Visually Exploring Random Forests

Documentation for package ‘ggRandomForests’ version 3.1.0

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ggRandomForests: Visually Exploring Random Forests

-- A --

autoplot.gg	'autoplot' methods for 'ggRandomForests' data objects
autoplot.gg_brier	'autoplot' methods for 'ggRandomForests' data objects
autoplot.gg_error	'autoplot' methods for 'ggRandomForests' data objects
autoplot.gg_isopro	'autoplot' methods for 'ggRandomForests' data objects
autoplot.gg_partial	'autoplot' methods for 'ggRandomForests' data objects
autoplot.gg_partialpro	'autoplot' methods for 'ggRandomForests' data objects
autoplot.gg_partial_rfsrc	'autoplot' methods for 'ggRandomForests' data objects
autoplot.gg_partial_varpro	'autoplot' methods for 'ggRandomForests' data objects
autoplot.gg_rfsrc	'autoplot' methods for 'ggRandomForests' data objects
autoplot.gg_roc	'autoplot' methods for 'ggRandomForests' data objects
autoplot.gg_survival	'autoplot' methods for 'ggRandomForests' data objects
autoplot.gg_udependent	'autoplot' methods for 'ggRandomForests' data objects
autoplot.gg_variable	'autoplot' methods for 'ggRandomForests' data objects
autoplot.gg_varpro	'autoplot' methods for 'ggRandomForests' data objects
autoplot.gg_vimp	'autoplot' methods for 'ggRandomForests' data objects

-- C --

calc_auc	Area Under the ROC Curve calculator
calc_auc.gg_roc	Area Under the ROC Curve calculator
calc_roc	Receiver Operator Characteristic calculator
calc_roc.randomForest	Receiver Operator Characteristic calculator
calc_roc.rfsrc	Receiver Operator Characteristic calculator

-- G --

gg_beta_varpro	Per-variable lasso-beta importance from a varPro fit
gg_brier	Brier score and CRPS for survival forests
gg_error	Random forest error trajectory data object
gg_error.randomForest	Random forest error trajectory data object
gg_error.randomForest.formula	Random forest error trajectory data object
gg_error.rfsrc	Random forest error trajectory data object
gg_isopro	Tidy data from a varPro isolation-forest fit
gg_ivarpro	Individual (local) variable importance from a varPro fit
gg_partial	Split partial dependence data into continuous or categorical datasets
gg_partialpro	Partial dependence data from a varPro model
gg_partial_rfsrc	Partial dependence data from an rfsrc model
gg_partial_varpro	Partial dependence data from a varPro model
gg_rfsrc	Predicted response data object
gg_rfsrc.rfsrc	Predicted response data object
gg_roc	ROC (Receiver Operating Characteristic) curve data from a classification forest.
gg_roc.randomForest	ROC (Receiver Operating Characteristic) curve data from a classification forest.
gg_roc.rfsrc	ROC (Receiver Operating Characteristic) curve data from a classification forest.
gg_survival	Nonparametric survival estimates.
gg_survival.default	Nonparametric survival estimates.
gg_survival.rfsrc	Nonparametric survival estimates.
gg_udependent	Variable dependency graph from a uvarpro model
gg_variable	Marginal variable dependence data object.
gg_variable.random	Marginal variable dependence data object.
gg_variable.randomForest	Marginal variable dependence data object.
gg_variable.rfsrc	Marginal variable dependence data object.
gg_varpro	Variable importance data from a varPro model
gg_vimp	Variable Importance (VIMP) data object
gg_vimp.randomForest	Variable Importance (VIMP) data object
gg_vimp.randomForest.formula	Variable Importance (VIMP) data object
gg_vimp.rfsrc	Variable Importance (VIMP) data object

-- K --

kaplan

nonparametric Kaplan-Meier estimates

-- N --

nelson

nonparametric Nelson-Aalen estimates

-- P --

plot.gg_beta_varpro	Plot a 'gg_beta_varpro' object
plot.gg_brier	Plot a 'gg_brier' object
plot.gg_error	Plot a 'gg_error' object
plot.gg_isopro	Plot a varPro isolation-forest anomaly score
plot.gg_ivarpro	Plot a 'gg_ivarpro' object
plot.gg_partial	Plot a 'gg_partial' object
plot.gg_partialpro	Plot a 'gg_partial_varpro' object
plot.gg_partial_rfsrc	Plot a 'gg_partial_rfsrc' object
plot.gg_partial_varpro	Plot a 'gg_partial_varpro' object
plot.gg_rfsrc	Predicted response plot from a 'gg_rfsrc' object.
plot.gg_roc	ROC plot generic function for a 'gg_roc' object.
plot.gg_survival	Plot a 'gg_survival' object.
plot.gg_udependent	Plot a 'gg_udependent' variable dependency graph
plot.gg_variable	Plot a 'gg_variable' object,
plot.gg_varpro	Plot a 'gg_varpro' variable importance object
plot.gg_vimp	Plot a 'gg_vimp' object, extracted variable importance of a 'rfsrc' object
print.gg	Print methods for gg_* data objects
print.gg_beta_varpro	Print methods for gg_* data objects
print.gg_brier	Print methods for gg_* data objects
print.gg_error	Print methods for gg_* data objects
print.gg_isopro	Print methods for gg_* data objects
print.gg_ivarpro	Print methods for gg_* data objects
print.gg_partial	Print methods for gg_* data objects
print.gg_partialpro	Print methods for gg_* data objects
print.gg_partial_rfsrc	Print methods for gg_* data objects
print.gg_partial_varpro	Print methods for gg_* data objects
print.gg_rfsrc	Print methods for gg_* data objects
print.gg_roc	Print methods for gg_* data objects
print.gg_survival	Print methods for gg_* data objects
print.gg_udependent	Print methods for gg_* data objects
print.gg_variable	Print methods for gg_* data objects
print.gg_varpro	Print methods for gg_* data objects
print.gg_vimp	Print methods for gg_* data objects
print.summary.gg	Summary methods for gg_* data objects
print.summary.gg_udependent	Print methods for gg_* data objects

-- Q --

quantile_pts

Quantile-based cut points for coplots

-- S --

summary.gg	Summary methods for gg_* data objects
summary.gg_beta_varpro	Summary methods for gg_* data objects
summary.gg_brier	Summary methods for gg_* data objects
summary.gg_error	Summary methods for gg_* data objects
summary.gg_isopro	Summary methods for gg_* data objects
summary.gg_ivarpro	Summary methods for gg_* data objects
summary.gg_partial	Summary methods for gg_* data objects
summary.gg_partialpro	Summary methods for gg_* data objects
summary.gg_partial_rfsrc	Summary methods for gg_* data objects
summary.gg_partial_varpro	Summary methods for gg_* data objects
summary.gg_rfsrc	Summary methods for gg_* data objects
summary.gg_roc	Summary methods for gg_* data objects
summary.gg_survival	Summary methods for gg_* data objects
summary.gg_udependent	Summary methods for gg_* data objects
summary.gg_variable	Summary methods for gg_* data objects
summary.gg_varpro	Summary methods for gg_* data objects
summary.gg_vimp	Summary methods for gg_* data objects
surv_partial.rfsrc	Survival partial dependence data for one or more predictors

-- V --

varpro_feature_names

Recover original variable names from varpro one-hot encoded feature names