| amr_alert |
Generate AMR surveillance alerts |
| amr_cusum |
Detect AMR changes using CUSUM |
| amr_ewma |
Detect antimicrobial resistance changes using EWMA |
| amr_example |
Example antimicrobial resistance surveillance dataset |
| amr_hotspot |
Detect spatial hotspots of antimicrobial resistance |
| amr_logistic |
Fit logistic regression for AMR risk factors |
| amr_mdr |
Identify multidrug-resistant isolates |
| amr_prevalence |
Calculate antimicrobial resistance prevalence |
| amr_resistance_profile |
Calculate antimicrobial resistance profile |
| amr_trend |
Calculate temporal antimicrobial resistance trends |
| amr_xdr |
Identify extensively drug-resistant isolates |
| plot_amr_trend |
Plot antimicrobial resistance trend |
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