Topological Data Analysis: Mapper Algorithm

Documentation for package ‘MapperAlgo’ version 1.0.6

cluster_cutoff_at_first_empty_bin	Cut the hierarchical clustering tree to define clusters
cover_points	Cover points based on intervals and overlap
CPEmbedding	Conditional Probability Embedding for Mapper Nodes
find_best_k_for_kmeans	Find the optimal number of clusters for k-means
GridSearch	GridSearch searched over a list of interval width and overlap, useful for visualizing the convergence of the Mapper.
MapperAlgo	Mapper Algorithm
MapperCorrelation	Visualizes the correlation between two Mapper colorings.
mapperEdges	Create Mapper Edges
MapperPlotter	Plot Mapper Result
mapperVertices	Create Mapper Vertices
perform_clustering	Perform clustering within a level set
save_mapper_png	GridSearch searched over a list of interval width and overlap, useful for visualizing the convergence of the Mapper.
simplcial_complex	Construct adjacency matrix of the simplicial complex
to_lsfi	Convert level set multi-index (lsmi) to flat index (lsfi)
to_lsmi	Convert level set flat index (lsfi) to multi-index (lsmi)