# An Arsenal of 'R' Functions for Large-Scale Statistical Summaries

## Documentation for package ‘arsenal’ version 3.7.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

A B C D F G H I K L M N O P Q R S T V W X Y misc

arsenal-package | An Arsenal of 'R' Functions for Large-Scale Statistical Summaries

## -- A --

allNA | Some functions to handle NAs
arsenal | An Arsenal of 'R' Functions for Large-Scale Statistical Summaries
arsenal-defunct | Defunct functions in 'arsenal'
arsenal-deprecated | Deprecated functions in 'arsenal'
arsenal_max | tableby Summary Statistics Functions
arsenal_mean | tableby Summary Statistics Functions
arsenal_median | tableby Summary Statistics Functions
arsenal_min | tableby Summary Statistics Functions
arsenal_range | tableby Summary Statistics Functions
arsenal_sd | tableby Summary Statistics Functions
arsenal_sum | tableby Summary Statistics Functions
arsenal_table | 'arsenal' tables with common structure
arsenal_var | tableby Summary Statistics Functions
as.data.frame.freqlist | as.data.frame.freqlist
as.data.frame.modelsum | as.data.frame.modelsum
as.data.frame.summary.freqlist | summary.freqlist
as.data.frame.summary.modelsum | Summarize a 'modelsum' object.
as.data.frame.summary.tableby | The summary method for a 'tableby' object
as.data.frame.tableby | as.data.frame.tableby
as.matrix.selectall | Make a column for "select all" input
as.selectall | Make a column for "select all" input
as.tbstat | Internal 'tableby' functions
as.tbstat_multirow | Internal 'tableby' functions

## -- B --

binomCI | tableby Summary Statistics Functions

## -- C --

c.yaml | Include a YAML header in 'write2'
clog | Family functions for modelsum
code.chunk | Helper functions for 'write2'
comparedf | Compare two data.frames and report differences
comparedf.control | Control settings for 'comparedf' function
comparedf.tolerances | 'comparedf' tolerances
count | tableby Summary Statistics Functions
countcellpct | tableby Summary Statistics Functions
countN | tableby Summary Statistics Functions
countpct | tableby Summary Statistics Functions
countrowpct | tableby Summary Statistics Functions

## -- D --

Date.mdy | Convert numeric dates to Date object, and vice versa
diffs | Extract differences
diffs.comparedf | Extract differences
diffs.summary.comparedf | Extract differences

## -- F --

formulize | formulize
freq.control | Control settings for 'freqlist' function
freqlist | freqlist
freqlist.formula | freqlist
freqlist.internal | Helper functions for freqlist
freqlist.table | freqlist

## -- G --

gmean | tableby Summary Statistics Functions
gmeanCI | tableby Summary Statistics Functions
gmeansd | tableby Summary Statistics Functions
gsd | tableby Summary Statistics Functions

## -- H --

has_strata | 'arsenal' tables with common structure
head.summary.freqlist | Helper functions for freqlist
head.tableby | Helper functions for tableby

## -- I --

includeNA | Some functions to handle NAs
includeNA.default | Some functions to handle NAs
includeNA.factor | Some functions to handle NAs
internal.functions | Internal Functions
iqr | tableby Summary Statistics Functions
is.Date | Convert numeric dates to Date object, and vice versa
is.freqlist | Helper functions for freqlist
is.modelsum | Helper functions for modelsum
is.na.selectall | Make a column for "select all" input
is.selectall | Make a column for "select all" input
is.summary.freqlist | Helper functions for freqlist
is.summary.modelsum | Helper functions for modelsum
is.summary.tableby | Helper functions for tableby
is.tableby | Helper functions for tableby
is.yaml | Include a YAML header in 'write2'

## -- K --

keep.labels | Keep Labels
keep.labels.data.frame | Keep Labels
keep.labels.default | Keep Labels

## -- L --

labels | Labels
labels.arsenal_table | 'arsenal' tables with common structure
labels.data.frame | Labels
labels.keep_labels | Labels
labels<- | Labels
labels<-.arsenal_table | 'arsenal' tables with common structure
labels<-.data.frame | Labels
labels<-.default | Labels
labels<-.keep_labels | Labels
loosen.labels | Keep Labels
loosen.labels.data.frame | Keep Labels
loosen.labels.default | Keep Labels

## -- M --

mdy.Date | Convert numeric dates to Date object, and vice versa
meanCI | tableby Summary Statistics Functions
meanpmsd | tableby Summary Statistics Functions
meanpmse | tableby Summary Statistics Functions
meansd | tableby Summary Statistics Functions
meanse | tableby Summary Statistics Functions
medianmad | tableby Summary Statistics Functions
medianq1q3 | tableby Summary Statistics Functions
medianrange | tableby Summary Statistics Functions
medSurv | tableby Summary Statistics Functions
medSurvCI | tableby Summary Statistics Functions
medSurvQuant | tableby Summary Statistics Functions
medTime | tableby Summary Statistics Functions
merge.arsenal_table | 'arsenal' tables with common structure
merge.freqlist | 'arsenal' tables with common structure
mockstudy | Mock study data for examples
modelsum | Fit models over each of a set of independent variables with a response variable
modelsum.control | Control settings for 'modelsum' function
modelsum.family | Family functions for modelsum
modelsum.internal | Helper functions for modelsum
modpval.tableby | Helper functions for tableby
muck_up_mockstudy | Mock study data for examples

## -- N --

N | tableby Summary Statistics Functions
n.diff.obs | Extract differences
n.diff.obs.comparedf | Extract differences
n.diff.obs.summary.comparedf | Extract differences
n.diffs | Extract differences
n.diffs.comparedf | Extract differences
n.diffs.summary.comparedf | Extract differences
na.modelsum | Helper functions for modelsum
NA.operations | Some functions to handle NAs
na.paired | Helper functions for paired
na.tableby | Helper functions for tableby
negbin | Family functions for modelsum
Nevents | tableby Summary Statistics Functions
NeventsSurv | tableby Summary Statistics Functions
nin | Not in
Nmiss | tableby Summary Statistics Functions
Nmiss2 | tableby Summary Statistics Functions
Nmisspct | tableby Summary Statistics Functions
Nmisspct2 | tableby Summary Statistics Functions
Npct | tableby Summary Statistics Functions
Nrisk | tableby Summary Statistics Functions
NriskSurv | tableby Summary Statistics Functions
Nrowpct | tableby Summary Statistics Functions
Nsigntest | tableby Summary Statistics Functions

## -- O --

Ops.tableby | Helper functions for tableby
ordinal | Family functions for modelsum

## -- P --

padjust | Adjust P-values for Multiple Comparisons
padjust.default | Adjust P-values for Multiple Comparisons
padjust.summary.tableby | Adjust P-values for Multiple Comparisons
padjust.tableby | Adjust P-values for Multiple Comparisons
paired | Summary Statistics of a Set of Independent Variables Paired Across Two Timepoints
paired.control | Control settings for 'paired' function
paired.internal | Helper functions for paired
pct | tableby Summary Statistics Functions
print.arsenal_table | 'arsenal' tables with common structure
print.comparedf | Compare two data.frames and report differences
print.summary.arsenal_table | 'arsenal' tables with common structure
print.summary.comparedf | The summary method for a 'comparedf' object
print.yaml | Include a YAML header in 'write2'

## -- Q --

q1q3 | tableby Summary Statistics Functions

## -- R --

relrisk | Family functions for modelsum
replace2 | Internal Functions
rowbinomCI | tableby Summary Statistics Functions
rowpct | tableby Summary Statistics Functions

## -- S --

selectall | Make a column for "select all" input
set_attr | Labels
set_labels | Labels
smart.split | Internal Functions
sort.freqlist | Helper functions for freqlist
sort.tableby | Helper functions for tableby
summary.comparedf | The summary method for a 'comparedf' object
summary.freqlist | summary.freqlist
summary.modelsum | Summarize a 'modelsum' object.
summary.tableby | The summary method for a 'tableby' object
survival | Family functions for modelsum

## -- T --

tableby | Summary Statistics of a Set of Independent Variables by a Categorical Variable
tableby.control | Control settings for 'tableby' function
tableby.internal | Helper functions for tableby
tableby.stats | tableby Summary Statistics Functions
tableby.stats.internal | Internal 'tableby' functions
tail.summary.freqlist | Helper functions for freqlist
tail.tableby | Helper functions for tableby
tbfmt | Internal 'tableby' functions
tests | Helper functions for tableby
tests.tableby | Helper functions for tableby
tol.char.both | 'comparedf' tolerances
tol.char.case | 'comparedf' tolerances
tol.char.none | 'comparedf' tolerances
tol.char.trim | 'comparedf' tolerances
tol.date.absolute | 'comparedf' tolerances
tol.factor.labels | 'comparedf' tolerances
tol.factor.levels | 'comparedf' tolerances
tol.factor.none | 'comparedf' tolerances
tol.logical.none | 'comparedf' tolerances
tol.NA | 'comparedf' tolerances
tol.num.absolute | 'comparedf' tolerances
tol.num.pct | 'comparedf' tolerances
tol.num.percent | 'comparedf' tolerances
tol.other.none | 'comparedf' tolerances

## -- V --

verbatim | Helper functions for 'write2'

## -- W --

write2 | write2
write2.arsenal_table | write2
write2.character | write2
write2.code.chunk | write2
write2.comparedf | write2
write2.default | write2
write2.internal | Helper functions for 'write2'
write2.knitr_kable | write2
write2.list | write2
write2.summary.arsenal_table | write2
write2.summary.comparedf | write2
write2.verbatim | write2
write2.xtable | write2
write2.yaml | write2
write2html | write2word, write2html, write2pdf
write2pdf | write2word, write2html, write2pdf
write2specific | write2word, write2html, write2pdf
write2word | write2word, write2html, write2pdf

## -- X --

xtfrm.tableby | Helper functions for tableby

## -- Y --

yaml | Include a YAML header in 'write2'

## -- misc --

%nin% | Not in
[.arsenal_table | 'arsenal' tables with common structure
[.keep_labels | Keep Labels
[.selectall | Make a column for "select all" input
[.tableby | 'arsenal' tables with common structure
[<-.keep_labels | Keep Labels