Goodness-of-Fit and Calibration Tests for Logistic Regression

Documentation for package ‘ebrahim.gof’ version 3.1.0

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ebrahim.gof-package	ebrahim.gof: Goodness-of-Fit and Calibration Tests for Logistic Regression
bagoft.fast	Fast BAGofT: the Binary Adaptive Goodness-of-Fit Test
calm.gof	Closed-form goodness-of-fit test for penalized logistic regression (CALM)
cavity.gof	Leave-one-out (cavity) Hosmer-Lemeshow test for penalised logistic regression
cdef.gof	Covariate-Space Directed Ebrahim-Farrington (CDEF) Goodness-of-Fit Test
cubic.calib.gof	Cubic Calibration Likelihood-Ratio Test for Logistic Regression
deepgof1	DeepGOF-1: a pretrained goodness-of-fit test for logistic regression
deepgof1.external	DeepGOF-1 for frozen predictions: external validation of a risk model
def.ensemble.gof	Combine Directed GOF Tests into One Decision (Ensemble)
def.gof	Directed Ebrahim-Farrington (DEF) Goodness-of-Fit Test
deploy.gof	Deployable learned-ensemble GOF test via parametric bootstrap
ebrahim.gof	ebrahim.gof: Goodness-of-Fit and Calibration Tests for Logistic Regression
edge.belt	EDGE-Belt: the grouped calibration picture behind the EDGE test
edge.gof	EDGE: Directed Goodness-of-Fit Test for Binary Logistic Regression
edge.stream	EDGE for Streaming Data: Calibration Monitoring Without Recomputation
edges.gof	EDGES: Cauchy-Combination Ensemble of Directed GOF Tests (Alias)
ef.gof	Ebrahim-Farrington Goodness-of-Fit Test for Logistic Regression
effective_penalty	Effective penalty of the ridge precision estimator
effective_penalty_floor	Effective penalty of the ridge precision estimator
extrapolated_ridge	Extrapolation of ridge precision estimates across penalties
gof.features	Goodness-of-fit evidence features for a fitted model
gof_certificate	Can DeepGOF-1 detect this departure? A certificate from the frozen weights
gof_demo	Synthetic binary outcome data with a smooth calibration misfit
gof_demo_grouped	Grouped-covariate companion to 'gof_demo' (replicated covariate patterns)
gof_install_suggests	Install the optional packages used by 'run.all.gof()'
legoft	LEGofT: frozen-weight combination goodness-of-fit test for binary logistic regression
legoft.localize	Localize misspecification with familywise error control
localize.external	Localize the misfit of frozen predictions, with error control
localize.gof	Localize the misfit of a fitted logistic model, with error control
localize.size	How large is each part of a misfit?
localize.update	Which update does a risk model need? Localization with the updated-model reference
mps_select	Multi-penalty permutation selection of edges
pairscore.gof	Pair score test: squares and product of the DeepGOF-1 pair
penalty_for_kappa	Effective penalty of the ridge precision estimator
plot.deepgof1	Plot the residual map of a DeepGOF-1 test
plot.edge_belt	EDGE-Belt: the grouped calibration picture behind the EDGE test
plot.edge_gof	Plot an EDGE result: the grouped residuals, the shape tested and the bands
plot.gof_battery	Plot the GiViTI calibration belt from a goodness-of-fit battery
plot.gof_localize	Plot a localization verdict
print.edge_belt	EDGE-Belt: the grouped calibration picture behind the EDGE test
print.edge_stream	EDGE for Streaming Data: Calibration Monitoring Without Recomputation
print.gof_battery	Print a goodness-of-fit battery
print.summary.gof_battery	Summarise a goodness-of-fit battery by family
projection.gof	Projection Goodness-of-Fit Test for Binary Regression
ridge_pcor	Ridge precision matrix and ridge partial correlations
ridge_precision	Ridge precision matrix and ridge partial correlations
run.all.external	Run the External-Validation Tests at Once
run.all.gof	Run a Battery of Goodness-of-Fit Tests at Once
shrink.gof	Shrinkage-corrected goodness-of-fit test for penalized (ridge) logistic regression
summary.edge_stream	EDGE for Streaming Data: Calibration Monitoring Without Recomputation
summary.gof_battery	Summarise a goodness-of-fit battery by family
update.edge_stream	EDGE for Streaming Data: Calibration Monitoring Without Recomputation