Package: onemap
Title: Construction of Genetic Maps in Experimental Crosses
Version: 3.2.4
Description: Analysis of molecular marker data from model and non-model systems. 
    For the later, it allows statistical analysis by simultaneously estimating 
    linkage and linkage phases (genetic map construction) according to Wu and 
    colleagues (2002)
    <doi:10.1006/tpbi.2002.1577>. All analysis are based on multi-point 
    approaches using hidden Markov models.
Authors@R: c(person("Cristiane", 
                    "Taniguti", 
                    role=c("aut", "cre"), 
                    email="chtaniguti@hotmail.com"),
             person("Marcelo", 
                    "Mollinari", 
                    role = "aut"), 
             person("Rodrigo", 
                    "Amadeu", 
                    role = "ctb"),
             person("Getulio", 
                    "Ferreira", 
                    role="ctb"),
             person("Gabriel", 
                    "Margarido", 
                    role = "aut"), 
             person("Jeekin", 
                    "Lau", 
                    role = "ctb"),
             person("Karl",
                    "Broman", 
                    role = "ctb"),
            person(given = "Katharine",
                    family = "Preedy",
                    role = c("ctb", "cph"),
                    comment = "MDS ordering algorithm"),
            person(given = "Bastian", 
                    family = "Schiffthaler", 
                    role = c("ctb","cph"),
                    comment = "HMM parallelization"),        
             person("Augusto", 
                    "Garcia", 
                    role = c("aut", "ctb"), 
                    email = "augusto.garcia@usp.br"))
LinkingTo: Rcpp (>= 1.0.0)
Depends: R (>= 3.6.0)
Imports: ggplot2 (>= 2.2.1), plotly (>= 4.7.1), reshape2 (>= 1.4.1),
        Rcpp (>= 0.10.5), graphics, methods, stats, utils, grDevices,
        smacof, princurve, parallel, dplyr, tidyr, htmlwidgets, ggpubr,
        RColorBrewer, dendextend, vcfR (>= 1.6.0)
Suggests: knitr (>= 1.10), rmarkdown, testthat, stringr, gatepoints
VignetteBuilder: knitr
Encoding: UTF-8
License: GPL-3
URL: https://github.com/cristianetaniguti/onemap
BugReports: https://github.com/Cristianetaniguti/onemap/issues
Repository: CRAN
Packaged: 2026-01-12 18:05:48 UTC; cht47
NeedsCompilation: yes
Date/Publication: 2026-01-13 01:00:02 UTC
RoxygenNote: 7.3.3
biocViews:
Author: Cristiane Taniguti [aut, cre],
  Marcelo Mollinari [aut],
  Rodrigo Amadeu [ctb],
  Getulio Ferreira [ctb],
  Gabriel Margarido [aut],
  Jeekin Lau [ctb],
  Karl Broman [ctb],
  Katharine Preedy [ctb, cph] (MDS ordering algorithm),
  Bastian Schiffthaler [ctb, cph] (HMM parallelization),
  Augusto Garcia [aut, ctb]
Maintainer: Cristiane Taniguti <chtaniguti@hotmail.com>
Built: R 4.4.3; x86_64-w64-mingw32; 2026-03-11 06:00:48 UTC; windows
Archs: x64
