as_omics_braid_data     Coerce supported objects to OmicsBraid data
bootstrap_consensus_intervals
                        Bootstrap confidence intervals for GLS
                        consensus effects
bootstrap_effect_covariance
                        Estimate cross-omic effect covariance by
                        matched-subject bootstrap
bootstrap_effect_intervals
                        Bootstrap confidence intervals for
                        layer-specific standardized effects
braid_pattern_probabilities
                        Quantify uncertainty in effect-braid geometry
braid_results_table     Create a one-row-per-entity master result table
classify_braids         Classify cross-omic braid patterns using
                        inferential evidence
empirical_omics_tests   Empirically calibrate OmicsBraid omnibus and
                        heterogeneity tests
estimate_effects        Estimate layer-specific standardized effects
harmonize_entities      Harmonize assay-specific feature identifiers to
                        common entities
integrate_effects       Integrate effects across omic layers and
                        quantify heterogeneity
omics_braid_data        Construct an OmicsBraid data object
orient_omics            Harmonize the sign orientation of omic-layer
                        effects
plot_braid_heatmap      Plot a braid heatmap across entities and omics
plot_concordance_map    Plot concordance versus integrated significance
plot_effect_braid       Plot an Effect Braid
plot_evidence_forest    Plot an Omics Evidence Forest
read_omics_braid        Read OmicsBraid input files
run_omics_braid         Run the complete OmicsBraid workflow on
                        sample-level data
run_omics_braid_summary
                        Run OmicsBraid from externally estimated
                        summary statistics
score_pathways          Score pathways within each omic layer
simulate_braid_data     Simulate multi-omics data with known braid
                        patterns
test_braid_trend        Test ordered cross-omic effect trajectories
                        with generalized least squares
test_equivalence        Test practical equivalence to a negligible
                        effect region
validate_omics_braid_data
                        Validate an OmicsBraid data object
write_omics_braid       Export OmicsBraid results
