R: Karl Broman's R Code

# Karl Broman's R Code

## Documentation for package ‘broman’ version 0.96

- DESCRIPTION file
- Package NEWS
- Package README

## Help Pages

%nin% | Value matching
%win% | Value matching
%wnin% | Value matching
add_commas | Add commas to a large number
align_vectors | Align two vectors
arrowlocator | Use the locator function to plot an arrow
attrnames | Get names of attributes
brocolors | Vectors of colors for figures
bromanversion | Installed version of R/broman
cf | Compare objects, including missing data pattern
cf.default | Compare objects, including missing data pattern
cf.list | Compare objects, including missing data pattern
chisq | Chi-square test by simulation for a two-way table
ciplot | Effect plot with multiple CIs for different groups
colwalpha | Convert a color to use alpha transparency
compare_rows | Compare rows in a matrix
convert2hex | Convert decimal to hex
crayons | Crayon colors
dec2hex | Convert decimal to hex
dotplot | Dot chart with a gray background
excel_fig | Excel-style figure displaying contents of a matrix
exit | exit R without saving
fac2num | Convert a factor to numeric
fisher | Fisher's exact test for a two-way table
get_precision | Determine the precision of a number
grayplot | Scatterplot with a gray background
grayplot_na | Scatterplot with missing values indicated
h | View html version of help file
hex2dec | Convert from hex to decimal
histlines | Utility to create line-based histogram
jiggle | Jiggle points horizontally
karl_theme | Karl's ggplot2 theme
kbdate | My little date facility
lenuniq | Number of unique values
make | Run make within a package directory
manyboxplot | Boxplot-like figure for many groups
maxabs | maximum of absolute value
mypairs | My scatterplot matrix
myround | Round a number, preserving extra 0's
normalize | Quantile normalization
Numbers | Numbers spelled out in English
numbers | Numbers spelled out in English
objectsizes | Calculate sizes of all objects in workspace
openfile | Open a file
paired.perm.test | Paired permutation t-test
paste. | paste with dot separator
paste.. | paste with null or dot as separator and with collapse
paste.0 | paste with null or dot as separator and with collapse
paste0. | paste with null or dot as separator and with collapse
paste00 | paste with null or dot as separator and with collapse
perm.test | Permutation t-test
pick_more_precise | Pick the more precise value for each element in two related vectors
plot_crayons | Illustration of crayon colors
qqline2 | qqline for qqplot
qr2 | The QR decomposition of a matrix
quantileSE | Sample quantiles and their standard errors
revgray | Create vector of colors from white to black
revrainbow | Create vector of colors from blue to red
rmvn | Simulate multivariate normal
runningmean | Running mean, sum, or median
runningratio | Running ratio
runningratio2 | Running ratio with adaptive window
setRNGparallel | Set up random number generation for parallel calculations
simp | Numerical integration
spell_out | Spell out an integer
strwidth2lines | Calculate width of a character string in number of lines
strwidth2xlim | Calculate horizontal limit in user coordinates for adding labels
switchv | Vectorized version of switch
theme_karl | Karl's ggplot2 theme
timeplot | Scatterplot with date/times on the x-axis
time_axis | Set up a time-based axis
trap | Numerical integration
triarrow | Plot an arrow within a ternary plot
trigrid | Add grid lines to triplot
trilines | Plot lines within a ternary plot
triplot | Plot ternary diagram (triangle plot)
tripoints | Plot points within a ternary plot
tritext | Plot text within a ternary plot
twocolorpal | Create vector of colors from blue to white to red
unsetRNGparallel | Set up random number generation for parallel calculations
vec2string | Turn a vector into a single character string
venn | Plot to-scale Venn diagram
winsorize | Winsorize a vector
xlimlabel | Calulate horizontal limit in user coordinates for adding labels