annual_cost             Annual cost
collective_treatment_cost_calculation
                        Collective treatment cost calculation
config_ambre            config_ambre
create_random_distribution
                        Create random distribution
create_scenario         Create Exposure Scenario
create_scenario_from_df
                        Create Exposure Scenario from a data.frame
dalys_calculation       Dalys calculation
distribution_repeater   Helper function: distribution repeater
dr.betapoisson          Dose-response model: beta-poisson
dr.expo                 Dose-response model: exponential
enumeration             Enumerate Elements
final_dose_calculation
                        Final dose calculation
generate_random_values
                        Create random distribution based on
                        configuration file
get_exposure_value_or_stop
                        Get exposure value or stop
get_infection_prob      Get infection probability values
get_risk_total          Get risk total
get_scheme_events_wide
                        Calculate Wide-Format Treatment Scheme Events
get_tbl_risk            Get table risk
get_treatment_data      Simulate treatment data for pathogen processes
illness_probability_calculation
                        Illness probability calculation
infection_probability_calculation
                        Infection probability calculation
inflow_concentration    Inflow concentration
inflow_concentration_custom
                        Inflow concentration custom
initial_dose_calculation
                        Initial dose concentration
irrigation_need_calculation
                        Irrigation need calculation
percentage_irrigation_need
                        Percentage irrigation need
perimeter_calculation   Perimeter calculation
plot_comparison_qmra_initial_vs_supplementary_processes
                        Plot comparison QMRA calculation with initial
                        vs supplementary processes
plot_dalys              Plot dalys
plot_infection_probability
                        Plot infection probability
plot_inflow             Plot inflow concentration
plot_logreduction       Plot log reduction
plot_volumes            Plot volume
process_cost_calculation
                        Barrier Cost Calculation
query_barrier           Barrier Query
query_crop              Crop Query
query_crop_height       Query crop height
query_exp_path          Path Query
query_frequency         Query frequency
query_irrigation_need   Query irrigation need
query_matrix            Query Matrix
query_pathogen          Pathogen Query
query_pop               Population Query
query_volume            Query volume
regulation_matrix_concentration
                        Concentration reduction matrix calculation
regulation_matrix_log   Log reduction matrix calculation
retrieve_specific_barrier
                        Apply barriers' specific log-reduction to a
                        config
run_economic_analysis   Run economic analysis
run_qmra_custom         Run QMRA custom
run_qmra_initial_situation
                        Run QMRA on initial situation
run_qmra_learning_case
                        QMRA on learning case
run_qmra_supplementary_process
                        Run QMRA on addition process
simulate_exposure       Simulate: exposure
simulate_inflow         Simulate: inflow
simulate_treatment      Simulate Treatment
total_area_calculation
                        Total area
total_investment_cost   Total investment cost
total_irrigation_need   Total irrigation need
update_concentration    Update concentration with desired value
update_frequency        Frequency update
update_frequency_with_desired_value
                        Updated frequency with desired value
update_logreduction_decay
                        Update log reduction for decay barrier
update_logreduction_path
                        Update log reduction for specific path
update_logreduction_specific_barrier
                        Update log reduction with specific value
update_monte_carlo      Update monte carlo value
update_pathogen         Pathogen update
update_treatment_scheme
                        Update treatment scheme
update_volume           Volume update
update_volume_with_desired_value
                        Update volume with desired value
water_price             Water charge
