Evaluation, Visualisation and Sensitivity Analysis of 'APSIM' Classic Output

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Documentation for package ‘apsimeval’ version 0.1.0

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accent_col Accent colour for single-series plots, honouring the colour mode
aggregate_sim Collapse daily output to seasonal or annual values
apply_factors Apply a project's stored factor mapping to freshly read output
apply_project Push a project's labels and palette into the session
apsim_palette Colour-blind safe treatment palette
apsim_vars List variables and units without loading the data block
as_long Pivot wide APSIM output to long form
build_figure Build a multi-panel figure from a list of panel specs
cache_data Combined data from a cache, with duplicate Titles resolved
check_levels Check observed treatment labels against the simulated ones
check_variables Check observed variable names against the simulated ones
cld_letters Compact letter display from a Tukey test
colour_mode Colour mode for every figure
combine_plots Combine panels with shared legend and A/B/C tags
detect_factors Guess the delimiter and which name positions vary
diff_manifest Compare two manifests
exceedance Empirical probability of exceedance
factor_template Editable mapping template for names with no usable structure
get_pal Colours for a set of levels, honouring the current colour mode
gof Goodness-of-fit statistics for observed vs simulated pairs
heat_cols Sequential and diverging fills for heatmaps, honouring the colour mode
load_project Read a project back
map_obs Apply a confirmed column mapping and pivot to long form
new_project Project configuration
obs_sheets Sheet names in a workbook, for the GUI's sheet picker
out_cache Incremental cache over a directory of .out files
pair_obs Pair observed values to simulated output with a date tolerance
panel_source Which data source a panel type needs
panel_spec Describe one panel of a multi-panel figure
plot_anomaly Anomaly of each year against the treatment mean
plot_bar Treatment means with error bars and significance letters
plot_box Distribution of a simulated variable by treatment
plot_density Distribution density by treatment
plot_exceedance Probability of exceedance curve
plot_heatmap Treatment x scenario heatmap
plot_one2one Observed vs simulated 1:1 plot
plot_resid Residual plot
plot_series Multi-variable, multi-treatment time series
plot_taylor Taylor diagram
plot_tornado Tornado plot of one-at-a-time or range sensitivity
plot_ts Simulated time series with observed points overlaid
plot_variance Variance decomposition from sens_anova()
preview_factors Preview a factor mapping before applying it
read_obs_raw Read observed data from Excel or CSV
read_out Read an APSIM Classic .out file
read_out_dir Read every .out file in a directory
refresh Re-scan and re-parse only changed files
render_panel Render one panel from its spec
run_app Launch the apsimeval GUI
save_project Write a project to disk
save_pub Save at journal column widths and print resolution
scan_out Manifest of .out files in a directory
sens_anova Variance-based sensitivity from a factorial simulation set
sens_oat One-at-a-time sensitivity around a baseline run
sens_range Range of output spanned by each factor
set_colour_mode Colour mode for every figure
set_factors Split simulation names into treatment factor columns
set_labels Fix treatment colours, display labels and units for the whole session
set_palette Fix treatment colours, display labels and units for the whole session
set_project_factors Record the current mapping into a project
specs_from_list Turn panel specs into plain lists for the project file, and back
specs_to_list Turn panel specs into plain lists for the project file, and back
split_phase Split paired data into calibration and validation subsets
suggest_cutoff Suggest a calibration/validation cutoff date
theme_apsim Publication theme for APSIM figures