Spatial Conditional Association Networks in Registered Tumor Volumes

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Documentation for package ‘ISPAT3D’ version 0.3.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

ispat3d_edge_table	Extract signed conditional-association edges
ispat3d_example_image	Simulate a small registered cell map with section-wise KDE inputs
ispat3d_fit	Fit current ISPAT-3D on selected cells
ispat3d_fit_2d	Fit the matched section-wise ISPAT-2D comparator
ispat3d_fit_covariance	Fit shared and zone-specific factor covariance from sufficient statistics
ispat3d_partial_correlation	Convert a full covariance matrix to partial correlations
ispat3d_plot_network	Plot a circular partial-correlation network using base graphics
ispat3d_plot_zones	Facet all fitted zone networks in one base-R figure
ispat3d_sample	Select spatially balanced cells by zone and section