d0358e2d51112c5061880392 *man/wrightFst.Rd
98d170fe72b078e415c9edb7e41e1d6c *man/write.arlequin.Rd
fca867efee2a75dd4d314d358881d8a7 *man/write.gtypes.Rd
5d5dc1cbe576e60b819dcc708b4fb364 *man/write.nexus.snapp.Rd
58c87ef87e5d2a02929a7e02d6635e0f *src/Hstats_C.cpp
09c7f5cc0fd9049005b47a4bfb24c43e *src/RcppExports.cpp
6a753e64bc64e9a1d9233355ffc2ed85 *src/misc.funcs.cpp
eb38ebb9e35ea513d2cbe9fe9878efee *src/statChi2_C.cpp
a8f1c6243b35d3f72797a8187d11bde9 *src/statFis_C.cpp
3de13d40b894f109ce1ccbb803c6a3e0 *src/statFst_C.cpp
5e14044d18b8abc3c4b976ec7de28f00 *src/statGst_C.cpp
0d0e20b02fd1e702cf7f96953a0df6f5 *src/statJostD_C.cpp
6b5c0c2287e82815a7ada25102bbcb33 *src/statPhist_C.cpp
2fe4612e6176d7203bb2953fd2f3bb10 *vignettes/external.programs.Rmd
4459cceaca25f54c50f564c35adfc431 *vignettes/gtypes.Rmd
27753a5c240c108a856f7f38e2424c86 *vignettes/msats.csv
97473d04d663d5fa1a93a44eafec3642 *vignettes/population.structure.Rmd
e07b0b883e6b97f4b570695c6fe4e4b9 *vignettes/qaqc.Rmd
e6c86c4ed5b846c357000cf19ac5be38 *vignettes/sequences.Rmd
8467f5be054ac0baf560042fe6a22c8a *vignettes/summaries.Rmd
