Schema-Driven Interactive Charts, Network Graphs, and Maps

Documentation for package ‘rtemis.draw’ version 0.5.3

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rtemis.draw: Schema-Driven Interactive Charts, Network Graphs, and Maps

-- A --

A3Config	Annotated Protein Diagram Configuration
AnnotationLayer	Cartesian Annotation Layer
AreaStyle	Area Style
Axis	Axis
AxisLabel	Axis Label
AxisLine	Axis Line
AxisTick	Axis Tick

-- B --

BarConfig	Bar Chart Configuration
BarSeries	Bar Series
BoxplotConfig	Boxplot Configuration
BoxplotSeries	Boxplot Series

-- C --

CalibrationConfig	Calibration Plot Configuration
ChartConfig	Chart Configuration Base Class
chart_config_to_list	Convert a chart config to a plain list
chart_dispatcher_schema	Generate the chart family dispatcher schema
chart_registry	Chart type registry
chart_schema	Generate a JSON Schema for a chart config class
ChoroplethConfig	Choropleth Map Configuration
compile	Compile a chart config into a render option
ConfusionConfig	Confusion Plot Configuration
confusion_input	Normalize confusion inputs to portable frequency records

-- D --

DataZoom	Data Zoom
DensityConfig	Density Chart Configuration
draw	Render a chart configuration or backend option as an htmlwidget
drawOutput	Shiny output for draw widget
draw_a3	Draw an A3 Amino Acid Sequence Visualization
draw_add_fit	Add a Supplied Fit and Interval to a Drawing
draw_add_surface	Add a Supplied Surface to a Three-Dimensional Drawing
draw_annotate	Add References, Bands, and Labels to a Cartesian Drawing
draw_bar	Draw a Bar Chart
draw_boxplot	Draw a Boxplot with Observation Overlays
draw_calibration	Draw Binary Probability Calibration
draw_choropleth	Draw a Choropleth Map
draw_confusion	Draw Confusion Counts and Classification Summaries
draw_density	Draw a Density Plot
draw_fit	Draw True Versus Predicted Values
draw_gantt	Draw a Timeline / Gantt Chart
draw_graph	Render a GraphModel as a Sigma.js htmlwidget
draw_heatmap	Draw a Heatmap
draw_histogram	Draw a Histogram
draw_learning_curve	Draw a Learning Curve from Recorded Losses
draw_line	Draw a Line Chart
draw_manhattan	Draw a Categorical Manhattan Plot
draw_map	Render a MapModel as a MapLibre choropleth htmlwidget
draw_metric	Draw a Metric's Distribution Across Resamples
draw_network	Draw a Network / Graph
draw_panels	Compose Drawings into One Figure
draw_pie	Draw a Pie Chart
draw_protein	Draw an Annotated Protein from Sequence and Annotation Inputs
draw_pvals	Draw One-Minus-P-Value Bars
draw_roc	Draw Receiver Operating Characteristic Curves
draw_sankey	Draw a Sankey Diagram
draw_scatter	Draw a Scatter Plot
draw_scatter3d	Draw Interactive Three-Dimensional Points and Paths
draw_spectrogram	Draw a Spectrogram
draw_survfit	Draw a Fitted Survival Curve
draw_survival	Draw Precomputed Survival Curves
draw_ts	Draw Time Series with Rolling Summaries
draw_varimp	Draw Variable Importance
draw_violin	Draw Violin Distributions
draw_volcano	Draw a Volcano Plot
draw_xt	Draw Independent Time Series on Two Value Axes

-- E --

EChartsOption

ECharts Option

-- F --

FitLayer

Supplied Fit Layer

-- G --

GanttConfig	Gantt Chart Configuration
GraphEdge	Graph Edge
GraphModel	Graph Model
GraphNode	Graph Node
Grid	Grid

-- H --

HeatmapConfig	Heatmap Configuration
HeatmapSeries	Heatmap Series
HistogramConfig	Histogram Configuration

-- I --

ItemStyle

Item Style

-- L --

LabelLine	Label Line
LabelOption	Label Option
Legend	Legend
LineConfig	Line Chart Configuration
LineSeries	Line Series
LineStyle	Line Style

-- M --

MapLibreOption	MapLibre Render Option
MapModel	Map Model
MapRow	Map Row
MarkArea	Mark Area
MarkAreaDataPoint	Mark Area Data Point
MinorSplitLine	Minor Split Line
MinorTick	Minor Tick

-- N --

NetworkConfig

Network Graph Configuration

-- P --

PanelLayout	Rectangular Panel Layout
panel_layout_schema	JSON Schema for Panel Layout Settings
PieConfig	Pie Chart Configuration
PieLabelOption	Pie Label Options
PieSeries	Pie Series

-- R --

read_chart_config	Read a chart config from JSON
renderDraw	Shiny render function for draw widget
resolve	Resolve a partial chart config into a complete one
ROCConfig	ROC Plot Configuration
roc_probabilities	Normalize labels and probability columns by class identity
roc_vertices	Compute empirical ROC vertices with whole tied-score blocks
rtemis.draw	rtemis.draw: Schema-Driven Interactive Charts, Network Graphs, and Maps

-- S --

SankeyConfig	Sankey Diagram Configuration
SankeyEdgeItem	Sankey Edge Item
SankeyLevelOption	Sankey Level Option
SankeyNodeItem	Sankey Node Item
SankeySeries	Sankey Series
save_drawing	Save a Draw Widget to a File
Scatter3DConfig	Three-Dimensional Scatter Configuration
ScatterConfig	Scatter Chart Configuration
ScatterSeries	Scatter Series
setup_A3Config	Set up an Annotated Protein Diagram Configuration
setup_BarConfig	Set up a Bar Chart Configuration
setup_BoxplotConfig	Set up a Boxplot Configuration
setup_CalibrationConfig	Set Up a Calibration Plot Configuration
setup_ChoroplethConfig	Set up a Choropleth Map Configuration
setup_ConfusionConfig	Set Up a Confusion Plot Configuration
setup_DensityConfig	Set up a Density Chart Configuration
setup_GanttConfig	Set up a Gantt Chart Configuration
setup_HeatmapConfig	Set up a Heatmap Configuration
setup_HistogramConfig	Set up a Histogram Configuration
setup_LineConfig	Set up a Line Chart Configuration
setup_NetworkConfig	Set up a Network Graph Configuration
setup_PanelLayout	Set Up a Panel Layout
setup_PieConfig	Set up a Pie Chart Configuration
setup_ROCConfig	Set Up a ROC Plot Configuration
setup_SankeyConfig	Set up a Sankey Diagram Configuration
setup_Scatter3DConfig	Set Up a Three-Dimensional Scatter Configuration
setup_ScatterConfig	Set up a Scatter Chart Configuration
setup_SignificanceConfig	Set Up a Significance Plot Configuration
setup_SpectrogramConfig	Set up a Spectrogram Configuration
setup_SurvivalConfig	Set Up a Survival Curve Configuration
setup_TimeSeriesConfig	Set Up a Time Series Configuration
SigmaOption	Sigma.js Render Option
SignificanceConfig	Significance Plot Configuration
SpectrogramConfig	Spectrogram Configuration
SplitArea	Split Area
SplitLine	Split Line
SurfaceLayer	Supplied Three-Dimensional Surface
SurvivalConfig	Survival Curve Configuration

-- T --

TextStyle	Text Style
Theme	Theme
theme_dark	Dark Theme
theme_light	Light Theme
TimeSeriesConfig	Time Series Configuration
Title	Title
Tooltip	Tooltip
to_json	Convert EChartsOption to JSON
to_list	Convert to echarts-compatible list
true_pred_data	Normalize paired regression observations

-- V --

varimp_data	Normalize variable-importance records
VisualMap	Visual Map

-- W --

write_chart_config

Write a chart config to a JSON file