8939b5f1c74962b47c406be11e5744d9 *CITATION
21f051c8b59fa83c6ddf9a996dbf0cce *DESCRIPTION
18a04506373f69caa784d3df77337e9f *INDEX
bc1f4d46ed160309561968727add3956 *LICENSE
24803c30cddd6df95515a729685fff02 *Meta/Rd.rds
3a2d4a78de2c5510fc79e13588a4ac44 *Meta/data.rds
37d8b81a466ed6231df3028dcc22e6be *Meta/features.rds
9e1355a4584074fa34165b3f16c377f8 *Meta/hsearch.rds
b3e610c692ffa8b0f544f7e86d65264a *Meta/links.rds
cb545674f689131530cf2f50ebcf7cdc *Meta/nsInfo.rds
d0ccdfab96b0578883d6fcba1babe1b7 *Meta/package.rds
3e6cff9c3bc5011437c452dbf96d07d8 *Meta/vignette.rds
f3fd9ae22efff9d183ddcf4d9df4ae3b *NAMESPACE
b1813a7329bd40227de3858719873455 *NEWS.md
d6c68f1fe41ced6e98a766a3757313da *R/lineagefreq
32cd2781b8d2082b120afd6580e32829 *R/lineagefreq.rdb
4f4ca9c76d8fdc49aa4b42acbe5a22fc *R/lineagefreq.rdx
0a13d395cf4b4ada393d65b53cefa2b3 *README.md
edbeaef99b3ee8d3163faf42a66fa71a *WORDLIST
183967b43b50f551002f10148b07e4d3 *data/Rdata.rdb
fea75b45a72e8420527eab28d63f0942 *data/Rdata.rds
0fee396e08d22e48682e57f5da076585 *data/Rdata.rdx
77aecc49591712f9387705f5d6507012 *doc/index.html
368f3d01d8c5d4c650a8d8b60b2fbf7b *doc/introduction.R
f2f6e2c4c789b60f2c9c87e976ef9776 *doc/introduction.Rmd
c815e6a16a8e46a3b90c285f42dff759 *doc/introduction.html
6a2f27b9ecb3e3a7d31908db6c6e4216 *doc/model-comparison.R
2ba8421724bc3c2a73fc3ea924857647 *doc/model-comparison.Rmd
0089f2c7b3822ec97f06853434832dcf *doc/model-comparison.html
828f3950304b37c7cd9c6c82449e99fe *doc/real-data-analysis.R
cdf5c93d447980088d2468303d3a2cb9 *doc/real-data-analysis.Rmd
4d4506e853cc42f3659fe60a31a8ffcc *doc/real-data-analysis.html
a28ddd8bbd4efcf1b7800b4055e30056 *doc/surveillance-workflow.R
548f718d9c4720187f6be28d0329fcfb *doc/surveillance-workflow.Rmd
df2d34f46e352686ccff71916b5016d3 *doc/surveillance-workflow.html
4a212268a72a0916937e12471ee42653 *extdata/example_counts.csv
5b894a015ab9bfaa8db89ea320ff55fd *help/AnIndex
6ea445efaf6d5304e6c25b5a15a0a27b *help/aliases.rds
78756c0df993d5a6c7753966e5e925b7 *help/figures/ba2_dynamics.png
66c6928d109419311ae71fb7b597d180 *help/figures/backtest_plot.png
080250d6b8b6dfb092ffa7507375c618 *help/figures/before_after.png
6422be7a87fa3c7dbfbb169aefdfdec8 *help/figures/forecast_plot.png
8afa737cd0c8143b47406b47c9aaf70b *help/figures/growth_advantage_comparison.png
c185be355fbf47dd3a0b221c9d6bb40d *help/figures/jn1_dynamics.png
7cf9f019c97d0083cd36a71f1ae168d1 *help/figures/trajectory_plot.png
e36aa39f3697bcee483837fff38152f1 *help/lineagefreq.rdb
8d3d2b402568c718ed8f60ac1e7ce03f *help/lineagefreq.rdx
ad5851cade6222188e50c15ec4775ba8 *help/paths.rds
758f1dea1359f27fed8de9ab821bead2 *html/00Index.html
ee41876c0116916bb04bcf4fe3e43d78 *html/R.css
5391741884198bfbefa1f86ceb2ac16c *stan/fga.stan
a61b9aa456c4d88e951d5ee990fe7579 *stan/garw.stan
