Package: fitPoly
Type: Package
Title: Genotype Calling for Bi-Allelic Marker Assays
Version: 4.0.0
Date: 2025-02-10
Authors@R: c(person(given = c("Roeland", "E."),
                    family = "Voorrips",
                    role = "aut"),
             person(given = "Gerrit",
                    family = "Gort",
                    role = "aut"),
             person(given = c("Alejandro"),
                    family = "Therese Navarro",
                    role = "aut"),
             person(given = "Giorgio",
                    family = "Tumino",
                    role = c("aut", "cre"),
                    email = "giorgio.tumino@wur.nl"))
Description: Genotyping assays for bi-allelic markers (e.g. SNPs) produce
	signal intensities for the two alleles. 'fitPoly' assigns genotypes 
	(allele dosages) to a collection of polyploid samples based on these
	signal intensities. 'fitPoly' replaces the older package 'fitTetra' that was
	limited (a.o.) to only tetraploid populations whereas 'fitPoly' accepts any
	ploidy level. Reference: Voorrips RE, Gort G, Vosman B (2011)
	<doi:10.1186/1471-2105-12-172>. 
	New functions added on conversion of data from SNP array software formats, 
	drawing of XY-scatterplots with or without genotype colors,
    checking against expected F1 segregation patterns,
    comparing results from two different assays (probes) for the same SNP,
    recovery from a saveMarkerModels() crash.
License: GPL-2
Depends: R (>= 3.2.0)
Imports: foreach, devEMF, doParallel, grDevices
Suggests: knitr, rmarkdown
RoxygenNote: 7.3.1
VignetteBuilder: knitr
NeedsCompilation: no
Encoding: UTF-8
Packaged: 2025-02-11 13:01:47 UTC; there001
Author: Roeland E. Voorrips [aut],
  Gerrit Gort [aut],
  Alejandro Therese Navarro [aut],
  Giorgio Tumino [aut, cre]
Maintainer: Giorgio Tumino <giorgio.tumino@wur.nl>
Repository: CRAN
Date/Publication: 2025-02-13 12:42:05 UTC
Built: R 4.4.3; ; 2025-12-15 02:57:48 UTC; windows
